Strain Fitness in Sphingobium sp. HT1-2 around GFF2369

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,390,480	+				-1.0
2,390,480	+				-1.1
2,390,483	-				-0.0
2,390,488	-				+0.5
2,390,490	+				+0.3
2,390,494	-				-0.2
2,390,498	-				+0.3
2,390,498	-				-1.4
2,390,498	-				+1.9
2,390,505	+				+0.1
2,390,513	-				-0.6
2,390,529	-				+0.4
2,390,538	-				+1.1
2,391,254	+				-0.3
2,391,254	+				-0.3
2,391,261	-				-0.5
2,391,307	-				-2.0
2,391,313	-				-0.9
2,391,338	-				-0.4
2,391,388	+				-0.3
2,391,389	+				-0.6
2,391,396	-				+0.7
2,391,396	-				-0.1
2,391,416	+				+0.3
2,391,440	-				-2.8
2,391,460	+				+1.0
2,391,466	-				+0.6
2,391,467	+				+0.5
2,391,468	+				+1.1
2,391,468	-				-1.8
2,391,482	+				-2.0
2,391,482	+				-1.5
2,391,482	+				-0.9
2,391,490	-				+0.7
2,391,551	+				-1.5
2,391,576	+				-1.6
2,391,576	+				+0.3
2,391,576	+				+1.4
2,391,584	-				-1.2
2,391,586	+				-0.7
2,391,586	+				-0.3
2,391,594	-				-0.9
2,391,594	-				-0.6
2,391,594	-				-1.3
2,391,594	-				-2.7
2,391,594	-				-1.9
2,391,611	-				+0.5
2,391,615	+				+0.5
2,391,623	+				-2.3
2,391,623	+				-1.3
2,391,623	+				-0.4
2,391,623	+				-0.3
2,391,623	+				-0.3
2,391,631	-				-0.5
2,391,631	-				-0.6
2,391,631	-				-1.5
2,391,631	-				-2.7
2,391,641	-				-1.0
2,391,651	+				+1.2
2,391,651	+				-0.7
2,391,654	-				-0.3
2,391,726	+		GFF2369	0.13	-0.7
2,391,726	+		GFF2369	0.13	-0.3
2,391,734	-		GFF2369	0.14	+0.4
2,391,734	-		GFF2369	0.14	-0.3
2,391,742	+		GFF2369	0.14	-1.4
2,391,750	-		GFF2369	0.15	-0.7
2,391,753	+		GFF2369	0.15	-1.0
2,391,778	-		GFF2369	0.16	-0.6
2,391,778	-		GFF2369	0.16	-0.7
2,391,789	+		GFF2369	0.17	+1.9
2,391,821	+		GFF2369	0.18	-2.4
2,391,840	+		GFF2369	0.19	+0.5
2,391,848	-		GFF2369	0.20	+1.0
2,391,856	-		GFF2369	0.20	-0.9
2,391,895	+		GFF2369	0.22	+0.0
2,391,895	+		GFF2369	0.22	+0.7
2,391,903	-		GFF2369	0.23	-0.9
2,391,903	-		GFF2369	0.23	-1.0
2,391,903	-		GFF2369	0.23	-0.8
2,391,924	-		GFF2369	0.24	-0.7
2,391,967	+		GFF2369	0.26	-0.6
2,391,983	+		GFF2369	0.27	-0.7
2,391,983	+		GFF2369	0.27	-0.5
2,391,983	+		GFF2369	0.27	-0.9
2,392,005	-		GFF2369	0.28	-0.5
2,392,007	+		GFF2369	0.28	-0.7
2,392,012	+		GFF2369	0.28	+0.4
2,392,012	+		GFF2369	0.28	-0.8
2,392,012	+		GFF2369	0.28	-0.7
2,392,017	+		GFF2369	0.28	-1.3
2,392,017	+		GFF2369	0.28	+0.0
2,392,017	+		GFF2369	0.28	+0.5
2,392,020	-		GFF2369	0.29	-1.5
2,392,025	-		GFF2369	0.29	-1.1
2,392,045	+		GFF2369	0.30	-0.5
2,392,053	-		GFF2369	0.30	-0.3
2,392,058	-		GFF2369	0.31	+0.3
2,392,104	-		GFF2369	0.33	-1.5
