Strain Fitness in Sphingobium sp. HT1-2 around GFF4406

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,405,803	+		GFF4405	0.29	-1.8
4,405,804	+		GFF4405	0.29	+0.2
4,405,809	+		GFF4405	0.30	-1.6
4,405,809	+		GFF4405	0.30	+0.7
4,405,811	-		GFF4405	0.30	-0.0
4,405,811	-		GFF4405	0.30	+0.0
4,405,811	-		GFF4405	0.30	+0.4
4,405,811	-		GFF4405	0.30	-0.1
4,405,828	-		GFF4405	0.31	+0.0
4,405,829	-		GFF4405	0.31	-1.1
4,405,830	+		GFF4405	0.31	+0.1
4,405,831	+		GFF4405	0.31	-0.5
4,405,838	-		GFF4405	0.32	-0.4
4,405,839	-		GFF4405	0.32	+0.1
4,405,844	+		GFF4405	0.33	-1.1
4,405,844	+		GFF4405	0.33	-0.1
4,405,844	+		GFF4405	0.33	+0.2
4,405,844	+		GFF4405	0.33	+0.7
4,405,844	+		GFF4405	0.33	-0.3
4,405,844	+		GFF4405	0.33	-0.7
4,405,844	+		GFF4405	0.33	-2.0
4,405,844	+		GFF4405	0.33	-1.5
4,405,844	+		GFF4405	0.33	-0.5
4,405,844	+		GFF4405	0.33	+0.1
4,405,844	+		GFF4405	0.33	+0.2
4,405,844	+		GFF4405	0.33	-1.5
4,405,844	+		GFF4405	0.33	-1.7
4,405,851	+		GFF4405	0.33	-0.8
4,405,852	-		GFF4405	0.33	-1.0
4,405,852	-		GFF4405	0.33	+0.6
4,405,852	-		GFF4405	0.33	+0.2
4,405,852	-		GFF4405	0.33	+1.3
4,405,852	-		GFF4405	0.33	-0.9
4,405,852	-		GFF4405	0.33	+0.2
4,405,852	-		GFF4405	0.33	-0.6
4,405,852	-		GFF4405	0.33	+1.2
4,405,852	-		GFF4405	0.33	-0.4
4,405,852	-		GFF4405	0.33	-0.9
4,405,854	+		GFF4405	0.33	-0.9
4,405,854	+		GFF4405	0.33	-0.7
4,405,854	+		GFF4405	0.33	-2.3
4,405,862	-		GFF4405	0.34	-0.4
4,405,862	-		GFF4405	0.34	+0.4
4,405,862	-		GFF4405	0.34	-0.9
4,405,862	-		GFF4405	0.34	+0.3
4,405,875	+		GFF4405	0.35	-0.7
4,405,877	+		GFF4405	0.35	+0.3
4,405,882	+		GFF4405	0.36	-0.6
4,405,883	-		GFF4405	0.36	+0.0
4,405,883	-		GFF4405	0.36	-0.2
4,405,884	-		GFF4405	0.36	-0.6
4,405,885	+		GFF4405	0.36	-0.5
4,405,886	+		GFF4405	0.36	-0.4
4,405,893	-		GFF4405	0.37	+0.3
4,405,895	-		GFF4405	0.37	-1.0
4,405,913	+		GFF4405	0.38	-2.3
4,405,913	+		GFF4405	0.38	+0.8
4,405,913	+		GFF4405	0.38	-0.4
4,405,913	+		GFF4405	0.38	+0.8
4,405,914	+		GFF4405	0.38	+1.0
4,405,914	+		GFF4405	0.38	-1.4
4,405,914	+		GFF4405	0.38	-1.0
4,405,917	-		GFF4405	0.39	+0.9
4,405,917	-		GFF4405	0.39	-0.0
4,405,920	+		GFF4405	0.39	-1.0
4,405,920	+		GFF4405	0.39	-1.2
4,405,921	-		GFF4405	0.39	-0.2
4,405,921	-		GFF4405	0.39	+0.4
4,405,922	-		GFF4405	0.39	-0.5
4,405,922	-		GFF4405	0.39	+0.1
4,405,923	-		GFF4405	0.39	-0.1
4,405,923	-		GFF4405	0.39	-1.7
4,405,928	-		GFF4405	0.39	-0.5
4,405,928	-		GFF4405	0.39	-1.9
4,405,928	-		GFF4405	0.39	-0.8
4,405,928	-		GFF4405	0.39	+0.1
4,405,928	-		GFF4405	0.39	-0.5
4,405,928	-		GFF4405	0.39	-0.7
4,405,928	-		GFF4405	0.39	-1.9
4,405,933	-		GFF4405	0.40	+0.0
