Strain Fitness in Sphingobium sp. HT1-2 around GFF5223

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,214,225	-				-0.9
5,214,236	+		GFF5221	0.11	-0.0
5,214,290	+		GFF5221	0.33	+0.8
5,214,290	+		GFF5221	0.33	+0.1
5,214,290	+		GFF5221	0.33	-2.2
5,214,290	+		GFF5221	0.33	-0.3
5,214,290	+		GFF5221	0.33	-1.4
5,214,290	+		GFF5221	0.33	+0.7
5,214,290	+		GFF5221	0.33	+0.5
5,214,290	+		GFF5221	0.33	+0.7
5,214,290	+		GFF5221	0.33	-0.4
5,214,290	+		GFF5221	0.33	-0.1
5,214,290	+		GFF5221	0.33	+0.4
5,214,290	+		GFF5221	0.33	+0.7
5,214,290	+		GFF5221	0.33	+0.9
5,214,298	-		GFF5221	0.36	+0.7
5,214,298	-		GFF5221	0.36	+0.3
5,214,298	-		GFF5221	0.36	-1.6
5,214,298	-		GFF5221	0.36	-0.1
5,214,298	-		GFF5221	0.36	-1.9
5,214,298	-		GFF5221	0.36	-2.3
5,214,298	-		GFF5221	0.36	-1.1
5,214,298	-		GFF5221	0.36	-2.0
5,214,298	-		GFF5221	0.36	-0.3
5,214,298	-		GFF5221	0.36	-1.4
5,214,298	-		GFF5221	0.36	+0.1
5,214,298	-		GFF5221	0.36	+1.1
5,214,298	-		GFF5221	0.36	-0.2
5,214,298	-		GFF5221	0.36	-0.1
5,214,298	-		GFF5221	0.36	+0.9
5,214,298	-		GFF5221	0.36	-0.0
5,214,341	+		GFF5221	0.54	-0.3
5,214,341	+		GFF5221	0.54	+0.2
5,214,365	+		GFF5221	0.64	-0.9
5,214,373	-		GFF5221	0.67	-0.7
5,214,401	+		GFF5221	0.79	+1.1
5,214,409	-		GFF5221	0.82	+0.7
5,214,431	-				+1.0
5,214,433	+				+0.9
5,214,436	-				+0.4
5,214,498	-				-0.4
5,214,504	-				-0.3
5,214,506	+				+0.4
5,214,506	-				+0.2
5,214,516	+				-0.4
5,214,574	+		GFF5222	0.16	+0.8
5,214,582	-		GFF5222	0.17	-0.7
5,214,585	+		GFF5222	0.17	+0.9
5,214,591	-		GFF5222	0.18	-0.0
5,214,602	+		GFF5222	0.20	-0.9
5,214,619	-		GFF5222	0.22	-0.7
5,214,690	+		GFF5222	0.31	-0.0
5,214,698	-		GFF5222	0.33	-1.2
5,214,698	-		GFF5222	0.33	-1.5
5,214,715	+		GFF5222	0.35	-0.9
5,214,723	-		GFF5222	0.36	-2.2
5,214,735	+		GFF5222	0.37	-1.3
5,214,735	+		GFF5222	0.37	-1.8
5,214,735	+		GFF5222	0.37	-0.0
5,214,735	+		GFF5222	0.37	-0.4
5,214,735	+		GFF5222	0.37	-0.7
5,214,735	+		GFF5222	0.37	-2.0
5,214,735	+		GFF5222	0.37	-1.1
5,214,735	+		GFF5222	0.37	-0.4
5,214,735	+		GFF5222	0.37	-0.4
5,214,735	+		GFF5222	0.37	-1.2
5,214,735	+		GFF5222	0.37	+0.9
5,214,735	+		GFF5222	0.37	-0.8
5,214,740	+		GFF5222	0.38	-1.1
5,214,740	+		GFF5222	0.38	-0.7
5,214,743	-		GFF5222	0.39	+0.3
5,214,743	-		GFF5222	0.39	-0.6
5,214,743	-		GFF5222	0.39	-1.0
5,214,743	-		GFF5222	0.39	+0.4
5,214,743	-		GFF5222	0.39	-0.2
5,214,743	-		GFF5222	0.39	-1.7
5,214,763	+		GFF5222	0.41	+1.5
5,214,771	-		GFF5222	0.42	-0.2
5,214,816	-		GFF5222	0.48	-0.4
5,214,870	+		GFF5222	0.55	-0.6
5,214,870	+		GFF5222	0.55	-0.5
5,214,878	-		GFF5222	0.57	+0.6
5,214,878	-		GFF5222	0.57	-1.4
5,214,889	+		GFF5222	0.58	-0.9
5,214,889	+		GFF5222	0.58	-0.7
5,214,889	+		GFF5222	0.58	+0.3
5,214,889	+		GFF5222	0.58	-1.1
