Strain Fitness in Sphingobium sp. HT1-2 around GFF4681

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,677,494	+		GFF4680	0.28	-0.7
4,677,502	-		GFF4680	0.29	+0.0
4,677,518	+		GFF4680	0.31	-0.4
4,677,526	-		GFF4680	0.31	-1.6
4,677,526	-		GFF4680	0.31	+0.1
4,677,526	-		GFF4680	0.31	-1.0
4,677,531	-		GFF4680	0.32	+1.1
4,677,531	-		GFF4680	0.32	-1.0
4,677,619	+		GFF4680	0.39	+0.5
4,677,624	+		GFF4680	0.40	+0.5
4,677,632	-		GFF4680	0.41	+1.4
4,677,649	-		GFF4680	0.42	+0.1
4,677,651	+		GFF4680	0.42	-0.8
4,677,651	+		GFF4680	0.42	-0.6
4,677,651	+		GFF4680	0.42	+0.1
4,677,659	-		GFF4680	0.43	-0.6
4,677,659	-		GFF4680	0.43	+1.2
4,677,661	+		GFF4680	0.43	-0.2
4,677,661	+		GFF4680	0.43	+0.9
4,677,701	+		GFF4680	0.47	-0.5
4,677,706	+		GFF4680	0.47	+0.9
4,677,708	-		GFF4680	0.47	+1.6
4,677,714	-		GFF4680	0.48	-0.1
4,677,714	-		GFF4680	0.48	-1.3
4,677,714	-		GFF4680	0.48	-1.0
4,677,761	+		GFF4680	0.52	-1.5
4,677,766	+		GFF4680	0.52	-0.6
4,677,783	+		GFF4680	0.54	-0.6
4,677,784	-		GFF4680	0.54	+0.4
4,677,802	+		GFF4680	0.56	-0.2
4,677,802	+		GFF4680	0.56	-1.0
4,677,809	-		GFF4680	0.56	-0.9
4,677,809	-		GFF4680	0.56	-0.5
4,677,836	-		GFF4680	0.59	-0.8
4,677,841	-		GFF4680	0.59	-0.5
4,677,864	+		GFF4680	0.61	-1.5
4,677,864	-		GFF4680	0.61	+0.8
4,677,872	-		GFF4680	0.62	-0.5
4,677,880	+		GFF4680	0.62	+0.5
4,677,921	+		GFF4680	0.66	+1.7
4,677,924	-		GFF4680	0.66	+1.1
4,677,924	-		GFF4680	0.66	-0.2
4,677,924	-		GFF4680	0.66	-0.5
4,677,924	-		GFF4680	0.66	+0.4
4,677,929	-		GFF4680	0.67	-0.6
4,677,929	-		GFF4680	0.67	+0.7
4,677,929	-		GFF4680	0.67	+1.2
4,677,938	+		GFF4680	0.68	-0.2
4,677,938	+		GFF4680	0.68	-0.5
4,677,938	+		GFF4680	0.68	-1.7
4,677,938	+		GFF4680	0.68	-0.1
4,677,938	+		GFF4680	0.68	-1.0
4,677,938	+		GFF4680	0.68	-0.1
4,677,938	+		GFF4680	0.68	+1.2
4,677,945	+		GFF4680	0.68	-1.1
4,677,946	-		GFF4680	0.68	-0.9
4,677,946	-		GFF4680	0.68	-1.6
4,677,946	-		GFF4680	0.68	-1.6
4,677,946	-		GFF4680	0.68	+0.5
4,677,948	+		GFF4680	0.68	+1.0
4,677,951	+		GFF4680	0.69	+0.6
4,677,951	-		GFF4680	0.69	+0.8
4,677,959	+		GFF4680	0.69	-1.6
4,677,968	-		GFF4680	0.70	-1.1
4,677,968	-		GFF4680	0.70	-0.9
4,677,970	+		GFF4680	0.70	-0.4