4,405,933	-		GFF4405	0.40	-0.8
4,405,940	+		GFF4405	0.40	-0.9
4,405,940	+		GFF4405	0.40	+0.7
4,405,940	+		GFF4405	0.40	-2.1
4,405,940	+		GFF4405	0.40	-0.5
4,405,940	+		GFF4405	0.40	-0.8
4,405,940	+		GFF4405	0.40	+0.1
4,405,940	+		GFF4405	0.40	+0.0
4,405,940	+		GFF4405	0.40	-1.7
4,405,940	+		GFF4405	0.40	-0.8
4,405,940	+		GFF4405	0.40	-0.4
4,405,940	+		GFF4405	0.40	-0.8
4,405,940	+		GFF4405	0.40	-0.2
4,405,940	+		GFF4405	0.40	-0.6
4,405,940	+		GFF4405	0.40	+0.1
4,405,940	+		GFF4405	0.40	-0.5
4,405,940	+		GFF4405	0.40	+0.1
4,405,940	+		GFF4405	0.40	-0.7
4,405,940	+		GFF4405	0.40	+1.2
4,405,940	+		GFF4405	0.40	-1.0
4,405,940	+		GFF4405	0.40	-0.1
4,405,940	+		GFF4405	0.40	+0.5
4,405,940	+		GFF4405	0.40	-0.3
4,405,948	-		GFF4405	0.41	+0.3
4,405,948	-		GFF4405	0.41	-1.2
4,405,948	-		GFF4405	0.41	-1.9
4,405,948	-		GFF4405	0.41	+1.2
4,405,948	-		GFF4405	0.41	-1.1
4,405,948	-		GFF4405	0.41	+0.7
4,405,948	-		GFF4405	0.41	-1.9
4,405,948	-		GFF4405	0.41	+0.1
4,405,948	-		GFF4405	0.41	-1.3
4,405,948	-		GFF4405	0.41	-0.6
4,405,948	-		GFF4405	0.41	+1.2
4,405,948	-		GFF4405	0.41	+1.1
4,405,948	-		GFF4405	0.41	+0.2
4,405,948	-		GFF4405	0.41	-0.2
4,405,948	-		GFF4405	0.41	-0.2
4,405,948	-		GFF4405	0.41	-1.7
4,405,948	-		GFF4405	0.41	+0.7
4,405,948	-		GFF4405	0.41	+0.8
4,405,948	-		GFF4405	0.41	+0.4
4,405,948	-		GFF4405	0.41	+0.2
4,405,948	-		GFF4405	0.41	-1.6
4,405,948	-		GFF4405	0.41	-0.0
4,405,948	-		GFF4405	0.41	+0.1
4,405,948	-		GFF4405	0.41	+0.4
4,405,954	-		GFF4405	0.42	-0.8
4,405,964	-		GFF4405	0.42	-1.3
4,406,012	-		GFF4405	0.46	+0.5
4,406,012	-		GFF4405	0.46	-0.4
4,406,012	-		GFF4405	0.46	-0.5
4,406,024	-		GFF4405	0.47	+0.1
4,406,037	+		GFF4405	0.48	+0.2
4,406,051	+		GFF4405	0.50	+0.7
4,406,053	+		GFF4405	0.50	-0.0
4,406,053	+		GFF4405	0.50	+0.5
4,406,056	+		GFF4405	0.50	-0.2
4,406,061	-		GFF4405	0.50	-0.0
4,406,061	-		GFF4405	0.50	+0.1
4,406,061	-		GFF4405	0.50	+0.0
4,406,066	+		GFF4405	0.51	+1.2
4,406,066	+		GFF4405	0.51	+0.2
4,406,069	-		GFF4405	0.51	-0.0
4,406,069	-		GFF4405	0.51	+0.3
4,406,075	+		GFF4405	0.52	-0.4
4,406,083	+		GFF4405	0.52	+0.0
4,406,106	-		GFF4405	0.54	-0.3
4,406,106	-		GFF4405	0.54	+0.4
4,406,116	-		GFF4405	0.55	+0.5
4,406,116	-		GFF4405	0.55	-1.1
4,406,116	-		GFF4405	0.55	+2.1
4,406,116	-		GFF4405	0.55	+0.1
4,406,116	-		GFF4405	0.55	-0.2
4,406,116	-		GFF4405	0.55	-0.8
4,406,116	-		GFF4405	0.55	+0.1
4,406,116	-		GFF4405	0.55	+0.0
4,406,116	-		GFF4405	0.55	-1.1
4,406,116	-		GFF4405	0.55	-0.7
4,406,116	-		GFF4405	0.55	+0.5
4,406,116	-		GFF4405	0.55	+0.4
4,406,116	-		GFF4405	0.55	-2.6
4,406,116	-		GFF4405	0.55	-0.1
4,406,116	-		GFF4405	0.55	-0.1
