Strain Fitness in Sphingobium sp. HT1-2 around GFF4834

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,817,188	+		GFF4832	0.32	-0.8
4,817,192	+		GFF4832	0.35	+0.0
4,817,193	-		GFF4832	0.36	-0.4
4,817,196	-		GFF4832	0.38	-0.4
4,817,197	+		GFF4832	0.39	-0.1
4,817,197	+		GFF4832	0.39	-0.4
4,817,197	+		GFF4832	0.39	-1.0
4,817,197	+		GFF4832	0.39	-0.7
4,817,197	+		GFF4832	0.39	+0.8
4,817,200	-		GFF4832	0.41	-0.2
4,817,205	-		GFF4832	0.45	+0.7
4,817,205	-		GFF4832	0.45	-0.4
4,817,205	-		GFF4832	0.45	-0.6
4,817,205	-		GFF4832	0.45	-0.1
4,817,205	-		GFF4832	0.45	+0.4
4,817,207	+		GFF4832	0.46	-0.8
4,817,210	-		GFF4832	0.48	-0.3
4,817,212	+		GFF4832	0.50	-1.8
4,817,217	-		GFF4832	0.54	-0.6
4,817,243	+		GFF4832	0.73	+0.3
4,817,271	+				-0.3
4,817,301	+				-0.6
4,817,306	+				-2.5
4,817,364	+		GFF4833	0.10	-0.2
4,817,419	+		GFF4833	0.17	-0.9
4,817,421	+		GFF4833	0.17	-0.8
4,817,426	-		GFF4833	0.18	-0.5
4,817,429	-		GFF4833	0.18	-0.8
4,817,443	+		GFF4833	0.20	-0.2
4,817,443	+		GFF4833	0.20	+0.0
4,817,443	+		GFF4833	0.20	-0.6
4,817,443	+		GFF4833	0.20	-0.2
4,817,450	-		GFF4833	0.20	-0.5
4,817,462	+		GFF4833	0.22	+0.3
4,817,462	+		GFF4833	0.22	-1.4
4,817,462	+		GFF4833	0.22	+1.1
4,817,462	+		GFF4833	0.22	+0.1
4,817,462	+		GFF4833	0.22	+0.2
4,817,462	+		GFF4833	0.22	-0.4
4,817,462	+		GFF4833	0.22	-0.5
4,817,470	-		GFF4833	0.23	+0.8
4,817,470	-		GFF4833	0.23	-1.2
4,817,477	-		GFF4833	0.24	+0.6
4,817,478	+		GFF4833	0.24	-1.4
4,817,481	-		GFF4833	0.24	+1.2
4,817,501	+		GFF4833	0.27	+0.2
4,817,512	+		GFF4833	0.28	+0.9
4,817,518	-		GFF4833	0.29	-1.4
4,817,518	-		GFF4833	0.29	-1.3
4,817,531	-		GFF4833	0.30	+0.2
4,817,536	+		GFF4833	0.31	+0.9
4,817,536	+		GFF4833	0.31	+0.5
4,817,536	+		GFF4833	0.31	-1.4
4,817,536	+		GFF4833	0.31	+0.2
4,817,536	+		GFF4833	0.31	-1.0
4,817,538	+		GFF4833	0.31	+0.3
4,817,544	-		GFF4833	0.32	-1.1
4,817,550	+		GFF4833	0.32	-1.2
4,817,558	-		GFF4833	0.33	+0.6
4,817,565	-		GFF4833	0.34	+0.2
4,817,575	-		GFF4833	0.35	-0.6
4,817,575	-		GFF4833	0.35	-1.4
4,817,585	+		GFF4833	0.37	-0.7
4,817,586	+		GFF4833	0.37	+1.4
4,817,586	+		GFF4833	0.37	+0.0
4,817,586	+		GFF4833	0.37	-0.1
4,817,591	+		GFF4833	0.37	+1.3
4,817,593	-		GFF4833	0.38	-1.4
4,817,599	-		GFF4833	0.38	-0.8
4,817,600	-		GFF4833	0.39	+0.2
4,817,606	-		GFF4833	0.39	+0.6
4,817,622	+		GFF4833	0.41	+0.6
4,817,622	+		GFF4833	0.41	-1.2