2,392,139	-		GFF2369	0.35	-0.3
2,392,143	+		GFF2369	0.35	+0.0
2,392,151	-		GFF2369	0.35	+0.8
2,392,151	-		GFF2369	0.35	-0.3
2,392,152	-		GFF2369	0.35	-0.7
2,392,154	+		GFF2369	0.35	+1.3
2,392,154	+		GFF2369	0.35	-1.8
2,392,154	+		GFF2369	0.35	-1.2
2,392,156	-		GFF2369	0.36	-0.8
2,392,162	-		GFF2369	0.36	-1.5
2,392,162	-		GFF2369	0.36	-2.0
2,392,162	-		GFF2369	0.36	-1.3
2,392,181	-		GFF2369	0.37	+1.0
2,392,183	-		GFF2369	0.37	-0.5
2,392,213	+		GFF2369	0.38	-0.6
2,392,244	+		GFF2369	0.40	-1.4
2,392,244	+		GFF2369	0.40	-0.0
2,392,262	-		GFF2369	0.41	-0.3
2,392,289	+		GFF2369	0.42	-1.5
2,392,294	+		GFF2369	0.43	+0.5
2,392,342	-		GFF2369	0.45	-1.0
2,392,344	+		GFF2369	0.45	-1.1
2,392,344	+		GFF2369	0.45	+0.7
2,392,352	-		GFF2369	0.46	-0.3
2,392,352	-		GFF2369	0.46	-1.5
2,392,352	-		GFF2369	0.46	+0.1
2,392,352	-		GFF2369	0.46	-0.3
2,392,352	-		GFF2369	0.46	-0.6
2,392,380	+		GFF2369	0.47	-0.6
2,392,388	-		GFF2369	0.47	+1.1
2,392,388	-		GFF2369	0.47	+1.4
2,392,388	-		GFF2369	0.47	-0.7
2,392,388	-		GFF2369	0.47	-1.0
2,392,388	-		GFF2369	0.47	-0.1
2,392,390	-		GFF2369	0.48	-0.7
2,392,390	-		GFF2369	0.48	-0.8
2,392,390	-		GFF2369	0.48	-0.5
2,392,401	+		GFF2369	0.48	-1.6
2,392,414	-		GFF2369	0.49	-1.6
2,392,431	+		GFF2369	0.50	-0.2
2,392,442	+		GFF2369	0.50	-0.7
2,392,442	+		GFF2369	0.50	-0.2
2,392,472	+		GFF2369	0.52	-0.6
2,392,494	-		GFF2369	0.53	-1.1
2,392,504	-		GFF2369	0.53	-1.6
2,392,520	+		GFF2369	0.54	-1.2
2,392,530	+		GFF2369	0.55	-0.7
2,392,530	+		GFF2369	0.55	+0.4
2,392,552	+		GFF2369	0.56	-0.6
2,392,560	-		GFF2369	0.56	-1.7
2,392,583	+		GFF2369	0.57	-1.2
2,392,600	-		GFF2369	0.58	-1.9
2,392,600	-		GFF2369	0.58	-0.7
2,392,695	+		GFF2369	0.63	-0.3
2,392,703	-		GFF2369	0.64	-2.1
2,392,703	-		GFF2369	0.64	-1.5
2,392,703	-		GFF2369	0.64	-0.7
2,392,703	-		GFF2369	0.64	-1.7
2,392,705	-		GFF2369	0.64	-1.1
2,392,749	+		GFF2369	0.66	+0.5
2,392,749	+		GFF2369	0.66	-1.6
2,392,757	-		GFF2369	0.66	-0.7
2,392,757	-		GFF2369	0.66	-2.3
2,392,770	+		GFF2369	0.67	-0.5
2,392,776	-		GFF2369	0.67	-0.8
2,392,778	-		GFF2369	0.67	-1.3
2,392,783	-		GFF2369	0.68	-1.3
2,392,794	+		GFF2369	0.68	-0.3
2,392,800	-		GFF2369	0.69	-1.4
2,392,848	-		GFF2369	0.71	-0.9
2,392,860	+		GFF2369	0.72	-0.6
2,392,870	-		GFF2369	0.72	-2.1
2,392,870	-		GFF2369	0.72	-0.1
2,392,926	+		GFF2369	0.75	+0.3
2,392,939	+		GFF2369	0.76	-1.7
2,392,939	+		GFF2369	0.76	-0.2
2,392,939	+		GFF2369	0.76	-1.6
2,392,940	-		GFF2369	0.76	-0.8
2,392,944	+		GFF2369	0.76	-2.0
2,392,947	-		GFF2369	0.76	+0.3
2,392,952	-		GFF2369	0.76	-1.8
2,392,953	+		GFF2369	0.76	-1.1
