Strain Fitness in Sphingobium sp. HT1-2 around GFF3581

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,627,234	-		GFF3580	0.33	-1.4
3,627,253	-		GFF3580	0.36	+0.3
3,627,320	+		GFF3580	0.44	-2.1
3,627,321	-		GFF3580	0.44	-0.3
3,627,322	-		GFF3580	0.44	+0.8
3,627,338	-		GFF3580	0.46	-0.6
3,627,415	+		GFF3580	0.55	-0.7
3,627,416	-		GFF3580	0.55	+0.4
3,627,445	-		GFF3580	0.59	-0.3
3,627,455	-		GFF3580	0.60	-0.8
3,627,459	+		GFF3580	0.60	+0.4
3,627,481	-		GFF3580	0.63	-1.3
3,627,484	-		GFF3580	0.63	-1.4
3,627,484	-		GFF3580	0.63	+0.1
3,627,486	-		GFF3580	0.64	+0.3
3,627,509	+		GFF3580	0.66	-0.8
3,627,509	-		GFF3580	0.66	-0.3
3,627,534	-		GFF3580	0.69	-1.8
3,627,544	-		GFF3580	0.71	-2.1
3,627,546	+		GFF3580	0.71	+0.8
3,627,546	+		GFF3580	0.71	+0.4
3,627,553	-		GFF3580	0.72	+0.1
3,627,554	-		GFF3580	0.72	+0.2
3,627,564	-		GFF3580	0.73	-0.1
3,627,568	+		GFF3580	0.74	-0.7
3,627,571	-		GFF3580	0.74	+1.4
3,627,591	-		GFF3580	0.76	-1.1
3,627,592	-		GFF3580	0.76	-0.9
3,627,602	-		GFF3580	0.78	-0.6
3,627,605	+		GFF3580	0.78	+0.2
3,627,608	-		GFF3580	0.78	-0.8
3,627,608	-		GFF3580	0.78	-1.7
3,627,609	+		GFF3580	0.79	+1.8
3,627,609	+		GFF3580	0.79	-0.9
3,627,611	-		GFF3580	0.79	+0.6
3,627,623	-		GFF3580	0.80	+1.8
3,627,623	-		GFF3580	0.80	-0.7
3,627,623	-		GFF3580	0.80	-0.7
3,627,623	-		GFF3580	0.80	-0.3
3,627,624	-		GFF3580	0.80	-0.7
3,627,642	+		GFF3580	0.82	-0.6
3,627,644	+		GFF3580	0.83	+1.1
3,627,650	+		GFF3580	0.83	-0.3
3,627,650	+		GFF3580	0.83	-1.7
3,627,650	-		GFF3580	0.83	-0.7
3,627,650	-		GFF3580	0.83	-0.2
3,627,650	-		GFF3580	0.83	-0.1
3,627,650	-		GFF3580	0.83	+0.7
3,627,651	-		GFF3580	0.84	-0.7
3,627,658	-		GFF3580	0.84	+1.1
3,627,658	-		GFF3580	0.84	+0.6
3,627,658	-		GFF3580	0.84	-0.3
3,627,658	-		GFF3580	0.84	-2.7
3,627,658	-		GFF3580	0.84	+0.8
3,627,658	-		GFF3580	0.84	-0.1
3,627,661	-		GFF3580	0.85	-0.9
3,627,670	+		GFF3580	0.86	-1.0
3,627,683	+		GFF3580	0.87	-0.4
3,627,684	-		GFF3580	0.88	-1.9
3,627,686	-		GFF3580	0.88	-0.1
3,627,707	+				-0.4
3,627,709	+				-0.2
3,627,717	-				-0.2
3,627,751	-				+0.9
3,627,761	-				+0.8
3,627,761	-				-1.5
3,627,806	-				+1.8
3,627,817	+				-0.4
3,627,817	+				-0.3
3,627,820	-				-0.4
3,627,825	-				+1.3
3,627,825	-				-1.1
3,627,830	-				+0.6
3,627,831	-				-0.1
3,627,833	-				-0.4
3,627,854	+				+1.3
3,627,859	+				-1.1
3,627,939	-				-0.2
3,628,050	+				+1.3
3,628,069	+				+0.4
3,628,069	+				-1.4
3,628,075	-				-0.9
3,628,077	-				-0.3
3,628,077	-				-0.4
3,628,098	+				+0.7
3,628,100	+				+0.8
3,628,103	+				+1.1
3,628,103	+				+0.7
3,628,113	+				+1.1
3,628,113	+				-0.9
3,628,121	-				+1.0
3,628,136	+				-1.7
