Strain Fitness in Sphingobium sp. HT1-2 around GFF4494

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,484,567	-				+0.4
4,484,572	+				+1.2
4,484,580	-				+0.2
4,484,610	+				-1.3
4,484,610	+				-0.1
4,484,611	-				-0.8
4,484,611	-				-1.1
4,484,611	-				-0.7
4,484,616	-				-1.0
4,484,616	-				-0.9
4,484,622	+				-0.2
4,484,622	+				+0.0
4,484,635	-				+1.2
4,484,639	-				-1.1
4,484,645	+				+0.7
4,484,653	-				-1.2
4,484,653	-				+0.3
4,484,653	-				-0.8
4,484,653	-				-0.8
4,484,653	-				-0.4
4,484,663	-		GFF4493	0.10	-1.8
4,484,663	-		GFF4493	0.10	+1.4
4,484,668	+		GFF4493	0.11	+0.4
4,484,676	-		GFF4493	0.12	+0.7
4,484,676	-		GFF4493	0.12	+0.4
4,484,676	-		GFF4493	0.12	+0.2
4,484,689	+		GFF4493	0.13	+0.0
4,484,691	-		GFF4493	0.13	+0.6
4,484,698	+		GFF4493	0.14	+0.8
4,484,706	-		GFF4493	0.15	-0.3
4,484,707	-		GFF4493	0.15	+0.1
4,484,724	+		GFF4493	0.17	-1.1
4,484,765	-		GFF4493	0.22	-1.0
4,484,770	+		GFF4493	0.22	-2.0
4,484,770	+		GFF4493	0.22	-1.5
4,484,778	-		GFF4493	0.23	-0.7
4,484,778	-		GFF4493	0.23	-0.8
4,484,778	-		GFF4493	0.23	+0.2
4,484,778	-		GFF4493	0.23	+1.1
4,484,778	-		GFF4493	0.23	-1.0
4,484,780	+		GFF4493	0.23	+0.4
4,484,820	+		GFF4493	0.28	+0.4
4,484,820	+		GFF4493	0.28	-1.1
4,484,820	+		GFF4493	0.28	+0.8
4,484,820	+		GFF4493	0.28	-0.2
4,484,825	+		GFF4493	0.28	-1.3
4,484,828	-		GFF4493	0.29	+1.3
4,484,828	-		GFF4493	0.29	-0.2
4,484,828	-		GFF4493	0.29	-0.2
4,484,828	-		GFF4493	0.29	-0.1
4,484,828	-		GFF4493	0.29	+1.7
4,484,828	-		GFF4493	0.29	-0.2
4,484,828	-		GFF4493	0.29	-1.3
4,484,828	-		GFF4493	0.29	-0.8
4,484,833	-		GFF4493	0.29	+0.6
4,484,839	+		GFF4493	0.30	-1.6
4,484,848	-		GFF4493	0.31	-0.6
4,484,864	-		GFF4493	0.33	-0.7
4,484,892	-		GFF4493	0.36	+1.6
4,484,910	-		GFF4493	0.38	-1.6
4,484,933	+		GFF4493	0.41	-0.6
4,484,981	+		GFF4493	0.46	-0.6
4,484,981	+		GFF4493	0.46	+1.1
4,484,981	+		GFF4493	0.46	+0.3
4,484,981	+		GFF4493	0.46	+0.4
4,484,981	+		GFF4493	0.46	+0.4
4,484,981	+		GFF4493	0.46	-0.6
4,484,981	+		GFF4493	0.46	-0.6
4,484,981	+		GFF4493	0.46	-0.8
4,484,981	+		GFF4493	0.46	-0.6
4,484,989	-		GFF4493	0.47	-0.1
4,484,989	-		GFF4493	0.47	+0.4
4,484,989	-		GFF4493	0.47	+0.9
4,484,989	-		GFF4493	0.47	-0.3
4,484,989	-		GFF4493	0.47	-0.6
4,484,989	-		GFF4493	0.47	-0.6
4,484,989	-		GFF4493	0.47	-1.0
4,484,989	-		GFF4493	0.47	-0.7
4,484,989	-		GFF4493	0.47	-1.7
4,484,989	-		GFF4493	0.47	-0.7
4,484,989	-		GFF4493	0.47	+0.0