2,392,955	+		GFF2369	0.77	-2.1
2,392,957	-		GFF2369	0.77	-2.1
2,392,972	+		GFF2369	0.77	+0.8
2,392,972	+		GFF2369	0.77	-0.3
2,392,981	+		GFF2369	0.78	+0.9
2,392,984	+		GFF2369	0.78	+0.2
2,392,995	-		GFF2369	0.79	-0.3
2,393,021	-		GFF2369	0.80	-1.0
2,393,045	-		GFF2369	0.81	-1.1
2,393,048	+		GFF2369	0.81	-0.8
2,393,048	+		GFF2369	0.81	-0.3
2,393,048	+		GFF2369	0.81	-1.6
2,393,070	+		GFF2369	0.82	-0.5
2,393,070	+		GFF2369	0.82	-1.0
2,393,078	-		GFF2369	0.83	+0.4
2,393,078	-		GFF2369	0.83	-0.7
2,393,092	+		GFF2369	0.84	-1.5
2,393,100	-		GFF2369	0.84	-0.7
2,393,149	+		GFF2369	0.86	+0.4
2,393,157	-		GFF2369	0.87	-1.3
2,393,169	-		GFF2369	0.87	-0.6
2,393,198	+		GFF2369	0.89	+1.4
2,393,203	+		GFF2369	0.89	-0.9
2,393,226	+				+0.3
2,393,262	+				-0.6
2,393,262	+				+1.6
2,393,263	+				+1.3
2,393,318	-				+1.0
2,393,331	+				+0.2
2,393,331	+				-0.4
2,393,334	+				-0.6
2,393,338	+				-0.6
2,393,338	+				-0.3
2,393,339	-				+1.1
2,393,339	-				-1.3
2,393,339	-				-1.5
2,393,346	-				+0.6
2,393,346	-				-2.2
2,393,352	+				+0.2
2,393,352	+				-0.1
2,393,371	+				-0.3
2,393,415	-				-1.0
2,393,440	-				-1.7
2,393,447	+				-1.2
2,393,448	-				-0.8
2,393,468	+				-1.0
2,393,468	+				-1.8
2,393,468	+				-0.6
2,393,476	+				-0.6
2,393,476	-				-1.0
2,393,481	-				-1.3
2,393,483	+				-2.0
2,393,483	+				-1.9
2,393,483	+				-1.4
2,393,486	-				-1.5
2,393,491	-				-1.5
2,393,496	-				-0.7
2,393,524	+				-1.8
2,393,529	+				-1.3
2,393,534	+				-1.2
2,393,545	+				-1.7
2,393,545	+				-0.9
2,393,604	+		GFF2370	0.12	-1.0
2,393,605	-		GFF2370	0.13	-2.0
2,393,605	-		GFF2370	0.13	-1.3
2,393,625	-		GFF2370	0.14	-1.0
2,393,636	-		GFF2370	0.15	-0.5
2,393,662	+		GFF2370	0.16	-0.8
2,393,662	+		GFF2370	0.16	-0.8
2,393,670	-		GFF2370	0.17	-1.5
2,393,731	-		GFF2370	0.21	-1.5
2,393,765	+		GFF2370	0.23	-2.3
2,393,765	+		GFF2370	0.23	-1.5
2,393,765	+		GFF2370	0.23	-2.3
2,393,766	+		GFF2370	0.23	-1.9
2,393,773	-		GFF2370	0.24	-2.3
2,393,773	-		GFF2370	0.24	-1.2
2,393,773	-		GFF2370	0.24	-1.8
2,393,773	-		GFF2370	0.24	-0.8
2,393,773	-		GFF2370	0.24	-1.3
2,393,773	-		GFF2370	0.24	-1.2
2,393,794	+		GFF2370	0.25	-0.7
2,393,802	-		GFF2370	0.25	-1.0
2,393,834	-		GFF2370	0.28	-1.4
2,393,851	-		GFF2370	0.29	-1.3
2,393,868	+		GFF2370	0.30	-0.9
2,393,873	+		GFF2370	0.30	-0.5
2,393,874	-		GFF2370	0.30	-1.2
2,393,878	+		GFF2370	0.30	-2.1
2,393,886	-		GFF2370	0.31	-0.5
2,393,886	-		GFF2370	0.31	-2.6
2,393,888	-		GFF2370	0.31	-2.1
2,393,890	+		GFF2370	0.31	-1.6
2,393,903	+		GFF2370	0.32	-1.9
2,393,937	+		GFF2370	0.34	-0.5