4,677,970	+		GFF4680	0.70	+0.4
4,677,970	+		GFF4680	0.70	-0.5
4,677,970	+		GFF4680	0.70	-1.2
4,677,970	+		GFF4680	0.70	+0.5
4,677,970	+		GFF4680	0.70	+0.6
4,677,970	+		GFF4680	0.70	-0.9
4,677,970	+		GFF4680	0.70	-0.6
4,677,973	-		GFF4680	0.71	-0.3
4,677,975	+		GFF4680	0.71	-0.6
4,677,975	+		GFF4680	0.71	+0.5
4,677,978	-		GFF4680	0.71	-1.1
4,677,978	-		GFF4680	0.71	-1.6
4,677,978	-		GFF4680	0.71	-0.5
4,677,978	-		GFF4680	0.71	-0.5
4,677,978	-		GFF4680	0.71	+0.5
4,677,979	+		GFF4680	0.71	+0.1
4,677,980	+		GFF4680	0.71	-1.6
4,678,005	+		GFF4680	0.73	+0.4
4,678,010	-		GFF4680	0.74	-0.6
4,678,019	+		GFF4680	0.75	-0.2
4,678,029	+		GFF4680	0.76	+0.8
4,678,029	+		GFF4680	0.76	+0.5
4,678,029	+		GFF4680	0.76	-1.1
4,678,029	+		GFF4680	0.76	+0.8
4,678,029	+		GFF4680	0.76	+1.6
4,678,029	+		GFF4680	0.76	-0.2
4,678,029	+		GFF4680	0.76	+1.1
4,678,029	+		GFF4680	0.76	+0.1
4,678,029	+		GFF4680	0.76	-0.1
4,678,029	+		GFF4680	0.76	-0.5
4,678,029	-		GFF4680	0.76	-2.0
4,678,037	-		GFF4680	0.76	-1.7
4,678,037	-		GFF4680	0.76	-0.2
4,678,037	-		GFF4680	0.76	-0.5
4,678,037	-		GFF4680	0.76	+0.6
4,678,037	-		GFF4680	0.76	+0.9
4,678,037	-		GFF4680	0.76	+1.6
4,678,037	-		GFF4680	0.76	-1.0
4,678,037	-		GFF4680	0.76	-0.1
4,678,043	+		GFF4680	0.77	+0.6
4,678,075	+		GFF4680	0.80	+0.4
4,678,095	+		GFF4680	0.81	-1.3
4,678,097	+		GFF4680	0.82	-0.1
4,678,097	+		GFF4680	0.82	-0.1
4,678,103	-		GFF4680	0.82	-0.6
4,678,105	-		GFF4680	0.82	-1.3
4,678,105	-		GFF4680	0.82	-1.4
4,678,105	-		GFF4680	0.82	+0.4
4,678,105	-		GFF4680	0.82	+0.9
4,678,105	-		GFF4680	0.82	-0.6
4,678,105	-		GFF4680	0.82	-0.0
4,678,115	+		GFF4680	0.83	-0.7
4,678,115	-		GFF4680	0.83	+0.0
4,678,120	+		GFF4680	0.84	-0.8
4,678,123	-		GFF4680	0.84	-1.9
4,678,129	-		GFF4680	0.84	-1.2
4,678,129	-		GFF4680	0.84	-0.3
4,678,133	-		GFF4680	0.85	-1.1
4,678,153	-		GFF4680	0.87	-1.0
4,678,163	+		GFF4680	0.87	-1.2
4,678,214	+				+0.7
4,678,214	+				-1.0
4,678,258	-				-1.1
4,678,260	-				-0.0
4,678,268	-				+1.5
4,678,270	+				-0.3
4,678,270	+				+0.3
4,678,278	-				-0.8
4,678,278	-				-0.8
4,678,278	-				+1.1
4,678,278	-				-1.2
4,678,287	-				+0.2
4,678,289	+				+0.1
4,678,294	+				+0.1