3,628,146	+				-1.1
3,628,151	+				-0.3
3,628,151	+				-1.4
3,628,156	+				-0.4
3,628,159	-				-0.4
3,628,164	-				+0.3
3,628,188	-				-0.8
3,628,188	-				-0.6
3,628,189	-				-0.8
3,628,195	+				-1.9
3,628,200	+				-0.0
3,628,208	-				-0.2
3,628,236	+				-0.9
3,628,243	+				-1.3
3,628,244	+				+0.6
3,628,250	+				-0.9
3,628,259	-				+0.7
3,628,259	-				-0.2
3,628,261	+				-0.9
3,628,261	+				-1.0
3,628,268	+				-0.6
3,628,270	+				+0.5
3,628,285	+				-0.3
3,628,287	-				-1.0
3,628,291	+				+0.4
3,628,291	+				-0.3
3,628,291	+				+1.2
3,628,291	+				-1.7
3,628,291	+				+0.3
3,628,293	-				-1.0
3,628,293	-				-1.4
3,628,301	+				-0.5
3,628,309	+				-1.1
3,628,309	+				-1.1
3,628,309	+				+0.4
3,628,309	+				-0.3
3,628,312	+				+0.7
3,628,317	-		GFF3581	0.10	+0.8
3,628,387	+		GFF3581	0.18	+0.2
3,628,387	+		GFF3581	0.18	-0.3
3,628,387	+		GFF3581	0.18	-0.9
3,628,387	+		GFF3581	0.18	+0.0
3,628,387	+		GFF3581	0.18	-1.4
3,628,387	+		GFF3581	0.18	-1.5
3,628,387	+		GFF3581	0.18	+0.4
3,628,387	+		GFF3581	0.18	-1.1
3,628,387	+		GFF3581	0.18	-1.0
3,628,387	+		GFF3581	0.18	-0.3
3,628,387	+		GFF3581	0.18	-1.0
3,628,387	+		GFF3581	0.18	-0.7
3,628,395	-		GFF3581	0.19	-0.3
3,628,395	-		GFF3581	0.19	-2.7
3,628,397	+		GFF3581	0.19	-1.0
3,628,397	+		GFF3581	0.19	+0.4
3,628,405	-		GFF3581	0.20	-1.7
3,628,428	-		GFF3581	0.23	-0.3
3,628,451	-		GFF3581	0.25	-0.4
3,628,491	+		GFF3581	0.30	-0.1
3,628,501	+		GFF3581	0.31	-0.0
3,628,503	+		GFF3581	0.31	-0.8
3,628,509	+		GFF3581	0.32	+0.7
3,628,517	+		GFF3581	0.33	+0.8
3,628,537	+		GFF3581	0.35	+0.8
3,628,537	+		GFF3581	0.35	-0.4
3,628,537	+		GFF3581	0.35	-0.4
3,628,537	+		GFF3581	0.35	+0.7
3,628,537	+		GFF3581	0.35	-0.6
3,628,542	+		GFF3581	0.36	-2.0
3,628,545	-		GFF3581	0.36	+0.4
3,628,545	-		GFF3581	0.36	+1.2
3,628,547	+		GFF3581	0.36	-1.3
3,628,552	+		GFF3581	0.37	+0.0
3,628,552	+		GFF3581	0.37	-0.6
3,628,560	-		GFF3581	0.38	-0.4
3,628,571	+		GFF3581	0.39	-1.6
3,628,574	+		GFF3581	0.40	+0.0
3,628,574	+		GFF3581	0.40	+0.2
3,628,574	+		GFF3581	0.40	-0.3
3,628,582	-		GFF3581	0.40	+0.7
3,628,584	+		GFF3581	0.41	+0.0
3,628,604	+		GFF3581	0.43	+0.1
3,628,609	+		GFF3581	0.44	+1.4
3,628,612	-		GFF3581	0.44	+0.3
3,628,614	+		GFF3581	0.44	+0.1
3,628,614	+		GFF3581	0.44	+0.4
3,628,626	+		GFF3581	0.46	+0.2
3,628,626	+		GFF3581	0.46	+0.5
3,628,634	+		GFF3581	0.46	-1.6
3,628,634	-		GFF3581	0.46	-0.9
3,628,639	+		GFF3581	0.47	-0.8
3,628,639	+		GFF3581	0.47	+0.4
3,628,639	+		GFF3581	0.47	+0.1
3,628,639	+		GFF3581	0.47	+0.4
3,628,639	+		GFF3581	0.47	+1.4
3,628,639	+		GFF3581	0.47	+0.4
3,628,639	+		GFF3581	0.47	-0.7
3,628,642	-		GFF3581	0.47	+0.7