4,484,989	-		GFF4493	0.47	-1.1
4,484,989	-		GFF4493	0.47	-1.5
4,484,989	-		GFF4493	0.47	-0.0
4,484,996	-		GFF4493	0.48	+0.4
4,485,010	+		GFF4493	0.49	-0.0
4,485,010	+		GFF4493	0.49	+1.2
4,485,010	+		GFF4493	0.49	+0.6
4,485,010	+		GFF4493	0.49	-2.2
4,485,015	+		GFF4493	0.50	-0.5
4,485,018	-		GFF4493	0.50	+0.3
4,485,018	-		GFF4493	0.50	+0.2
4,485,018	-		GFF4493	0.50	+0.7
4,485,018	-		GFF4493	0.50	+0.5
4,485,018	-		GFF4493	0.50	+1.7
4,485,020	+		GFF4493	0.50	-0.2
4,485,020	+		GFF4493	0.50	-0.6
4,485,023	-		GFF4493	0.51	+1.1
4,485,023	-		GFF4493	0.51	-0.6
4,485,023	-		GFF4493	0.51	+0.0
4,485,023	-		GFF4493	0.51	-0.3
4,485,028	-		GFF4493	0.51	-1.1
4,485,028	-		GFF4493	0.51	-0.2
4,485,028	-		GFF4493	0.51	+0.1
4,485,028	-		GFF4493	0.51	-0.7
4,485,028	-		GFF4493	0.51	+0.0
4,485,042	+		GFF4493	0.53	-1.0
4,485,043	+		GFF4493	0.53	-0.8
4,485,071	+		GFF4493	0.56	+1.1
4,485,071	+		GFF4493	0.56	-1.6
4,485,078	-		GFF4493	0.57	+0.3
4,485,079	-		GFF4493	0.57	-1.6
4,485,085	+		GFF4493	0.58	-0.9
4,485,085	+		GFF4493	0.58	-0.3
4,485,093	-		GFF4493	0.59	-0.6
4,485,093	-		GFF4493	0.59	+0.5
4,485,093	-		GFF4493	0.59	+1.0
4,485,119	+		GFF4493	0.62	-0.7
4,485,124	+		GFF4493	0.62	-0.0
4,485,124	+		GFF4493	0.62	-0.7
4,485,132	-		GFF4493	0.63	-0.2
4,485,202	+		GFF4493	0.71	-1.1
4,485,210	-		GFF4493	0.72	+0.3
4,485,236	+		GFF4493	0.75	-1.4
4,485,236	+		GFF4493	0.75	-0.3
4,485,244	-		GFF4493	0.76	-1.1
4,485,247	+		GFF4493	0.76	-0.3
4,485,254	+		GFF4493	0.77	-2.2
4,485,257	-		GFF4493	0.77	+0.4
4,485,290	+		GFF4493	0.81	-0.8
4,485,295	+		GFF4493	0.81	+0.9
4,485,295	+		GFF4493	0.81	+0.0
4,485,295	+		GFF4493	0.81	-1.4
4,485,295	+		GFF4493	0.81	+0.7
4,485,295	+		GFF4493	0.81	+1.6
4,485,295	+		GFF4493	0.81	-0.9
4,485,295	+		GFF4493	0.81	-0.2
4,485,298	-		GFF4493	0.82	-0.8
4,485,298	-		GFF4493	0.82	-1.6
4,485,298	-		GFF4493	0.82	-0.7
4,485,300	+		GFF4493	0.82	-1.6
4,485,303	-		GFF4493	0.82	-0.8
4,485,303	-		GFF4493	0.82	-0.3
4,485,303	-		GFF4493	0.82	-1.6
4,485,303	-		GFF4493	0.82	+0.0
4,485,303	-		GFF4493	0.82	-0.4
4,485,303	-		GFF4493	0.82	-0.9
4,485,318	-		GFF4493	0.84	+0.9
4,485,326	+		GFF4493	0.85	-1.0
4,485,377	-				+0.7
4,485,417	+				-1.3
4,485,417	+				+0.0
4,485,417	+				-0.8
4,485,417	+				-0.2
4,485,467	+				-0.6
4,485,475	-				-2.0
4,485,475	-				+0.9
4,485,475	-				-0.7
4,485,511	-				-0.0
4,485,554	+				+0.3
4,485,566	+				-2.0
4,485,566	+				+1.0
4,485,572	-				+1.5