4,678,297	-				+0.4
4,678,311	-				+1.1
4,678,313	+				+0.5
4,678,339	+				-0.9
4,678,342	-				+0.5
4,678,357	+				-1.3
4,678,359	-				+0.8
4,678,359	-				+0.6
4,678,362	+				+0.8
4,678,370	-				-1.2
4,678,386	+				+0.2
4,678,390	+				-0.9
4,678,393	-				-1.5
4,678,398	-				-0.8
4,678,398	-				-0.1
4,678,401	+				-0.5
4,678,417	-				+0.5
4,678,417	-				-1.4
4,678,422	+				-0.2
4,678,422	+				-0.1
4,678,433	+				+0.2
4,678,433	+				+0.1
4,678,434	+				+0.4
4,678,435	-				-2.3
4,678,435	-				-1.7
4,678,439	+				+1.1
4,678,439	+				-0.9
4,678,439	+				-1.3
4,678,439	+				+0.1
4,678,441	-				+0.6
4,678,441	-				+0.1
4,678,442	-				-1.1
4,678,442	-				-2.1
4,678,442	-				-0.6
4,678,442	-				+0.7
4,678,449	+				-1.8
4,678,458	+				-1.2
4,678,458	+				+0.4
4,678,458	+				-0.2
4,678,463	+				+1.9
4,678,463	+				+0.7
4,678,463	+				-1.2
4,678,463	+				+1.7
4,678,463	+				-0.8
4,678,466	-				+0.1
4,678,468	+				-1.6
4,678,471	-				-0.8
4,678,471	-				-1.2
4,678,471	-				+0.2
4,678,482	+				+1.5
4,678,490	-				+0.7
4,678,490	-				+1.1
4,678,499	+				-1.0
4,678,506	+				-1.3
4,678,514	-				-0.2
4,678,514	-				-1.5
4,678,521	+				-0.1
4,678,527	+				-0.8
4,678,527	+				+0.3
4,678,529	-				-1.2
4,678,529	-				+0.4
4,678,533	-				-0.8
4,678,535	-				+0.8
4,678,535	-				-2.8
4,678,535	-				+1.5
4,678,573	+				-1.2
4,678,573	+				-0.7
4,678,573	+				+0.8
4,678,573	+				-0.5
4,678,581	-				+0.0
4,678,581	-				+0.2
4,678,581	-				-0.0
4,678,581	-				-1.4
4,678,643	+		GFF4681	0.11	+0.3
4,678,671	+		GFF4681	0.13	-1.2
4,678,679	-		GFF4681	0.13	+0.5
4,678,679	-		GFF4681	0.13	+0.2
4,678,679	-		GFF4681	0.13	-0.0
4,678,679	-		GFF4681	0.13	-0.5
4,678,679	-		GFF4681	0.13	-1.7
4,678,684	-		GFF4681	0.14	+0.5
4,678,692	-		GFF4681	0.14	+0.7
4,678,694	+		GFF4681	0.14	+0.5
4,678,704	-		GFF4681	0.15	-1.2
4,678,704	-		GFF4681	0.15	-0.7
4,678,739	-		GFF4681	0.18	-2.1
4,678,760	+		GFF4681	0.19	-1.8
4,678,765	+		GFF4681	0.19	+0.3
4,678,767	+		GFF4681	0.19	+0.4
4,678,767	+		GFF4681	0.19	+0.2
4,678,773	-		GFF4681	0.20	+0.3
4,678,802	-		GFF4681	0.22	-1.5
4,678,823	+		GFF4681	0.23	-0.5
4,678,823	+		GFF4681	0.23	-0.5
4,678,823	+		GFF4681	0.23	-1.0