2,393,937	+		GFF2370	0.34	+0.1
2,393,941	+		GFF2370	0.35	-0.3
2,393,941	+		GFF2370	0.35	-0.3
2,393,941	+		GFF2370	0.35	-1.4
2,393,941	+		GFF2370	0.35	-0.5
2,393,949	-		GFF2370	0.35	-1.3
2,393,949	-		GFF2370	0.35	-1.0
2,393,949	-		GFF2370	0.35	-1.5
2,393,949	-		GFF2370	0.35	-1.4
2,393,949	-		GFF2370	0.35	-1.2
2,393,949	-		GFF2370	0.35	-2.1
2,393,949	-		GFF2370	0.35	-3.8
2,393,957	+		GFF2370	0.36	-0.9
2,393,966	+		GFF2370	0.36	-1.3
2,393,974	-		GFF2370	0.37	-1.2
2,394,002	+		GFF2370	0.39	-1.6
2,394,021	-		GFF2370	0.40	-1.6
2,394,046	+		GFF2370	0.41	-2.5
2,394,108	-		GFF2370	0.46	-1.2
2,394,142	+		GFF2370	0.48	-2.5
2,394,142	+		GFF2370	0.48	-1.5
2,394,142	+		GFF2370	0.48	-2.0
2,394,142	+		GFF2370	0.48	-1.0
2,394,142	+		GFF2370	0.48	-1.1
2,394,145	+		GFF2370	0.48	-1.4
2,394,150	-		GFF2370	0.48	-1.3
2,394,150	-		GFF2370	0.48	-2.1
2,394,150	-		GFF2370	0.48	-2.0
2,394,150	-		GFF2370	0.48	-1.7
2,394,150	-		GFF2370	0.48	-1.5
2,394,150	-		GFF2370	0.48	-0.4
2,394,150	-		GFF2370	0.48	-0.9
2,394,151	-		GFF2370	0.48	-0.5
2,394,158	+		GFF2370	0.49	-2.5
2,394,174	-		GFF2370	0.50	-1.3
2,394,188	+		GFF2370	0.51	-1.7
2,394,192	+		GFF2370	0.51	-1.3
2,394,193	+		GFF2370	0.51	-2.0
2,394,196	-		GFF2370	0.51	-1.6
2,394,199	+		GFF2370	0.52	-2.3
2,394,200	-		GFF2370	0.52	-0.5
2,394,228	+		GFF2370	0.53	-0.3
2,394,234	-		GFF2370	0.54	-2.0
2,394,234	-		GFF2370	0.54	-0.9
2,394,238	+		GFF2370	0.54	-0.7
2,394,246	-		GFF2370	0.55	-1.3
2,394,246	-		GFF2370	0.55	-1.0
2,394,257	+		GFF2370	0.55	-1.3
2,394,258	-		GFF2370	0.55	-0.5
2,394,265	+		GFF2370	0.56	-0.3
2,394,270	+		GFF2370	0.56	-1.6
2,394,270	+		GFF2370	0.56	-0.7
2,394,273	-		GFF2370	0.56	-2.1
2,394,278	-		GFF2370	0.57	-2.0
2,394,285	+		GFF2370	0.57	-2.3
2,394,285	+		GFF2370	0.57	-2.7
2,394,285	+		GFF2370	0.57	-1.2
2,394,285	+		GFF2370	0.57	-1.5
2,394,285	+		GFF2370	0.57	+0.3
2,394,285	+		GFF2370	0.57	-0.6
2,394,285	+		GFF2370	0.57	-0.5
2,394,285	+		GFF2370	0.57	-1.3
2,394,285	+		GFF2370	0.57	+0.3
2,394,293	-		GFF2370	0.58	-1.6
2,394,293	-		GFF2370	0.58	-1.6
2,394,293	-		GFF2370	0.58	-1.0
2,394,293	-		GFF2370	0.58	-1.9
2,394,293	-		GFF2370	0.58	-1.8
2,394,293	-		GFF2370	0.58	-1.0
2,394,293	-		GFF2370	0.58	-2.1
2,394,293	-		GFF2370	0.58	-1.8
2,394,293	-		GFF2370	0.58	-2.2
2,394,293	-		GFF2370	0.58	-2.1
2,394,293	-		GFF2370	0.58	-0.9
2,394,303	-		GFF2370	0.58	-2.0
2,394,303	-		GFF2370	0.58	-1.6
2,394,359	+		GFF2370	0.62	-2.2
2,394,369	-		GFF2370	0.63	-1.0
2,394,389	+		GFF2370	0.64	-0.3
2,394,389	+		GFF2370	0.64	-2.0
2,394,397	-		GFF2370	0.65	-1.0