5,214,889	+		GFF5222	0.58	+0.1
5,214,894	+		GFF5222	0.59	-1.0
5,214,897	-		GFF5222	0.59	-1.0
5,214,897	-		GFF5222	0.59	+0.0
5,214,897	-		GFF5222	0.59	-0.2
5,214,897	-		GFF5222	0.59	+1.2
5,214,897	-		GFF5222	0.59	-1.0
5,214,897	-		GFF5222	0.59	-0.1
5,214,902	-		GFF5222	0.60	+1.0
5,214,902	-		GFF5222	0.60	-0.9
5,214,916	-		GFF5222	0.62	+0.8
5,214,977	+		GFF5222	0.70	-2.3
5,215,022	-		GFF5222	0.76	-1.0
5,215,022	-		GFF5222	0.76	-1.2
5,215,022	-		GFF5222	0.76	-0.8
5,215,028	-		GFF5222	0.77	+0.7
5,215,044	-		GFF5222	0.79	-0.9
5,215,060	+		GFF5222	0.81	-0.4
5,215,060	+		GFF5222	0.81	-0.7
5,215,060	+		GFF5222	0.81	-1.1
5,215,068	-		GFF5222	0.82	+0.1
5,215,079	+		GFF5222	0.83	-0.7
5,215,087	-		GFF5222	0.84	-1.4
5,215,087	-		GFF5222	0.84	-0.6
5,215,087	-		GFF5222	0.84	-0.4
5,215,087	-		GFF5222	0.84	-0.4
5,215,087	-		GFF5222	0.84	+1.4
5,215,087	-		GFF5222	0.84	-0.5
5,215,092	-		GFF5222	0.85	+0.7
5,215,097	+		GFF5222	0.86	+0.6
5,215,112	-		GFF5222	0.88	+0.6
5,215,114	+		GFF5222	0.88	-0.2
5,215,122	-		GFF5222	0.89	-1.3
5,215,136	-				-0.3
5,215,177	-				+0.5
5,215,199	+				+0.6
5,215,199	+				-0.0
5,215,199	+				+1.3
5,215,199	+				+0.7
5,215,199	+				+0.9
5,215,199	+				-0.7
5,215,200	-				-1.0
5,215,205	-				+0.5
5,215,207	-				-1.4
5,215,207	-				-0.4
5,215,207	-				-1.2
5,215,209	+				+0.3
5,215,215	+				-0.1
5,215,217	-				-1.7
5,215,217	-				-0.2
5,215,219	+				-0.9
5,215,219	+				-1.0
5,215,219	+				+1.3
5,215,220	+				-1.6
5,215,220	+				+0.1
5,215,220	+				-1.0
5,215,220	+				+0.5
5,215,220	+				+0.1
5,215,225	+				+0.3
5,215,225	+				-0.6
5,215,227	-				+0.0
5,215,228	-				-0.9
5,215,233	-				-0.4
5,215,240	+				+0.1
5,215,248	-				+1.1
5,215,275	+				+0.6
5,215,283	-				-1.9
5,215,301	+				-1.8
5,215,307	+				-1.0
5,215,307	+				+0.5
5,215,308	+				-0.0
5,215,315	-				-0.1
5,215,316	-				-1.5
5,215,342	+		GFF5223	0.10	-0.8
5,215,342	+		GFF5223	0.10	-0.8
5,215,342	+		GFF5223	0.10	+0.9
5,215,342	+		GFF5223	0.10	+1.8
5,215,350	-		GFF5223	0.11	-0.1
5,215,363	+		GFF5223	0.12	-1.4
5,215,363	+		GFF5223	0.12	+0.1
5,215,395	+		GFF5223	0.14	-0.3
5,215,396	+		GFF5223	0.14	-0.3
5,215,401	+		GFF5223	0.14	+0.9
5,215,429	+		GFF5223	0.16	+0.7
5,215,429	+		GFF5223	0.16	+1.6
5,215,429	+		GFF5223	0.16	-0.9
5,215,429	+		GFF5223	0.16	+0.4
5,215,430	-		GFF5223	0.16	-0.9
5,215,434	+		GFF5223	0.16	+1.1
5,215,434	+		GFF5223	0.16	-0.8
5,215,437	-		GFF5223	0.16	+1.6
5,215,437	-		GFF5223	0.16	-0.4
5,215,437	-		GFF5223	0.16	-0.1
5,215,444	+		GFF5223	0.17	-1.0
5,215,446	+		GFF5223	0.17	-0.7
5,215,466	+		GFF5223	0.18	-1.7
5,215,469	-		GFF5223	0.19	-1.4
5,215,473	-		GFF5223	0.19	-1.3
5,215,484	+		GFF5223	0.20	-1.3
5,215,508	-		GFF5223	0.21	+1.2
5,215,541	+		GFF5223	0.23	+0.3
5,215,541	+		GFF5223	0.23	+1.0