3,628,646	+		GFF3581	0.48	+0.2
3,628,646	+		GFF3581	0.48	-0.2
3,628,647	-		GFF3581	0.48	-1.3
3,628,659	+		GFF3581	0.49	-1.0
3,628,659	+		GFF3581	0.49	+0.7
3,628,659	+		GFF3581	0.49	-1.3
3,628,659	+		GFF3581	0.49	-0.4
3,628,659	+		GFF3581	0.49	+0.9
3,628,659	+		GFF3581	0.49	+0.4
3,628,659	+		GFF3581	0.49	-1.7
3,628,659	+		GFF3581	0.49	+0.3
3,628,659	+		GFF3581	0.49	-0.8
3,628,659	+		GFF3581	0.49	-0.4
3,628,659	+		GFF3581	0.49	-0.8
3,628,667	-		GFF3581	0.50	-1.1
3,628,667	-		GFF3581	0.50	-0.9
3,628,667	-		GFF3581	0.50	+2.1
3,628,671	+		GFF3581	0.51	-1.5
3,628,682	+		GFF3581	0.52	+0.3
3,628,684	+		GFF3581	0.52	+0.7
3,628,692	-		GFF3581	0.53	+0.7
3,628,693	+		GFF3581	0.53	+0.2
3,628,693	+		GFF3581	0.53	+0.3
3,628,693	+		GFF3581	0.53	-0.9
3,628,693	+		GFF3581	0.53	+1.3
3,628,693	+		GFF3581	0.53	-0.9
3,628,693	+		GFF3581	0.53	+0.7
3,628,693	+		GFF3581	0.53	+1.7
3,628,701	-		GFF3581	0.54	+0.0
3,628,703	+		GFF3581	0.54	+0.7
3,628,729	+		GFF3581	0.57	-1.1
3,628,739	+		GFF3581	0.59	-0.1
3,628,739	+		GFF3581	0.59	-0.7
3,628,810	+		GFF3581	0.67	-0.3
3,628,810	+		GFF3581	0.67	-1.9
3,628,810	+		GFF3581	0.67	-0.3
3,628,810	+		GFF3581	0.67	-0.3
3,628,810	+		GFF3581	0.67	-1.0
3,628,810	+		GFF3581	0.67	-0.5
3,628,810	+		GFF3581	0.67	+1.8
3,628,810	+		GFF3581	0.67	-0.2
3,628,810	+		GFF3581	0.67	+0.8
3,628,810	+		GFF3581	0.67	-2.1
3,628,810	+		GFF3581	0.67	-1.3
3,628,810	+		GFF3581	0.67	+1.6
3,628,811	+		GFF3581	0.67	-0.6
3,628,815	+		GFF3581	0.67	-0.7
3,628,815	+		GFF3581	0.67	-0.7
3,628,818	-		GFF3581	0.68	-0.8
3,628,818	-		GFF3581	0.68	-2.0
3,628,818	-		GFF3581	0.68	-0.6
3,628,818	-		GFF3581	0.68	+0.8
3,628,818	-		GFF3581	0.68	-0.7
3,628,818	-		GFF3581	0.68	+0.8
3,628,818	-		GFF3581	0.68	+0.2
3,628,829	+		GFF3581	0.69	+1.2
3,628,829	+		GFF3581	0.69	+1.8
3,628,829	+		GFF3581	0.69	-0.5
3,628,829	+		GFF3581	0.69	+0.7
3,628,829	+		GFF3581	0.69	+0.3
3,628,829	+		GFF3581	0.69	-0.0
3,628,829	+		GFF3581	0.69	+0.1
3,628,829	+		GFF3581	0.69	+0.4
3,628,829	+		GFF3581	0.69	-0.6
3,628,837	-		GFF3581	0.70	-1.3
3,628,837	-		GFF3581	0.70	-0.3
3,628,837	-		GFF3581	0.70	-0.2
3,628,837	-		GFF3581	0.70	-1.1
3,628,837	-		GFF3581	0.70	-0.7
3,628,837	-		GFF3581	0.70	-0.8
3,628,851	+		GFF3581	0.71	-1.4
3,628,851	+		GFF3581	0.71	-1.1
3,628,851	+		GFF3581	0.71	-0.5
3,628,866	+		GFF3581	0.73	-1.3
3,628,871	+		GFF3581	0.74	+0.8
3,628,872	-		GFF3581	0.74	-1.3
3,628,906	+		GFF3581	0.78	+0.0
3,628,907	+		GFF3581	0.78	-1.0
3,628,914	-		GFF3581	0.79	-1.8
3,628,921	+		GFF3581	0.79	-1.1
3,628,921	+		GFF3581	0.79	+0.7
3,628,921	+		GFF3581	0.79	-0.8
3,628,926	+		GFF3581	0.80	+0.8
