Strain Fitness in Sphingobium sp. HT1-2 around GFF5312

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,303,072	-		GFF5311	0.77	-0.9
5,303,102	+		GFF5311	0.80	-2.4
5,303,109	-		GFF5311	0.80	-0.1
5,303,115	+		GFF5311	0.81	-1.7
5,303,115	+		GFF5311	0.81	+1.0
5,303,115	+		GFF5311	0.81	+0.5
5,303,115	+		GFF5311	0.81	-1.4
5,303,131	+		GFF5311	0.82	+1.5
5,303,133	-		GFF5311	0.82	+0.0
5,303,151	-		GFF5311	0.84	+0.3
5,303,156	+		GFF5311	0.84	+0.4
5,303,156	+		GFF5311	0.84	-1.2
5,303,208	+		GFF5311	0.89	-1.3
5,303,215	+		GFF5311	0.90	-1.6
5,303,237	+				-0.1
5,303,237	+				-0.4
5,303,242	+				-0.2
5,303,242	+				-0.3
5,303,253	+				+0.6
5,303,263	+				-1.2
5,303,266	-				-0.0
5,303,288	+				+1.1
5,303,369	-				+0.0
5,303,413	+				-1.9
5,303,420	+				+0.1
5,303,432	+				-0.5
5,303,432	+				-1.1
5,303,440	-				+0.9
5,303,440	-				+0.5
5,303,441	+				-0.5
5,303,527	-				-1.7
5,303,551	+				-0.9
5,303,551	+				-1.0
5,303,551	+				+0.7
5,303,551	+				+0.4
5,303,551	+				-1.3
5,303,551	+				-1.3
5,303,551	+				-0.7
5,303,551	+				-0.1
5,303,551	+				-0.2
5,303,551	+				-1.1
5,303,551	+				-0.5
5,303,551	+				+0.6
5,303,551	+				-1.1
5,303,551	+				-1.4
5,303,551	+				+0.3
5,303,551	+				+0.6
5,303,554	-				-1.5
5,303,559	-				+0.6
5,303,559	-				-0.8
5,303,559	-				+0.5
5,303,559	-				+0.1
5,303,559	-				-1.6
5,303,559	-				-0.1
5,303,559	-				+0.0
5,303,559	-				-1.2
5,303,559	-				+0.1
5,303,569	-				+1.0
5,303,570	+				-1.7
5,303,573	-				-0.8
5,303,578	-				-0.7
5,303,578	-				+0.1
5,303,598	+				+0.7
5,303,606	-				+0.6
5,303,606	-				+0.3
5,303,621	+				-1.2
5,303,621	+				+0.0
5,303,631	+				-1.7
5,303,631	+				-1.3
5,303,639	-				-0.1
5,303,654	-				-0.9
5,303,666	+				+1.3
5,303,667	+				-0.8
5,303,667	+				-0.9
5,303,667	+				-0.6
5,303,667	+				+0.6
5,303,667	+				-0.6
5,303,667	+				-0.4
5,303,675	-				+1.5
5,303,675	-				+0.5
5,303,675	-				+0.5
5,303,677	+				-0.0
5,303,701	-				+1.3
5,303,709	-				-0.9
5,303,711	+				-0.7
5,303,711	+				-0.7
5,303,732	+				-0.9
5,303,732	+				+0.0
5,303,732	+				+0.6
5,303,734	-				-0.7
5,303,740	-				-0.0
5,303,740	-				+0.3
5,303,740	-				+1.2
5,303,740	-				+0.3
5,303,740	-				-0.9
5,303,740	-				-0.2
5,303,750	+				-1.0
5,303,755	-				-0.8
5,303,771	+				+0.1
5,303,780	-				-1.9
5,303,781	-				+0.7
5,303,781	-				-1.3
5,303,805	+				-0.2
5,303,815	+				+0.6
5,303,815	+				+0.3
5,303,820	+				-0.2
5,303,820	+				-0.1
5,303,820	+				+1.3
5,303,823	-				+0.3
5,303,823	-				-0.1
5,303,828	-				-0.6
5,303,829	+				-0.8
5,303,856	+				-0.2
5,303,856	-				-0.7
5,303,859	-				-0.9
5,303,877	+				+0.3
5,303,893	+				+0.2
5,303,895	-				+0.8