4,817,680	+		GFF4833	0.48	-1.2
4,817,680	+		GFF4833	0.48	-1.3
4,817,688	-		GFF4833	0.49	-0.7
4,817,688	-		GFF4833	0.49	+0.2
4,817,698	+		GFF4833	0.50	-1.3
4,817,706	-		GFF4833	0.51	-1.4
4,817,741	+		GFF4833	0.55	-0.9
4,817,748	-		GFF4833	0.56	+0.3
4,817,762	+		GFF4833	0.58	-0.6
4,817,762	+		GFF4833	0.58	-0.9
4,817,762	+		GFF4833	0.58	-0.9
4,817,762	+		GFF4833	0.58	+0.6
4,817,768	+		GFF4833	0.59	-0.1
4,817,770	-		GFF4833	0.59	-1.5
4,817,770	-		GFF4833	0.59	+0.2
4,817,770	-		GFF4833	0.59	-0.1
4,817,776	-		GFF4833	0.60	+0.7
4,817,786	+		GFF4833	0.61	-0.9
4,817,786	+		GFF4833	0.61	+0.2
4,817,786	+		GFF4833	0.61	+0.4
4,817,786	+		GFF4833	0.61	-1.9
4,817,786	+		GFF4833	0.61	-0.8
4,817,786	+		GFF4833	0.61	+1.1
4,817,786	+		GFF4833	0.61	+1.7
4,817,786	+		GFF4833	0.61	+0.6
4,817,794	-		GFF4833	0.62	-1.6
4,817,794	-		GFF4833	0.62	-1.0
4,817,794	-		GFF4833	0.62	-0.0
4,817,799	-		GFF4833	0.62	+0.9
4,817,806	+		GFF4833	0.63	-1.0
4,817,806	+		GFF4833	0.63	+0.6
4,817,806	+		GFF4833	0.63	-0.8
4,817,809	-		GFF4833	0.64	-1.2
4,817,814	-		GFF4833	0.64	-0.7
4,817,816	+		GFF4833	0.65	+0.1
4,817,816	+		GFF4833	0.65	-1.4
4,817,822	+		GFF4833	0.65	+1.2
4,817,840	-		GFF4833	0.67	+0.4
4,817,869	+		GFF4833	0.71	+1.1
4,817,887	+		GFF4833	0.73	-2.2
4,817,895	-		GFF4833	0.74	+0.2
4,817,897	-		GFF4833	0.74	+0.0
4,817,900	+		GFF4833	0.75	+0.1
4,817,915	-		GFF4833	0.76	-0.4
4,817,918	-		GFF4833	0.77	+0.7
4,817,918	-		GFF4833	0.77	+0.5
4,817,918	-		GFF4833	0.77	+0.3
4,817,918	-		GFF4833	0.77	-1.1
4,817,918	-		GFF4833	0.77	-0.1
4,817,918	-		GFF4833	0.77	-1.1
4,817,920	+		GFF4833	0.77	+0.1
4,817,920	+		GFF4833	0.77	-2.1
4,817,920	+		GFF4833	0.77	-0.4
4,817,965	+		GFF4833	0.82	-0.8
4,817,965	+		GFF4833	0.82	-0.9
4,817,965	+		GFF4833	0.82	-1.4
4,817,965	+		GFF4833	0.82	-0.6
4,817,973	-		GFF4833	0.83	-1.3
4,817,973	-		GFF4833	0.83	-0.8
4,817,977	+		GFF4833	0.84	-1.0
4,817,977	+		GFF4833	0.84	+1.0
4,817,977	+		GFF4833	0.84	-1.1
4,817,984	-		GFF4833	0.85	-0.8
4,817,985	-		GFF4833	0.85	-1.0
4,817,985	-		GFF4833	0.85	-0.9
4,817,985	-		GFF4833	0.85	-0.9
4,817,987	+		GFF4833	0.85	+0.2
4,817,987	+		GFF4833	0.85	+0.6
4,817,993	-		GFF4833	0.86	-1.8
4,818,007	+		GFF4833	0.87	-1.2
4,818,057	+				+0.3
4,818,057	+				+0.3
4,818,057	+				-0.0
4,818,058	+				-2.0
4,818,065	-				-1.7
4,818,088	-				+0.4
4,818,090	+				+0.5
4,818,113	+				+1.2
4,818,131	+				+1.9