4,406,116	-		GFF4405	0.55	-0.2
4,406,123	+		GFF4405	0.56	-0.4
4,406,126	-		GFF4405	0.56	-0.5
4,406,126	-		GFF4405	0.56	+0.4
4,406,131	+		GFF4405	0.56	+0.1
4,406,140	+		GFF4405	0.57	-0.2
4,406,142	+		GFF4405	0.57	-0.7
4,406,142	+		GFF4405	0.57	+0.3
4,406,142	+		GFF4405	0.57	+0.3
4,406,142	+		GFF4405	0.57	-0.7
4,406,142	+		GFF4405	0.57	-0.6
4,406,142	+		GFF4405	0.57	-0.6
4,406,142	+		GFF4405	0.57	-2.6
4,406,142	+		GFF4405	0.57	+0.4
4,406,142	+		GFF4405	0.57	+1.0
4,406,142	+		GFF4405	0.57	+1.0
4,406,142	+		GFF4405	0.57	-0.2
4,406,142	+		GFF4405	0.57	+0.2
4,406,142	+		GFF4405	0.57	+0.3
4,406,142	+		GFF4405	0.57	+0.5
4,406,174	-		GFF4405	0.60	-1.2
4,406,177	-		GFF4405	0.60	-0.6
4,406,179	-		GFF4405	0.60	-0.2
4,406,184	+		GFF4405	0.61	-2.8
4,406,187	-		GFF4405	0.61	-2.8
4,406,189	+		GFF4405	0.61	-0.4
4,406,212	+		GFF4405	0.63	-0.0
4,406,220	-		GFF4405	0.64	-1.5
4,406,225	-		GFF4405	0.64	-0.4
4,406,233	+		GFF4405	0.65	-2.4
4,406,233	+		GFF4405	0.65	+0.1
4,406,233	+		GFF4405	0.65	-1.7
4,406,233	+		GFF4405	0.65	-0.0
4,406,248	+		GFF4405	0.66	+0.6
4,406,262	-		GFF4405	0.67	+0.1
4,406,269	+		GFF4405	0.68	-0.6
4,406,269	+		GFF4405	0.68	+0.1
4,406,269	+		GFF4405	0.68	-0.8
4,406,269	+		GFF4405	0.68	+0.5
4,406,269	+		GFF4405	0.68	-2.3
4,406,269	+		GFF4405	0.68	-1.1
4,406,269	+		GFF4405	0.68	+0.1
4,406,277	-		GFF4405	0.68	-1.6
4,406,277	-		GFF4405	0.68	-0.9
4,406,277	-		GFF4405	0.68	-1.5
4,406,277	-		GFF4405	0.68	-1.2
4,406,277	-		GFF4405	0.68	-0.5
4,406,277	-		GFF4405	0.68	+0.0
4,406,277	-		GFF4405	0.68	-0.5
4,406,293	+		GFF4405	0.70	-0.6
4,406,299	+		GFF4405	0.70	+0.1
4,406,304	+		GFF4405	0.70	-1.0
4,406,307	-		GFF4405	0.71	-0.6
4,406,312	-		GFF4405	0.71	-0.5
4,406,312	-		GFF4405	0.71	-0.6
4,406,312	-		GFF4405	0.71	-2.6
4,406,312	-		GFF4405	0.71	-0.2
4,406,312	-		GFF4405	0.71	+0.3
4,406,312	-		GFF4405	0.71	-0.8
4,406,312	-		GFF4405	0.71	-0.5
4,406,317	-		GFF4405	0.72	-0.8
4,406,331	-		GFF4405	0.73	+0.5
4,406,331	-		GFF4405	0.73	+0.1
4,406,343	+		GFF4405	0.74	+0.4
4,406,369	+		GFF4405	0.76	-1.9
4,406,369	+		GFF4405	0.76	-1.1
4,406,371	+		GFF4405	0.76	-0.6
4,406,375	+		GFF4405	0.76	-0.7
4,406,375	+		GFF4405	0.76	+0.4
4,406,377	-		GFF4405	0.76	-0.7
4,406,383	+		GFF4405	0.77	-0.4
4,406,383	+		GFF4405	0.77	-0.0
4,406,388	+		GFF4405	0.77	-0.6
4,406,391	-		GFF4405	0.78	-1.3
4,406,392	+		GFF4405	0.78	+0.1
4,406,392	+		GFF4405	0.78	-0.6
4,406,399	+		GFF4405	0.78	-1.2
4,406,402	+		GFF4405	0.79	+0.7
4,406,402	+		GFF4405	0.79	-0.9
4,406,402	+		GFF4405	0.79	+0.6
4,406,402	+		GFF4405	0.79	-1.4
4,406,402	+		GFF4405	0.79	+0.1
4,406,402	+		GFF4405	0.79	+0.9
4,406,402	+		GFF4405	0.79	-0.3