5,215,546	+		GFF5223	0.24	+0.1
5,215,554	-		GFF5223	0.24	+0.7
5,215,561	+		GFF5223	0.25	-0.9
5,215,568	+		GFF5223	0.25	-1.4
5,215,569	-		GFF5223	0.25	-1.0
5,215,569	-		GFF5223	0.25	-0.9
5,215,622	+		GFF5223	0.29	+0.6
5,215,622	+		GFF5223	0.29	-0.3
5,215,622	+		GFF5223	0.29	-1.2
5,215,627	+		GFF5223	0.29	-0.8
5,215,663	+		GFF5223	0.31	+0.8
5,215,665	+		GFF5223	0.31	-2.0
5,215,665	+		GFF5223	0.31	+0.6
5,215,665	+		GFF5223	0.31	+0.5
5,215,665	+		GFF5223	0.31	+0.6
5,215,665	+		GFF5223	0.31	-1.5
5,215,665	+		GFF5223	0.31	-0.7
5,215,673	-		GFF5223	0.32	-1.0
5,215,673	-		GFF5223	0.32	-0.2
5,215,673	-		GFF5223	0.32	+0.4
5,215,673	-		GFF5223	0.32	+0.7
5,215,673	-		GFF5223	0.32	+1.3
5,215,673	-		GFF5223	0.32	-0.8
5,215,683	-		GFF5223	0.33	-0.2
5,215,754	+		GFF5223	0.37	+0.0
5,215,840	+		GFF5223	0.43	+0.4
5,215,853	-		GFF5223	0.44	+1.1
5,215,896	-		GFF5223	0.47	+0.3
5,215,896	-		GFF5223	0.47	-0.1
5,215,940	+		GFF5223	0.50	-0.7
5,215,947	+		GFF5223	0.50	+0.7
5,215,948	-		GFF5223	0.50	-1.6
5,215,965	-		GFF5223	0.51	-0.5
5,215,981	+		GFF5223	0.52	+0.4
5,215,986	+		GFF5223	0.53	+1.2
5,216,022	-		GFF5223	0.55	-0.2
5,216,037	+		GFF5223	0.56	+0.6
5,216,055	+		GFF5223	0.57	+0.8
5,216,075	-		GFF5223	0.58	+0.4
5,216,075	-		GFF5223	0.58	-0.9
5,216,077	+		GFF5223	0.59	+0.3
5,216,090	-		GFF5223	0.59	-0.7
5,216,113	-		GFF5223	0.61	+0.1
5,216,130	-		GFF5223	0.62	-0.6
5,216,137	-		GFF5223	0.62	-0.6
5,216,146	+		GFF5223	0.63	-0.7
5,216,156	+		GFF5223	0.64	-0.4
5,216,169	+		GFF5223	0.65	+0.1
5,216,174	+		GFF5223	0.65	-2.4
5,216,177	-		GFF5223	0.65	-0.9
5,216,177	-		GFF5223	0.65	-1.6
5,216,177	-		GFF5223	0.65	-1.0
5,216,182	-		GFF5223	0.65	+0.6
5,216,182	-		GFF5223	0.65	-0.4
5,216,204	+		GFF5223	0.67	-1.1
5,216,215	-		GFF5223	0.68	-1.6
5,216,220	+		GFF5223	0.68	-0.6
5,216,238	-		GFF5223	0.69	-1.8
5,216,242	+		GFF5223	0.69	+0.7
5,216,253	+		GFF5223	0.70	+0.7
5,216,280	-		GFF5223	0.72	+0.4
5,216,329	-		GFF5223	0.75	+1.1
5,216,340	+		GFF5223	0.76	-0.9
5,216,342	-		GFF5223	0.76	-1.0
5,216,348	-		GFF5223	0.76	+0.7
5,216,368	-		GFF5223	0.78	-0.9
5,216,374	-		GFF5223	0.78	+0.6
5,216,413	+		GFF5223	0.81	+0.1
5,216,422	+		GFF5223	0.81	-0.9
5,216,422	+		GFF5223	0.81	-0.2
5,216,430	-		GFF5223	0.82	-0.0
5,216,430	-		GFF5223	0.82	-0.5
5,216,430	-		GFF5223	0.82	+0.1
5,216,463	+		GFF5223	0.84	-1.2
5,216,466	-		GFF5223	0.84	-0.7
5,216,471	-		GFF5223	0.84	+0.7
5,216,474	-		GFF5223	0.85	-0.7
5,216,474	-		GFF5223	0.85	+0.7
5,216,484	+		GFF5223	0.85	+1.5
5,216,492	-		GFF5223	0.86	-0.4
5,216,508	+		GFF5223	0.87	-1.1
5,216,513	+		GFF5223	0.87	+0.7
5,216,513	+		GFF5223	0.87	+0.3
5,216,513	+		GFF5223	0.87	+0.1
5,216,513	+		GFF5223	0.87	-0.4
5,216,513	+		GFF5223	0.87	+0.1
5,216,516	-		GFF5223	0.87	-0.7