4,818,136	-				+0.5
4,818,139	-				-1.8
4,818,146	+				-0.3
4,818,188	-				-0.9
4,818,190	+				-0.5
4,818,198	-				-0.8
4,818,246	+		GFF4834	0.10	+0.5
4,818,264	+		GFF4834	0.13	-0.5
4,818,272	+		GFF4834	0.15	+1.3
4,818,272	-		GFF4834	0.15	-1.0
4,818,272	-		GFF4834	0.15	-0.1
4,818,313	+		GFF4834	0.22	+0.6
4,818,318	+		GFF4834	0.23	-0.2
4,818,326	-		GFF4834	0.24	+0.2
4,818,335	+		GFF4834	0.26	+0.1
4,818,343	-		GFF4834	0.27	-0.1
4,818,363	-		GFF4834	0.30	-0.1
4,818,387	-		GFF4834	0.35	+0.5
4,818,387	-		GFF4834	0.35	-0.7
4,818,397	-		GFF4834	0.36	-0.6
4,818,487	-		GFF4834	0.52	-1.9
4,818,523	+		GFF4834	0.58	-0.9
4,818,536	+		GFF4834	0.60	-0.6
4,818,539	-		GFF4834	0.61	+0.2
4,818,556	+		GFF4834	0.64	-0.6
4,818,564	-		GFF4834	0.65	+0.4
4,818,564	-		GFF4834	0.65	-1.0
4,818,571	-		GFF4834	0.66	-1.2
4,818,574	-		GFF4834	0.67	+0.5
4,818,581	-		GFF4834	0.68	-0.3
4,818,588	+		GFF4834	0.69	-0.9
4,818,601	-		GFF4834	0.72	+1.2
4,818,629	-		GFF4834	0.76	-1.3
4,818,642	-		GFF4834	0.79	+0.6
4,818,642	-		GFF4834	0.79	+0.0
4,818,644	+		GFF4834	0.79	-0.9
4,818,653	-		GFF4834	0.80	+1.2
4,818,734	+				-0.5
4,818,734	+				-1.3
4,818,739	+				-0.6
4,818,739	+				-1.2
4,818,739	+				-1.2
4,818,742	-				-1.3
4,818,742	-				-0.6
4,818,755	+				+0.5
4,818,771	+				+0.1
4,818,773	-				-0.6
4,818,898	+				-0.4
4,818,898	+				+0.1
4,818,946	+				-0.3
4,818,948	+				+1.4
4,818,948	+				-1.0
4,818,953	+				-0.1
4,818,956	-				-0.3
4,818,972	+				-0.5
4,818,972	+				-0.2
4,818,972	+				-0.8
4,818,972	+				-1.3
4,818,972	+				+0.4
4,818,980	-				-0.9
4,818,980	-				-1.6
4,818,980	-				-1.0
4,818,980	-				+0.4
4,818,991	+				-1.4
4,819,002	-				+0.3
4,819,018	+		GFF4835	0.12	-0.3
4,819,018	+		GFF4835	0.12	-0.4
4,819,018	+		GFF4835	0.12	-1.2
4,819,018	+		GFF4835	0.12	+0.2
4,819,020	-		GFF4835	0.12	-1.6
4,819,026	-		GFF4835	0.12	-1.7
4,819,026	-		GFF4835	0.12	+0.4
4,819,026	-		GFF4835	0.12	-0.9
4,819,026	-		GFF4835	0.12	+0.6
4,819,036	-		GFF4835	0.13	-1.6
4,819,109	-		GFF4835	0.21	+1.4
4,819,119	+		GFF4835	0.22	+0.1
4,819,124	+		GFF4835	0.22	-1.1
4,819,124	+		GFF4835	0.22	-1.5
4,819,132	-		GFF4835	0.23	-0.8
4,819,132	-		GFF4835	0.23	+0.0
4,819,147	-		GFF4835	0.25	-1.2
4,819,150	+		GFF4835	0.25	+0.1
4,819,171	-		GFF4835	0.27	-1.3
4,819,174	-		GFF4835	0.27	-0.3
4,819,201	-		GFF4835	0.30	+0.1
4,819,207	-		GFF4835	0.31	+0.2