4,678,823	+		GFF4681	0.23	-1.0
4,678,823	+		GFF4681	0.23	-1.6
4,678,823	+		GFF4681	0.23	+1.1
4,678,823	+		GFF4681	0.23	+0.4
4,678,823	+		GFF4681	0.23	-1.5
4,678,823	+		GFF4681	0.23	+0.7
4,678,831	-		GFF4681	0.24	-0.8
4,678,831	-		GFF4681	0.24	-1.0
4,678,831	-		GFF4681	0.24	+0.7
4,678,831	-		GFF4681	0.24	+0.2
4,678,831	-		GFF4681	0.24	+0.1
4,678,835	-		GFF4681	0.24	-0.8
4,678,836	-		GFF4681	0.24	+0.1
4,678,903	-		GFF4681	0.29	-0.2
4,678,909	-		GFF4681	0.29	-0.3
4,678,909	-		GFF4681	0.29	+1.1
4,678,952	-		GFF4681	0.32	-0.7
4,678,963	-		GFF4681	0.33	-0.7
4,678,963	-		GFF4681	0.33	-1.3
4,678,982	+		GFF4681	0.34	-0.2
4,678,982	+		GFF4681	0.34	+0.5
4,678,990	-		GFF4681	0.35	-1.3
4,678,990	-		GFF4681	0.35	-0.0
4,678,992	-		GFF4681	0.35	-0.1
4,679,019	+		GFF4681	0.37	-0.2
4,679,019	+		GFF4681	0.37	-1.1
4,679,019	+		GFF4681	0.37	-0.9
4,679,019	+		GFF4681	0.37	-0.8
4,679,103	+		GFF4681	0.43	-0.6
4,679,153	+		GFF4681	0.46	-0.9
4,679,156	+		GFF4681	0.46	+1.3
4,679,156	+		GFF4681	0.46	+0.5
4,679,156	+		GFF4681	0.46	+0.1
4,679,164	-		GFF4681	0.47	+1.0
4,679,179	+		GFF4681	0.48	-1.4
4,679,179	+		GFF4681	0.48	-1.6
4,679,208	-		GFF4681	0.50	-1.7
4,679,250	-		GFF4681	0.53	+0.3
4,679,271	-		GFF4681	0.54	-1.0
4,679,311	+		GFF4681	0.57	+0.0
4,679,314	-		GFF4681	0.57	+0.6
4,679,353	+		GFF4681	0.60	+0.2
4,679,404	+		GFF4681	0.63	+0.3
4,679,404	+		GFF4681	0.63	+0.5
4,679,404	+		GFF4681	0.63	+1.1
4,679,411	+		GFF4681	0.64	+0.9
4,679,419	-		GFF4681	0.64	-0.7
4,679,428	+		GFF4681	0.65	-0.7
4,679,431	-		GFF4681	0.65	-1.2
4,679,442	+		GFF4681	0.66	-1.7
4,679,471	+		GFF4681	0.68	+0.1
4,679,474	-		GFF4681	0.68	-1.5
4,679,477	+		GFF4681	0.68	-1.5
4,679,482	+		GFF4681	0.69	+1.4
4,679,528	-		GFF4681	0.72	-0.4
4,679,539	+		GFF4681	0.73	+0.8
4,679,584	-		GFF4681	0.76	-1.2
4,679,611	-		GFF4681	0.77	-0.5
4,679,637	+		GFF4681	0.79	+0.3
4,679,637	+		GFF4681	0.79	-0.9
4,679,637	+		GFF4681	0.79	-1.3
4,679,645	-		GFF4681	0.80	-0.9
4,679,647	+		GFF4681	0.80	+0.2
4,679,647	+		GFF4681	0.80	-1.0
4,679,655	-		GFF4681	0.80	+0.3
4,679,655	-		GFF4681	0.80	-1.2
4,679,663	+		GFF4681	0.81	-2.3
4,679,668	+		GFF4681	0.81	+1.2
4,679,668	+		GFF4681	0.81	+1.1