5,303,929	+				-2.0
5,303,929	+				+0.3
5,303,929	+				-0.9
5,303,937	-				+0.3
5,303,982	-				-0.9
5,304,010	+				-0.9
5,304,018	-				+1.1
5,304,081	+				-1.3
5,304,104	+				-1.5
5,304,124	-				-0.1
5,304,154	+				+0.3
5,304,221	+				+0.4
5,304,229	-				-0.7
5,304,241	+				-1.7
5,304,244	-				-3.2
5,304,298	+				-1.4
5,304,298	+				-0.6
5,304,301	+				-0.0
5,304,301	+				-0.3
5,304,301	+				+0.6
5,304,301	+				-1.4
5,304,301	+				-1.9
5,304,306	-				-0.7
5,304,332	+		GFF5312	0.11	+0.3
5,304,336	+		GFF5312	0.11	+1.6
5,304,339	-		GFF5312	0.11	+0.3
5,304,339	-		GFF5312	0.11	-1.3
5,304,340	-		GFF5312	0.11	+0.1
5,304,341	+		GFF5312	0.11	-1.3
5,304,344	-		GFF5312	0.12	-0.6
5,304,344	-		GFF5312	0.12	-0.9
5,304,344	-		GFF5312	0.12	-1.2
5,304,346	+		GFF5312	0.12	+0.2
5,304,349	-		GFF5312	0.12	-1.5
5,304,354	-		GFF5312	0.12	-0.1
5,304,373	+		GFF5312	0.13	-0.1
5,304,373	+		GFF5312	0.13	+0.9
5,304,400	-		GFF5312	0.14	+0.1
5,304,402	+		GFF5312	0.14	-0.3
5,304,410	-		GFF5312	0.14	-1.2
5,304,427	-		GFF5312	0.15	-1.9
5,304,444	+		GFF5312	0.16	+1.3
5,304,482	-		GFF5312	0.17	-1.6
5,304,490	+		GFF5312	0.17	-0.7
5,304,490	+		GFF5312	0.17	-0.9
5,304,490	+		GFF5312	0.17	+0.2
5,304,498	-		GFF5312	0.18	-0.8
5,304,529	+		GFF5312	0.19	+1.1
5,304,530	+		GFF5312	0.19	+0.3
5,304,530	+		GFF5312	0.19	+1.3
5,304,530	+		GFF5312	0.19	-0.7
5,304,538	-		GFF5312	0.19	-0.5
5,304,538	-		GFF5312	0.19	-0.6
5,304,541	+		GFF5312	0.19	+0.6
5,304,544	-		GFF5312	0.20	+0.0
5,304,642	+		GFF5312	0.24	-0.7
5,304,671	+		GFF5312	0.25	-1.0
5,304,671	+		GFF5312	0.25	-0.3
5,304,678	-		GFF5312	0.25	+0.3
5,304,678	-		GFF5312	0.25	-0.8
5,304,679	-		GFF5312	0.25	+0.7
5,304,680	+		GFF5312	0.25	+1.1
5,304,681	+		GFF5312	0.25	-0.2
5,304,686	+		GFF5312	0.25	-2.5
5,304,686	+		GFF5312	0.25	-1.2
5,304,686	+		GFF5312	0.25	-2.2
5,304,686	+		GFF5312	0.25	-1.4
5,304,689	-		GFF5312	0.25	-0.7
5,304,691	+		GFF5312	0.25	+0.1
5,304,694	-		GFF5312	0.26	-1.3
5,304,694	-		GFF5312	0.26	+0.5
5,304,701	+		GFF5312	0.26	-0.4
5,304,706	+		GFF5312	0.26	-2.2
5,304,709	-		GFF5312	0.26	-0.5
5,304,709	-		GFF5312	0.26	-1.5
5,304,709	-		GFF5312	0.26	+0.7
5,304,744	+		GFF5312	0.28	-1.7
5,304,774	+		GFF5312	0.29	-0.7
5,304,799	-		GFF5312	0.30	-0.5
5,304,812	+		GFF5312	0.30	+0.7
5,304,814	+		GFF5312	0.30	-0.1
5,304,820	-		GFF5312	0.31	+0.0
5,304,822	+		GFF5312	0.31	-2.2
5,304,830	+		GFF5312	0.31	+0.6
5,304,830	+		GFF5312	0.31	+1.0
5,304,830	+		GFF5312	0.31	+1.5
5,304,830	+		GFF5312	0.31	+0.5
5,304,831	-		GFF5312	0.31	-1.3
5,304,831	-		GFF5312	0.31	+0.1
5,304,831	-		GFF5312	0.31	+0.0
5,304,838	-		GFF5312	0.31	-0.7
5,304,838	-		GFF5312	0.31	-1.2
5,304,896	+		GFF5312	0.34	+0.8