4,485,574	+				+0.2
4,485,574	-				-0.6
4,485,579	-				-0.2
4,485,587	+				+0.7
4,485,595	-				+0.4
4,485,595	-				+0.2
4,485,597	+				-0.6
4,485,605	-				-1.1
4,485,615	+				+0.6
4,485,615	+				+1.1
4,485,623	-				-0.2
4,485,644	-				+0.2
4,485,699	-				+1.0
4,485,763	-				-1.0
4,485,771	+				-0.6
4,485,800	+				+0.4
4,485,819	+		GFF4494	0.11	-1.2
4,485,824	+		GFF4494	0.11	-1.2
4,485,825	+		GFF4494	0.11	+1.6
4,485,825	+		GFF4494	0.11	-0.3
4,485,830	+		GFF4494	0.11	-0.4
4,485,830	+		GFF4494	0.11	-1.8
4,485,833	-		GFF4494	0.11	+0.5
4,485,833	-		GFF4494	0.11	-1.0
4,485,833	-		GFF4494	0.11	-0.7
4,485,833	-		GFF4494	0.11	+0.0
4,485,835	+		GFF4494	0.11	-0.4
4,485,835	+		GFF4494	0.11	+1.0
4,485,844	+		GFF4494	0.12	-0.6
4,485,844	+		GFF4494	0.12	+0.3
4,485,844	+		GFF4494	0.12	+0.8
4,485,852	-		GFF4494	0.12	-0.9
4,485,863	-		GFF4494	0.13	-1.8
4,485,864	-		GFF4494	0.13	-0.1
4,485,874	-		GFF4494	0.13	+0.5
4,485,874	-		GFF4494	0.13	-0.6
4,485,876	+		GFF4494	0.13	-0.7
4,485,884	+		GFF4494	0.14	+1.4
4,485,923	+		GFF4494	0.15	+0.5
4,485,931	-		GFF4494	0.15	+0.0
4,485,942	+		GFF4494	0.16	-1.4
4,485,942	+		GFF4494	0.16	+0.4
4,485,942	+		GFF4494	0.16	+0.0
4,485,942	+		GFF4494	0.16	-0.3
4,485,942	+		GFF4494	0.16	-1.5
4,485,950	-		GFF4494	0.16	-2.1
4,485,950	-		GFF4494	0.16	-0.2
4,485,952	-		GFF4494	0.16	-1.3
4,485,975	+		GFF4494	0.17	+0.5
4,485,993	-		GFF4494	0.18	-0.8
4,485,995	-		GFF4494	0.18	+0.8
4,486,012	+		GFF4494	0.19	-1.0
4,486,019	+		GFF4494	0.19	+0.4
4,486,022	+		GFF4494	0.19	+0.2
4,486,022	+		GFF4494	0.19	-0.8
4,486,022	+		GFF4494	0.19	-0.6
4,486,022	+		GFF4494	0.19	-2.1
4,486,022	+		GFF4494	0.19	+0.6
4,486,024	+		GFF4494	0.19	-0.4
4,486,024	+		GFF4494	0.19	-0.1
4,486,024	+		GFF4494	0.19	-1.0
4,486,024	+		GFF4494	0.19	+0.0
4,486,029	+		GFF4494	0.20	+1.3
4,486,030	-		GFF4494	0.20	-0.8
4,486,030	-		GFF4494	0.20	+1.2
4,486,030	-		GFF4494	0.20	+1.3
4,486,030	-		GFF4494	0.20	-0.5
4,486,030	-		GFF4494	0.20	-2.0
4,486,030	-		GFF4494	0.20	+0.1
4,486,030	-		GFF4494	0.20	+0.5
4,486,034	+		GFF4494	0.20	-0.6
4,486,034	+		GFF4494	0.20	+0.4
4,486,037	-		GFF4494	0.20	-0.5
4,486,039	+		GFF4494	0.20	-1.3
4,486,039	+		GFF4494	0.20	-0.9
4,486,039	+		GFF4494	0.20	+0.1
4,486,039	+		GFF4494	0.20	+0.2
4,486,039	+		GFF4494	0.20	-0.7
4,486,039	+		GFF4494	0.20	-1.1
4,486,039	+		GFF4494	0.20	-0.8
4,486,039	+		GFF4494	0.20	-1.3
4,486,039	+		GFF4494	0.20	-0.6
4,486,039	+		GFF4494	0.20	+0.2