4,679,668	+		GFF4681	0.81	-0.5
4,679,668	+		GFF4681	0.81	-0.7
4,679,674	+		GFF4681	0.82	+0.3
4,679,675	+		GFF4681	0.82	+0.4
4,679,677	-		GFF4681	0.82	-0.2
4,679,684	-		GFF4681	0.82	-0.4
4,679,686	+		GFF4681	0.83	+0.1
4,679,716	-		GFF4681	0.85	+1.6
4,679,716	-		GFF4681	0.85	+0.4
4,679,734	+		GFF4681	0.86	+0.2
4,679,734	+		GFF4681	0.86	-0.6
4,679,734	+		GFF4681	0.86	+0.8
4,679,739	+		GFF4681	0.86	+0.2
4,679,742	-		GFF4681	0.86	-0.3
4,679,749	+		GFF4681	0.87	-1.2
4,679,749	+		GFF4681	0.87	+1.8
4,679,749	+		GFF4681	0.87	-0.1
4,679,782	+		GFF4681	0.89	-0.8
4,679,782	+		GFF4681	0.89	-2.6
4,679,790	-		GFF4681	0.90	+1.5
4,679,790	-		GFF4681	0.90	-0.1
4,679,790	-		GFF4681	0.90	-0.1
4,679,790	-		GFF4681	0.90	-0.7
4,679,790	-		GFF4681	0.90	-1.1
4,679,790	-		GFF4681	0.90	-0.2
4,679,839	+				-0.4
4,679,844	+				-0.8
4,679,860	+				-0.7
4,679,877	+				-1.9
4,679,895	-				-0.5
4,679,914	+				-1.0
4,679,914	+				-0.6
4,679,914	+				-1.0
4,679,914	+				-0.5
4,679,914	+				-0.8
4,679,922	-				-0.4
4,679,922	-				+0.4
4,679,922	-				+0.4
4,679,932	+				-1.2
4,679,933	+				+0.2
4,679,939	+				-1.5
4,679,939	+				-0.1
4,679,941	-				+1.1
4,679,941	-				+0.6
4,679,941	-				-0.8
4,679,941	-				-0.4
4,679,956	+				+0.3
4,679,957	-				-0.2
4,679,964	-				-0.2
4,679,978	+				-0.9
4,679,981	+				+1.3
4,679,984	-				-0.9
4,679,988	-				-0.9
4,679,989	-				-0.0
4,679,991	-				-1.0
4,680,060	+				-0.8
4,680,075	-				+0.0
4,680,079	+				-1.9
4,680,087	-				-0.5
4,680,092	-				-0.1
4,680,122	-				-1.2
4,680,122	-				-0.3
4,680,147	-				-0.7
4,680,165	-				-2.7
4,680,165	-				-1.5
4,680,175	+				-0.7
4,680,196	+		GFF4682	0.11	+0.3
4,680,225	+		GFF4682	0.12	-0.8
4,680,233	-		GFF4682	0.12	+1.1
4,680,233	-		GFF4682	0.12	+0.5
4,680,233	-		GFF4682	0.12	+0.1
4,680,233	-		GFF4682	0.12	+0.5
4,680,252	+		GFF4682	0.13	-0.8
4,680,260	-		GFF4682	0.13	-1.1
4,680,278	+		GFF4682	0.14	+0.4
4,680,281	-		GFF4682	0.14	+0.4
4,680,281	-		GFF4682	0.14	+0.6
4,680,283	+		GFF4682	0.14	-0.5
4,680,283	+		GFF4682	0.14	-0.5
4,680,288	+		GFF4682	0.15	+0.8
4,680,291	-		GFF4682	0.15	-0.5
4,680,293	+		GFF4682	0.15	-0.4
4,680,293	+		GFF4682	0.15	-0.1
4,680,293	+		GFF4682	0.15	+1.7