4,819,217	-		GFF4835	0.32	+0.9
4,819,218	-		GFF4835	0.32	-2.3
4,819,219	+		GFF4835	0.32	+0.7
4,819,219	+		GFF4835	0.32	-1.3
4,819,262	-		GFF4835	0.36	+1.4
4,819,276	+		GFF4835	0.38	+0.3
4,819,288	+		GFF4835	0.39	-2.2
4,819,290	+		GFF4835	0.39	-0.8
4,819,290	+		GFF4835	0.39	-1.6
4,819,290	+		GFF4835	0.39	-1.6
4,819,298	-		GFF4835	0.40	+0.9
4,819,304	+		GFF4835	0.40	+0.1
4,819,304	+		GFF4835	0.40	-2.3
4,819,304	+		GFF4835	0.40	-1.2
4,819,312	-		GFF4835	0.41	-0.2
4,819,315	-		GFF4835	0.42	+0.5
4,819,358	+		GFF4835	0.46	-1.1
4,819,363	+		GFF4835	0.46	+0.9
4,819,363	+		GFF4835	0.46	-0.9
4,819,365	+		GFF4835	0.47	+1.2
4,819,371	-		GFF4835	0.47	-1.7
4,819,371	-		GFF4835	0.47	+0.4
4,819,371	-		GFF4835	0.47	-0.4
4,819,373	+		GFF4835	0.47	-0.3
4,819,379	+		GFF4835	0.48	-1.2
4,819,387	+		GFF4835	0.49	-1.7
4,819,387	+		GFF4835	0.49	-0.2
4,819,389	+		GFF4835	0.49	+1.4
4,819,389	+		GFF4835	0.49	+0.3
4,819,389	+		GFF4835	0.49	-1.3
4,819,395	-		GFF4835	0.50	-1.7
4,819,420	-		GFF4835	0.52	-1.4
4,819,449	+		GFF4835	0.55	-2.3
4,819,461	+		GFF4835	0.56	-0.4
4,819,464	-		GFF4835	0.57	+0.7
4,819,464	-		GFF4835	0.57	+0.1
4,819,464	-		GFF4835	0.57	+0.2
4,819,477	+		GFF4835	0.58	-0.5
4,819,501	-		GFF4835	0.60	+0.1
4,819,503	+		GFF4835	0.61	-1.1
4,819,507	+		GFF4835	0.61	+0.2
4,819,546	-		GFF4835	0.65	-0.4
4,819,566	+		GFF4835	0.67	-1.0
4,819,566	+		GFF4835	0.67	-0.0
4,819,574	-		GFF4835	0.68	+0.3
4,819,574	-		GFF4835	0.68	-0.5
4,819,593	+		GFF4835	0.70	-0.6
4,819,599	+		GFF4835	0.70	+0.0
4,819,601	-		GFF4835	0.70	-0.9
4,819,609	-		GFF4835	0.71	+0.1
4,819,609	-		GFF4835	0.71	-0.0
4,819,613	+		GFF4835	0.72	-0.3
4,819,621	-		GFF4835	0.72	+0.8
4,819,621	-		GFF4835	0.72	-0.9
4,819,628	+		GFF4835	0.73	-1.5
4,819,632	-		GFF4835	0.74	-1.2
4,819,670	+		GFF4835	0.77	-1.0
4,819,680	+		GFF4835	0.78	-1.0
4,819,680	+		GFF4835	0.78	-0.8
4,819,680	+		GFF4835	0.78	-0.4
4,819,680	+		GFF4835	0.78	-1.1
4,819,682	+		GFF4835	0.79	+0.2
4,819,683	-		GFF4835	0.79	-0.3
4,819,688	-		GFF4835	0.79	+1.1
4,819,688	-		GFF4835	0.79	-0.3
4,819,688	-		GFF4835	0.79	+0.4
4,819,688	-		GFF4835	0.79	+0.2
4,819,688	-		GFF4835	0.79	+0.5
4,819,696	+		GFF4835	0.80	-0.3
4,819,696	+		GFF4835	0.80	-1.5
4,819,696	+		GFF4835	0.80	-1.5
4,819,696	-		GFF4835	0.80	-0.6
4,819,704	-		GFF4835	0.81	+0.1
4,819,710	-		GFF4835	0.81	-0.9
4,819,743	+		GFF4835	0.85	-1.8
4,819,756	-		GFF4835	0.86	-1.5