4,486,039	+		GFF4494	0.20	+0.7
4,486,042	-		GFF4494	0.20	-0.3
4,486,042	-		GFF4494	0.20	-1.2
4,486,042	-		GFF4494	0.20	-0.9
4,486,047	-		GFF4494	0.20	-0.2
4,486,047	-		GFF4494	0.20	+1.1
4,486,047	-		GFF4494	0.20	-1.0
4,486,047	-		GFF4494	0.20	+0.3
4,486,047	-		GFF4494	0.20	-1.0
4,486,047	-		GFF4494	0.20	+0.2
4,486,047	-		GFF4494	0.20	+1.1
4,486,047	-		GFF4494	0.20	-0.3
4,486,047	-		GFF4494	0.20	-0.5
4,486,058	+		GFF4494	0.21	+1.0
4,486,058	+		GFF4494	0.21	-0.1
4,486,058	-		GFF4494	0.21	+0.1
4,486,066	-		GFF4494	0.21	+0.8
4,486,067	+		GFF4494	0.21	-1.6
4,486,082	+		GFF4494	0.22	+0.2
4,486,087	+		GFF4494	0.22	-0.6
4,486,092	+		GFF4494	0.22	+1.0
4,486,092	+		GFF4494	0.22	-0.9
4,486,092	+		GFF4494	0.22	+0.6
4,486,092	+		GFF4494	0.22	+0.9
4,486,092	+		GFF4494	0.22	-1.4
4,486,092	+		GFF4494	0.22	+0.5
4,486,100	-		GFF4494	0.23	+0.4
4,486,100	-		GFF4494	0.23	+0.1
4,486,100	-		GFF4494	0.23	-1.3
4,486,100	-		GFF4494	0.23	+0.5
4,486,132	+		GFF4494	0.24	-1.1
4,486,172	+		GFF4494	0.26	+0.3
4,486,188	+		GFF4494	0.26	-0.2
4,486,188	+		GFF4494	0.26	+0.5
4,486,188	+		GFF4494	0.26	-2.1
4,486,193	+		GFF4494	0.27	-0.1
4,486,193	+		GFF4494	0.27	+0.0
4,486,194	+		GFF4494	0.27	+0.2
4,486,196	-		GFF4494	0.27	+0.9
4,486,196	-		GFF4494	0.27	+1.0
4,486,196	-		GFF4494	0.27	-0.6
4,486,196	-		GFF4494	0.27	-1.3
4,486,196	-		GFF4494	0.27	+0.2
4,486,199	+		GFF4494	0.27	-0.7
4,486,207	-		GFF4494	0.27	+0.4
4,486,207	-		GFF4494	0.27	-1.1
4,486,212	+		GFF4494	0.27	-1.0
4,486,220	-		GFF4494	0.28	-0.0
4,486,220	-		GFF4494	0.28	-0.3
4,486,237	+		GFF4494	0.28	-0.7
4,486,259	+		GFF4494	0.29	-0.6
4,486,272	-		GFF4494	0.30	-1.8
4,486,300	+		GFF4494	0.31	-0.2
4,486,303	+		GFF4494	0.31	-0.0
4,486,303	-		GFF4494	0.31	-0.4
4,486,324	-		GFF4494	0.32	+0.0
4,486,350	-		GFF4494	0.33	+0.5
4,486,360	-		GFF4494	0.34	-1.0
4,486,362	-		GFF4494	0.34	+0.1
4,486,362	-		GFF4494	0.34	-0.6
4,486,362	-		GFF4494	0.34	-1.4
4,486,376	+		GFF4494	0.34	-0.5
4,486,376	+		GFF4494	0.34	+0.0
4,486,376	+		GFF4494	0.34	-0.3
4,486,376	+		GFF4494	0.34	-0.7
4,486,384	-		GFF4494	0.35	-1.0
4,486,384	-		GFF4494	0.35	+0.3
4,486,384	-		GFF4494	0.35	-0.6
4,486,384	-		GFF4494	0.35	+0.4
4,486,384	-		GFF4494	0.35	-0.6
4,486,384	-		GFF4494	0.35	-0.7
4,486,384	-		GFF4494	0.35	-0.8
4,486,384	-		GFF4494	0.35	-0.9
4,486,388	+		GFF4494	0.35	-1.2
4,486,388	+		GFF4494	0.35	-0.9
4,486,388	+		GFF4494	0.35	-1.2
4,486,396	-		GFF4494	0.35	-0.8