4,680,293	+		GFF4682	0.15	-0.6
4,680,293	+		GFF4682	0.15	-0.5
4,680,301	-		GFF4682	0.15	+0.6
4,680,301	-		GFF4682	0.15	-0.6
4,680,301	-		GFF4682	0.15	-0.1
4,680,301	-		GFF4682	0.15	+1.1
4,680,303	+		GFF4682	0.15	-0.1
4,680,311	-		GFF4682	0.15	-1.7
4,680,311	-		GFF4682	0.15	-0.5
4,680,316	-		GFF4682	0.16	+0.2
4,680,327	+		GFF4682	0.16	-0.9
4,680,332	+		GFF4682	0.16	-1.3
4,680,335	-		GFF4682	0.16	-1.0
4,680,335	-		GFF4682	0.16	-0.8
4,680,372	+		GFF4682	0.18	-0.2
4,680,372	+		GFF4682	0.18	-0.1
4,680,372	+		GFF4682	0.18	+0.9
4,680,380	-		GFF4682	0.18	-0.6
4,680,385	-		GFF4682	0.19	+0.2
4,680,408	+		GFF4682	0.20	+0.0
4,680,408	+		GFF4682	0.20	-0.1
4,680,408	+		GFF4682	0.20	-0.4
4,680,416	-		GFF4682	0.20	+0.1
4,680,455	-		GFF4682	0.22	-1.3
4,680,457	+		GFF4682	0.22	+0.3
4,680,464	-		GFF4682	0.22	-0.5
4,680,469	+		GFF4682	0.22	-0.1
4,680,471	+		GFF4682	0.22	-1.5
4,680,515	+		GFF4682	0.24	-0.5
4,680,523	+		GFF4682	0.24	-2.8
4,680,535	+		GFF4682	0.25	-0.7
4,680,541	+		GFF4682	0.25	-0.7
4,680,543	-		GFF4682	0.25	-1.0
4,680,545	+		GFF4682	0.25	+1.2
4,680,545	+		GFF4682	0.25	-0.5
4,680,545	+		GFF4682	0.25	-0.9
4,680,545	+		GFF4682	0.25	-0.7
4,680,545	+		GFF4682	0.25	-1.3
4,680,545	+		GFF4682	0.25	+0.2
4,680,545	+		GFF4682	0.25	+0.5
4,680,545	+		GFF4682	0.25	+0.4
4,680,545	+		GFF4682	0.25	+0.1
4,680,553	-		GFF4682	0.26	+1.3
4,680,553	-		GFF4682	0.26	-0.8
4,680,553	-		GFF4682	0.26	-0.5
4,680,553	-		GFF4682	0.26	+0.2
4,680,553	-		GFF4682	0.26	-2.6
4,680,553	-		GFF4682	0.26	-0.8
4,680,615	+		GFF4682	0.28	+0.3
4,680,669	+		GFF4682	0.31	+0.7
4,680,700	+		GFF4682	0.32	-1.0
4,680,725	+		GFF4682	0.33	-0.7
4,680,733	-		GFF4682	0.33	-1.2
4,680,767	-		GFF4682	0.35	-2.1
4,680,767	-		GFF4682	0.35	+0.2
4,680,769	+		GFF4682	0.35	-0.1
4,680,776	+		GFF4682	0.35	-0.5
4,680,777	-		GFF4682	0.35	-1.1
4,680,777	-		GFF4682	0.35	-0.2
4,680,784	-		GFF4682	0.35	-0.5
4,680,821	-		GFF4682	0.37	+0.4
4,680,832	+		GFF4682	0.37	-0.5
4,680,848	+		GFF4682	0.38	-1.2
4,680,868	+		GFF4682	0.39	+0.7
4,680,921	+		GFF4682	0.41	+0.3
4,680,921	+		GFF4682	0.41	+0.5
4,680,929	-		GFF4682	0.41	+0.1
4,680,929	-		GFF4682	0.41	-0.9
4,680,935	+		GFF4682	0.42	-0.1