5,216,516	-		GFF5223	0.87	-1.5
5,216,521	-		GFF5223	0.88	-1.4
5,216,534	+		GFF5223	0.89	-2.5
5,216,536	+		GFF5223	0.89	-1.2
5,216,554	-		GFF5223	0.90	-1.5
5,216,556	+				+0.1
5,216,556	+				-0.9
5,216,561	+				+0.7
5,216,616	+				+0.5
5,216,616	-				-2.2
5,216,621	+				+0.8
5,216,621	+				+0.1
5,216,621	+				+0.1
5,216,624	-				-1.2
5,216,624	-				-0.4
5,216,624	-				+0.3
5,216,626	+				+1.2
5,216,626	+				+0.4
5,216,626	+				-0.1
5,216,626	+				-0.2
5,216,626	+				+0.1
5,216,626	+				-0.4
5,216,629	-				+0.9
5,216,634	-				+0.2
5,216,634	-				+0.0
5,216,634	-				+1.8
5,216,634	-				-0.1
5,216,634	-				+0.6
5,216,644	-				-1.8
5,216,651	-				-1.3
5,216,659	-				-0.3
5,216,702	-				-0.3
5,216,736	+				-0.2
5,216,744	-				+0.3
5,216,757	-				+1.0
5,216,766	+				-1.4
5,216,766	+				-0.2
5,216,766	+				-2.1
5,216,766	+				+0.3
5,216,766	+				+0.0
5,216,766	+				-0.2
5,216,766	+				-0.0
5,216,766	+				-0.9
5,216,767	+				-0.9
5,216,767	-				+1.5
5,216,767	-				-0.2
5,216,767	-				-0.4
5,216,774	-				-0.0
5,216,774	-				+0.8
5,216,774	-				-1.6
5,216,774	-				-0.7
5,216,774	-				+0.8
5,216,774	-				-0.5
5,216,774	-				-1.3
5,216,774	-				+0.0
5,216,774	-				-0.4
5,216,774	-				-0.1
5,216,774	-				+0.8
5,216,784	-				-0.5
5,216,789	-		GFF5224	0.10	+0.1
5,216,789	-		GFF5224	0.10	-0.7
5,216,789	-		GFF5224	0.10	-1.4
5,216,794	-		GFF5224	0.11	-0.1
5,216,798	+		GFF5224	0.11	+0.1
5,216,803	+		GFF5224	0.12	+0.1
5,216,803	+		GFF5224	0.12	-0.3
5,216,811	-		GFF5224	0.13	+1.9
5,216,816	+		GFF5224	0.13	-0.5
5,216,828	-		GFF5224	0.15	-0.9
5,216,837	+		GFF5224	0.16	-1.4
5,216,838	-		GFF5224	0.16	-1.3
5,216,845	-		GFF5224	0.17	-1.7
5,216,866	+		GFF5224	0.19	-1.6
5,216,868	-		GFF5224	0.19	+0.1
5,216,881	-		GFF5224	0.21	-1.0
5,216,936	+		GFF5224	0.27	-2.0
5,216,936	+		GFF5224	0.27	-0.7
5,216,936	+		GFF5224	0.27	-0.7
5,216,936	+		GFF5224	0.27	-1.0
5,216,936	+		GFF5224	0.27	-1.0
5,216,936	+		GFF5224	0.27	-0.6
5,216,936	+		GFF5224	0.27	+0.7
5,216,936	+		GFF5224	0.27	+0.4
5,216,936	+		GFF5224	0.27	+0.1
5,216,936	+		GFF5224	0.27	-1.4
5,216,936	+		GFF5224	0.27	+0.4
5,216,936	+		GFF5224	0.27	-1.3
5,216,936	+		GFF5224	0.27	+0.8
5,216,936	+		GFF5224	0.27	-0.1
5,216,936	+		GFF5224	0.27	+0.5
5,216,936	+		GFF5224	0.27	+0.6
5,216,936	+		GFF5224	0.27	-2.0
5,216,941	+		GFF5224	0.28	-0.6
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5,217,471	-				-1.9
5,217,488	+				+0.9
5,217,490	-				+0.9
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5,217,635	+				-0.9
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5,217,643	-				+0.6
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5,217,680	+				-1.0
5,217,688	-				+0.1
5,217,694	-				-0.9
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