4,406,402	+		GFF4405	0.79	+0.1
4,406,407	+		GFF4405	0.79	+0.2
4,406,407	+		GFF4405	0.79	-1.5
4,406,410	-		GFF4405	0.79	+0.0
4,406,410	-		GFF4405	0.79	-0.6
4,406,410	-		GFF4405	0.79	-0.0
4,406,410	-		GFF4405	0.79	-1.5
4,406,410	-		GFF4405	0.79	-0.3
4,406,410	-		GFF4405	0.79	-1.7
4,406,410	-		GFF4405	0.79	-0.3
4,406,410	-		GFF4405	0.79	-1.2
4,406,410	-		GFF4405	0.79	-1.3
4,406,410	-		GFF4405	0.79	-0.6
4,406,410	-		GFF4405	0.79	+0.3
4,406,415	-		GFF4405	0.80	-0.8
4,406,420	-		GFF4405	0.80	+0.3
4,406,420	-		GFF4405	0.80	-0.4
4,406,420	-		GFF4405	0.80	+0.3
4,406,425	-		GFF4405	0.80	+0.0
4,406,425	-		GFF4405	0.80	+1.2
4,406,426	-		GFF4405	0.81	-0.7
4,406,432	-		GFF4405	0.81	-1.8
4,406,433	-		GFF4405	0.81	-0.6
4,406,440	-		GFF4405	0.82	-0.7
4,406,440	-		GFF4405	0.82	+0.5
4,406,440	-		GFF4405	0.82	+0.4
4,406,697	+				+0.4
4,406,706	+				-1.0
4,406,706	+				-0.0
4,406,706	+				-0.6
4,406,706	+				-1.7
4,406,721	-				-0.5
4,406,721	-				-2.0
4,406,723	+				+0.6
4,406,723	+				-0.7
4,406,723	+				+1.4
4,406,731	-				+0.2
4,406,731	-				+0.2
4,406,733	-				+0.4
4,406,733	-				-0.7
4,406,775	+				-0.4
4,406,783	-				-0.2
4,406,799	+				-0.7
4,406,805	+				-0.6
4,406,815	+				+0.4
4,406,889	-		GFF4406	0.70	+0.2
4,406,917	-				-0.8
4,406,917	-				+0.1
4,406,919	+				-1.6
4,406,919	+				-0.3
4,406,919	+				+0.3
4,406,919	+				-0.9
4,406,919	+				-1.6
4,406,919	+				-0.3
4,406,919	+				+0.3
4,406,919	+				+0.6
4,406,919	+				+0.3
4,406,919	+				-1.8
4,406,919	+				-0.6
4,406,919	+				-1.2
4,406,927	-				-0.1
4,406,927	-				-0.5
4,406,927	-				-0.9
4,406,927	-				+0.1
4,406,927	-				-0.6
4,406,927	-				-0.0
4,406,927	-				+0.4
4,406,927	-				-0.4
4,406,927	-				-0.5
4,406,927	-				+0.3
4,406,927	-				+0.6
4,406,927	-				-1.4
4,406,927	-				-2.9
4,406,927	-				-0.5
4,406,927	-				-1.7
4,406,927	-				+0.4
4,406,927	-				+0.1
4,406,927	-				-2.2
4,406,927	-				-0.4
4,406,927	-				-1.9
4,406,927	-				-0.6
4,406,927	-				+1.0
4,406,929	+				-1.6
4,406,933	+				-1.5
4,406,933	+				-0.5
4,406,941	-				+0.4
4,406,941	-				-0.6
4,406,956	-				+0.2
4,406,961	+				-2.0
4,406,964	-				+0.1
4,406,964	-				-0.1
4,406,987	+				+0.0
4,406,995	-				+0.4
4,406,997	-				-2.4
4,406,999	+				-0.5
4,407,018	-				+0.5
4,407,049	+				+0.2
4,407,094	+				-2.3
4,407,094	+				+1.6
4,407,094	+				-0.4
4,407,102	-				-0.7
4,407,102	-				+0.1
4,407,102	-				-1.1
4,407,112	-				-2.2
4,407,134	-				-0.6
4,407,134	-				-0.7
4,407,140	-				-2.8
4,407,146	+				+0.1
4,407,146	+				-0.4
4,407,146	+				-1.6
4,407,146	+				-0.2
4,407,146	+				-0.6
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