3,628,929	-		GFF3581	0.80	-0.6
3,628,929	-		GFF3581	0.80	+0.6
3,628,930	+		GFF3581	0.80	+1.0
3,628,933	-		GFF3581	0.81	-0.4
3,628,947	+		GFF3581	0.82	+0.2
3,628,950	-		GFF3581	0.83	-1.1
3,628,955	-		GFF3581	0.83	+0.8
3,628,964	+		GFF3581	0.84	+1.0
3,628,965	+		GFF3581	0.84	+1.0
3,628,965	+		GFF3581	0.84	+0.4
3,628,965	+		GFF3581	0.84	-0.7
3,628,967	-		GFF3581	0.85	+0.3
3,628,969	+		GFF3581	0.85	+0.8
3,628,969	+		GFF3581	0.85	+0.3
3,628,969	+		GFF3581	0.85	+1.3
3,628,971	+		GFF3581	0.85	+0.9
3,628,974	+		GFF3581	0.86	+0.4
3,628,977	-		GFF3581	0.86	+0.3
3,628,979	+		GFF3581	0.86	-2.0
3,628,984	+		GFF3581	0.87	-0.7
3,628,987	-		GFF3581	0.87	-0.3
3,628,998	-		GFF3581	0.88	-1.3
3,628,998	-		GFF3581	0.88	-0.3
3,629,006	-		GFF3581	0.89	+1.1
3,629,009	-		GFF3581	0.90	-0.7
3,629,015	+				-0.9
3,629,017	+				-1.5
3,629,017	+				-1.7
3,629,018	-				-0.3
3,629,020	+				-1.4
3,629,023	-				-0.4
3,629,025	-				-0.0
3,629,032	-				-0.6
3,629,032	-				-0.4
3,629,032	-				-1.1
3,629,049	+				+1.3
3,629,051	+				-1.3
3,629,057	+				-0.9
3,629,065	-				-1.5
3,629,065	-				+0.8
3,629,069	+				+0.6
3,629,079	+				-0.7
3,629,084	+				+0.4
3,629,084	+				-0.1
3,629,087	-				-0.9
3,629,094	+				+0.4
3,629,094	+				-0.4
3,629,094	+				-1.2
3,629,094	+				-0.1
3,629,094	+				+0.0
3,629,094	+				+0.7
3,629,094	+				-0.6
3,629,094	+				-0.5
3,629,094	+				-2.0
3,629,094	+				+0.9
3,629,102	+				-1.7
3,629,102	+				-0.3
3,629,102	-				-0.2
3,629,104	+				+0.3
3,629,107	+				+0.3
3,629,112	+				-0.9
3,629,112	+				-1.2
3,629,112	+				+0.2
3,629,112	+				+0.4
3,629,112	+				+0.6
3,629,120	-				-0.6
3,629,120	-				-0.6
3,629,120	-				-0.9
3,629,122	+				+0.9
3,629,150	+				-0.2
3,629,152	+				-1.3
3,629,163	-				+0.0
3,629,182	+				+0.7
3,629,203	-				-0.2
3,629,211	+		GFF3582	0.10	-1.0
3,629,216	+		GFF3582	0.11	+0.4
3,629,216	+		GFF3582	0.11	-0.2
3,629,216	+		GFF3582	0.11	-0.8
3,629,216	+		GFF3582	0.11	+1.3
3,629,224	-		GFF3582	0.12	-0.6
3,629,235	+		GFF3582	0.14	+0.4
3,629,249	+		GFF3582	0.16	-0.9
3,629,249	+		GFF3582	0.16	-0.3
3,629,257	-		GFF3582	0.18	-0.4
3,629,285	+		GFF3582	0.22	-1.2
3,629,285	+		GFF3582	0.22	-0.6
3,629,309	-		GFF3582	0.26	-0.2
3,629,319	+		GFF3582	0.28	-1.6
3,629,357	-		GFF3582	0.35	+1.7
3,629,375	+		GFF3582	0.38	+0.5
3,629,385	+		GFF3582	0.39	-1.0
3,629,393	-		GFF3582	0.41	-1.7
3,629,419	+		GFF3582	0.45	-1.4
3,629,427	-		GFF3582	0.46	+0.0
3,629,438	+		GFF3582	0.48	+0.6
3,629,438	+		GFF3582	0.48	+1.2
3,629,438	+		GFF3582	0.48	+0.6
3,629,446	-		GFF3582	0.49	-0.1
3,629,477	+		GFF3582	0.55	-0.7
3,629,488	+		GFF3582	0.56	+0.1
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