4,486,425	+		GFF4494	0.36	-1.1
4,486,441	-		GFF4494	0.37	-0.6
4,486,460	-		GFF4494	0.38	-2.4
4,486,466	+		GFF4494	0.38	+0.8
4,486,467	-		GFF4494	0.38	-0.6
4,486,471	+		GFF4494	0.38	-1.0
4,486,471	+		GFF4494	0.38	+0.8
4,486,471	+		GFF4494	0.38	-0.8
4,486,474	-		GFF4494	0.38	-1.0
4,486,479	-		GFF4494	0.39	-1.2
4,486,479	-		GFF4494	0.39	+0.3
4,486,556	+		GFF4494	0.42	-1.1
4,486,615	+		GFF4494	0.44	-0.5
4,486,618	+		GFF4494	0.44	-1.3
4,486,662	-		GFF4494	0.46	-1.0
4,486,665	-		GFF4494	0.46	-0.9
4,486,672	-		GFF4494	0.47	-0.5
4,486,674	+		GFF4494	0.47	-1.2
4,486,674	+		GFF4494	0.47	+1.1
4,486,674	+		GFF4494	0.47	-0.7
4,486,682	-		GFF4494	0.47	+0.9
4,486,682	-		GFF4494	0.47	-0.3
4,486,682	-		GFF4494	0.47	-1.0
4,486,699	-		GFF4494	0.48	-1.6
4,486,705	-		GFF4494	0.48	-1.6
4,486,708	+		GFF4494	0.48	-1.2
4,486,708	+		GFF4494	0.48	+0.8
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4,486,731	-		GFF4494	0.49	+0.9
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4,487,243	-		GFF4494	0.71	+1.0
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4,487,516	-		GFF4494	0.82	-1.0
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4,487,679	+		GFF4494	0.89	+0.1
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4,487,690	+		GFF4494	0.90	-1.1
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4,487,690	+		GFF4494	0.90	-0.5
4,487,690	+		GFF4494	0.90	+0.9
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4,487,698	-				-0.7
4,487,698	-				+1.0
4,487,698	-				-0.7
4,487,698	-				-0.1
4,487,698	-				-0.8
4,487,698	-				+0.7
4,487,705	+				-1.1
4,487,709	-				+0.1
4,487,710	-				+0.3
4,487,713	-				-0.2
4,487,736	-				+1.3
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4,487,758	+				-0.6
4,487,763	+				+0.2
4,487,783	+				-1.2
4,487,809	+				+0.8
4,487,814	+				-1.7
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4,487,814	+				-1.0
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4,487,814	+				+0.5
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4,487,817	-				+0.6
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4,487,822	-				+0.7
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4,487,827	-				-0.8
4,487,832	-				-1.0
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4,487,874	+				-2.0
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4,487,897	+				-0.2
4,487,897	+				+1.3
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