5,304,896	+		GFF5312	0.34	-1.5
5,304,896	+		GFF5312	0.34	+0.0
5,304,896	+		GFF5312	0.34	-1.4
5,304,896	+		GFF5312	0.34	-1.6
5,304,896	+		GFF5312	0.34	+1.6
5,304,904	-		GFF5312	0.34	-1.3
5,304,904	-		GFF5312	0.34	-0.9
5,304,904	-		GFF5312	0.34	-0.1
5,304,904	-		GFF5312	0.34	+0.3
5,304,904	-		GFF5312	0.34	+0.9
5,304,916	+		GFF5312	0.35	+0.4
5,304,925	-		GFF5312	0.35	+0.5
5,304,947	+		GFF5312	0.36	-0.1
5,304,947	+		GFF5312	0.36	-1.2
5,304,955	-		GFF5312	0.36	+0.9
5,304,955	-		GFF5312	0.36	+0.5
5,304,955	-		GFF5312	0.36	+0.1
5,304,955	-		GFF5312	0.36	+0.6
5,304,955	-		GFF5312	0.36	-0.9
5,304,959	+		GFF5312	0.36	-1.4
5,304,965	-		GFF5312	0.37	-0.4
5,304,965	-		GFF5312	0.37	-1.2
5,304,965	-		GFF5312	0.37	-0.2
5,304,988	+		GFF5312	0.37	+0.9
5,304,988	+		GFF5312	0.37	+0.1
5,304,992	+		GFF5312	0.38	+0.6
5,305,002	+		GFF5312	0.38	+0.2
5,305,004	-		GFF5312	0.38	+0.7
5,305,032	+		GFF5312	0.39	+0.5
5,305,034	+		GFF5312	0.39	-0.3
5,305,041	+		GFF5312	0.40	+0.0
5,305,041	-		GFF5312	0.40	-0.9
5,305,072	+		GFF5312	0.41	+0.3
5,305,072	-		GFF5312	0.41	+1.5
5,305,103	+		GFF5312	0.42	-0.3
5,305,115	-		GFF5312	0.43	+0.2
5,305,136	+		GFF5312	0.43	-0.5
5,305,138	+		GFF5312	0.43	-1.7
5,305,146	-		GFF5312	0.44	-1.2
5,305,146	-		GFF5312	0.44	+0.5
5,305,149	-		GFF5312	0.44	+0.5
5,305,164	+		GFF5312	0.45	-1.9
5,305,185	+		GFF5312	0.45	+1.6
5,305,193	-		GFF5312	0.46	+1.5
5,305,219	+		GFF5312	0.47	-1.1
5,305,227	-		GFF5312	0.47	-0.9
5,305,254	+		GFF5312	0.48	-0.9
5,305,257	-		GFF5312	0.48	+0.7
5,305,257	-		GFF5312	0.48	-1.2
5,305,372	+		GFF5312	0.53	-0.7
5,305,373	+		GFF5312	0.53	-1.7
5,305,381	+		GFF5312	0.53	-0.4
5,305,381	+		GFF5312	0.53	-0.7
5,305,381	-		GFF5312	0.53	-1.3
5,305,383	-		GFF5312	0.53	+0.0
5,305,389	-		GFF5312	0.54	+0.2
5,305,389	-		GFF5312	0.54	-0.7
5,305,404	+		GFF5312	0.54	+1.1
5,305,405	-		GFF5312	0.54	-1.0
5,305,409	+		GFF5312	0.54	-0.3
5,305,409	+		GFF5312	0.54	-2.0
5,305,409	+		GFF5312	0.54	+0.9
5,305,411	+		GFF5312	0.54	-0.1
5,305,414	+		GFF5312	0.55	-0.7
5,305,414	+		GFF5312	0.55	-0.8
5,305,417	-		GFF5312	0.55	+0.7
5,305,422	-		GFF5312	0.55	-1.3
5,305,424	+		GFF5312	0.55	-1.4
5,305,424	+		GFF5312	0.55	+0.3
5,305,424	+		GFF5312	0.55	+0.2
5,305,424	+		GFF5312	0.55	-1.1
5,305,427	-		GFF5312	0.55	-0.4
5,305,427	-		GFF5312	0.55	-1.0
5,305,432	-		GFF5312	0.55	-0.4
5,305,432	-		GFF5312	0.55	-1.0
5,305,437	-		GFF5312	0.56	+0.4
5,305,468	+		GFF5312	0.57	+0.1
5,305,474	+		GFF5312	0.57	-0.9
5,305,482	-		GFF5312	0.57	-0.7
5,305,482	-		GFF5312	0.57	-2.4
5,305,484	-		GFF5312	0.57	-0.8
5,305,490	+		GFF5312	0.58	-1.9
5,305,490	-		GFF5312	0.58	-0.2
5,305,496	-		GFF5312	0.58	+0.5
5,305,515	+		GFF5312	0.59	-1.0
5,305,515	+		GFF5312	0.59	-0.1
5,305,515	+		GFF5312	0.59	-0.7
5,305,515	+		GFF5312	0.59	-0.7
5,305,515	+		GFF5312	0.59	-1.5
5,305,517	+		GFF5312	0.59	-2.6
5,305,523	-		GFF5312	0.59	-0.0
5,305,523	-		GFF5312	0.59	-1.2
5,305,586	+		GFF5312	0.62	-0.3
5,305,588	+		GFF5312	0.62	-2.1
5,305,599	+		GFF5312	0.62	+1.1
5,305,602	-		GFF5312	0.62	-1.6
5,305,603	-		GFF5312	0.62	+0.0
5,305,603	-		GFF5312	0.62	-1.9
5,305,603	-		GFF5312	0.62	-0.7
5,305,607	-		GFF5312	0.62	-1.5
5,305,648	+		GFF5312	0.64	-0.5
5,305,686	-		GFF5312	0.66	-2.0
5,305,714	+		GFF5312	0.67	-0.6
5,305,736	+		GFF5312	0.68	-0.4
5,305,744	+		GFF5312	0.68	-0.3
5,305,746	+		GFF5312	0.68	-0.2
5,305,746	+		GFF5312	0.68	-1.9
5,305,746	+		GFF5312	0.68	-1.0
5,305,750	+		GFF5312	0.68	-0.1
5,305,750	+		GFF5312	0.68	-1.3
5,305,754	-		GFF5312	0.68	+1.3
5,305,770	+		GFF5312	0.69	-1.7
5,305,781	-		GFF5312	0.69	+2.0
5,305,788	-		GFF5312	0.70	-0.6
5,305,819	+		GFF5312	0.71	-0.2
5,305,850	+		GFF5312	0.72	+0.2
5,305,850	+		GFF5312	0.72	+1.2
5,305,851	-		GFF5312	0.72	+0.8
5,305,851	-		GFF5312	0.72	+0.2
5,305,853	-		GFF5312	0.72	+2.1
5,305,857	+		GFF5312	0.72	-1.7
5,305,858	-		GFF5312	0.72	-0.0
5,305,874	+		GFF5312	0.73	-0.9
5,305,875	+		GFF5312	0.73	+0.7
5,305,882	-		GFF5312	0.73	+1.9
5,305,892	-		GFF5312	0.74	-0.8
5,305,892	-		GFF5312	0.74	-1.2
5,305,892	-		GFF5312	0.74	-0.9
5,305,894	+		GFF5312	0.74	-0.0
5,305,894	+		GFF5312	0.74	+0.4
5,305,897	-		GFF5312	0.74	-1.8
5,305,901	+		GFF5312	0.74	+0.2
5,305,910	+		GFF5312	0.75	-1.2
5,305,916	+		GFF5312	0.75	-2.0
5,305,924	-		GFF5312	0.75	-1.0
5,305,944	+		GFF5312	0.76	-2.0
5,305,944	+		GFF5312	0.76	-0.1
5,305,944	+		GFF5312	0.76	+0.3
5,305,944	+		GFF5312	0.76	-0.4
5,305,952	-		GFF5312	0.76	-1.6
5,305,952	-		GFF5312	0.76	-0.5
5,305,952	-		GFF5312	0.76	-0.6
5,305,952	-		GFF5312	0.76	+0.9
5,305,967	+		GFF5312	0.77	-1.0
5,305,973	+		GFF5312	0.77	-0.5
5,305,974	+		GFF5312	0.77	+0.1
5,305,981	-		GFF5312	0.77	-0.2
5,306,016	+		GFF5312	0.79	+0.6
5,306,016	+		GFF5312	0.79	+1.4
5,306,016	+		GFF5312	0.79	-2.0
5,306,016	-		GFF5312	0.79	-0.4
5,306,022	+		GFF5312	0.79	-1.1
5,306,024	-		GFF5312	0.79	+1.8
5,306,036	+		GFF5312	0.80	-1.0
5,306,064	-		GFF5312	0.81	-0.2
5,306,064	-		GFF5312	0.81	+0.8
5,306,064	-		GFF5312	0.81	-1.5
5,306,069	-		GFF5312	0.81	-0.4
5,306,098	+		GFF5312	0.82	+0.5
5,306,125	-		GFF5312	0.83	+0.1
5,306,137	-		GFF5312	0.84	-1.6
5,306,144	+		GFF5312	0.84	-0.0
5,306,271	-		GFF5312	0.89	-1.8
5,306,280	+		GFF5312	0.89	+0.3
5,306,357	+				+0.1
5,306,361	+				+0.1
5,306,386	-				-1.2
5,306,394	-				+0.2
5,306,438	+				-0.1
5,306,438	+				-0.1
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