Strain Fitness in Sphingobium sp. HT1-2 around GFF390

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF389 and GFF390 are separated by 10 nucleotidesGFF390 and GFF391 are separated by 4 nucleotidesGFF391 and GFF392 overlap by 4 nucleotides GFF389 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 380,664 to 381,908 GFF389 GFF390 - 'Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)' transl_table=11, at 381,919 to 382,338 GFF390 GFF391 - hypothetical protein, at 382,343 to 382,747 GFF391 GFF392 - Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80), at 382,744 to 383,511 GFF392 Position (kb) 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1at 382.341 kb on - strandat 382.341 kb on - strandat 382.350 kb on - strandat 382.407 kb on + strand, within GFF391at 382.415 kb on - strand, within GFF391at 382.415 kb on - strand, within GFF391at 382.415 kb on - strand, within GFF391at 382.417 kb on + strand, within GFF391at 382.417 kb on + strand, within GFF391at 382.419 kb on + strand, within GFF391at 382.424 kb on + strand, within GFF391at 382.424 kb on + strand, within GFF391at 382.428 kb on + strand, within GFF391at 382.432 kb on + strand, within GFF391at 382.433 kb on + strand, within GFF391at 382.448 kb on - strand, within GFF391at 382.449 kb on + strand, within GFF391at 382.457 kb on - strand, within GFF391at 382.457 kb on - strand, within GFF391at 382.457 kb on - strand, within GFF391at 382.481 kb on + strand, within GFF391at 382.481 kb on + strand, within GFF391at 382.489 kb on - strand, within GFF391at 382.510 kb on - strand, within GFF391at 382.510 kb on - strand, within GFF391at 382.510 kb on - strand, within GFF391at 382.515 kb on + strand, within GFF391at 382.547 kb on + strand, within GFF391at 382.556 kb on + strand, within GFF391at 382.569 kb on - strand, within GFF391at 382.569 kb on - strand, within GFF391at 382.574 kb on + strand, within GFF391at 382.574 kb on + strand, within GFF391at 382.574 kb on + strand, within GFF391at 382.574 kb on + strand, within GFF391at 382.574 kb on + strand, within GFF391at 382.582 kb on - strand, within GFF391at 382.582 kb on - strand, within GFF391at 382.582 kb on - strand, within GFF391at 382.587 kb on - strand, within GFF391at 382.625 kb on + strand, within GFF391at 382.625 kb on + strand, within GFF391at 382.625 kb on - strand, within GFF391at 382.633 kb on - strand, within GFF391at 382.633 kb on - strand, within GFF391at 382.633 kb on - strand, within GFF391at 382.633 kb on - strand, within GFF391at 382.661 kb on + strand, within GFF391at 382.669 kb on - strand, within GFF391at 382.669 kb on - strand, within GFF391at 382.669 kb on - strand, within GFF391at 382.669 kb on - strand, within GFF391at 382.669 kb on - strand, within GFF391at 382.675 kb on + strand, within GFF391at 382.683 kb on - strand, within GFF391at 382.683 kb on - strand, within GFF391at 382.683 kb on - strand, within GFF391at 382.683 kb on - strand, within GFF391at 382.683 kb on - strand, within GFF391at 382.686 kb on + strand, within GFF391at 382.689 kb on - strand, within GFF391at 382.690 kb on + strand, within GFF391at 382.697 kb on + strand, within GFF391at 382.700 kb on + strand, within GFF391at 382.700 kb on + strand, within GFF391at 382.700 kb on + strand, within GFF391at 382.700 kb on + strand, within GFF391at 382.700 kb on + strand, within GFF391at 382.700 kb on + strand, within GFF391at 382.708 kb on - strandat 382.723 kb on - strandat 382.731 kb on + strandat 382.739 kb on - strandat 382.740 kb on + strandat 382.750 kb on - strandat 382.762 kb on + strandat 382.765 kb on + strandat 382.775 kb on - strandat 382.787 kb on - strandat 382.792 kb on - strandat 382.817 kb on + strandat 382.818 kb on + strandat 382.818 kb on + strandat 382.818 kb on + strandat 382.818 kb on + strandat 382.818 kb on + strandat 382.818 kb on + strandat 382.826 kb on - strand, within GFF392at 382.826 kb on - strand, within GFF392at 382.826 kb on - strand, within GFF392at 382.832 kb on + strand, within GFF392at 382.835 kb on - strand, within GFF392at 382.861 kb on - strand, within GFF392at 382.869 kb on - strand, within GFF392at 382.875 kb on + strand, within GFF392at 382.878 kb on - strand, within GFF392at 382.881 kb on + strand, within GFF392at 382.884 kb on - strand, within GFF392at 382.910 kb on + strand, within GFF392at 382.920 kb on + strand, within GFF392at 382.934 kb on + strand, within GFF392at 382.934 kb on + strand, within GFF392at 382.939 kb on + strand, within GFF392at 382.947 kb on - strand, within GFF392at 382.947 kb on - strand, within GFF392at 382.952 kb on - strand, within GFF392at 382.952 kb on - strand, within GFF392at 382.958 kb on + strand, within GFF392at 382.968 kb on + strand, within GFF392at 382.971 kb on - strand, within GFF392at 382.986 kb on - strand, within GFF392at 382.997 kb on + strand, within GFF392at 383.001 kb on - strand, within GFF392at 383.005 kb on - strand, within GFF392at 383.028 kb on + strand, within GFF392at 383.028 kb on + strand, within GFF392at 383.036 kb on - strand, within GFF392at 383.075 kb on - strand, within GFF392at 383.076 kb on + strand, within GFF392at 383.103 kb on + strand, within GFF392at 383.103 kb on + strand, within GFF392at 383.113 kb on + strand, within GFF392at 383.116 kb on - strand, within GFF392at 383.156 kb on - strand, within GFF392at 383.156 kb on - strand, within GFF392at 383.170 kb on + strand, within GFF392at 383.187 kb on + strand, within GFF392at 383.187 kb on + strand, within GFF392at 383.246 kb on + strand, within GFF392at 383.247 kb on + strand, within GFF392at 383.274 kb on + strand, within GFF392at 383.282 kb on - strand, within GFF392at 383.325 kb on - strand, within GFF392

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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382,341 - +1.5
382,341 - -1.7
382,350 - -0.2
382,407 + GFF391 0.16 +1.0
382,415 - GFF391 0.18 +0.1
382,415 - GFF391 0.18 -1.8
382,415 - GFF391 0.18 -0.1
382,417 + GFF391 0.18 +0.1
382,417 + GFF391 0.18 -0.3
382,419 + GFF391 0.19 -0.6
382,424 + GFF391 0.20 -0.2
382,424 + GFF391 0.20 -0.2
382,428 + GFF391 0.21 +0.1
382,432 + GFF391 0.22 -0.9
382,433 + GFF391 0.22 -0.6
382,448 - GFF391 0.26 -0.8
382,449 + GFF391 0.26 +1.0
382,457 - GFF391 0.28 -1.2
382,457 - GFF391 0.28 -0.6
382,457 - GFF391 0.28 -1.2
382,481 + GFF391 0.34 +1.0
382,481 + GFF391 0.34 -0.2
382,489 - GFF391 0.36 +0.6
382,510 - GFF391 0.41 -0.0
382,510 - GFF391 0.41 -0.2
382,510 - GFF391 0.41 +0.9
382,515 + GFF391 0.42 +0.7
382,547 + GFF391 0.50 -0.2
382,556 + GFF391 0.53 +1.1
382,569 - GFF391 0.56 -1.9
382,569 - GFF391 0.56 +0.2
382,574 + GFF391 0.57 +0.9
382,574 + GFF391 0.57 +0.0
382,574 + GFF391 0.57 -0.2
382,574 + GFF391 0.57 +0.2
382,574 + GFF391 0.57 -1.4
382,582 - GFF391 0.59 +0.1
382,582 - GFF391 0.59 -0.2
382,582 - GFF391 0.59 -1.2
382,587 - GFF391 0.60 +0.4
382,625 + GFF391 0.70 +0.7
382,625 + GFF391 0.70 -0.3
382,625 - GFF391 0.70 -2.2
382,633 - GFF391 0.72 -0.1
382,633 - GFF391 0.72 +0.3
382,633 - GFF391 0.72 +0.3
382,633 - GFF391 0.72 -1.8
382,661 + GFF391 0.79 +0.4
382,669 - GFF391 0.80 -0.0
382,669 - GFF391 0.80 +0.4
382,669 - GFF391 0.80 -1.4
382,669 - GFF391 0.80 -1.5
382,669 - GFF391 0.80 -0.5
382,675 + GFF391 0.82 +0.2
382,683 - GFF391 0.84 -0.2
382,683 - GFF391 0.84 -0.4
382,683 - GFF391 0.84 -1.3
382,683 - GFF391 0.84 +0.3
382,683 - GFF391 0.84 -0.3
382,686 + GFF391 0.85 -1.8
382,689 - GFF391 0.85 +1.2
382,690 + GFF391 0.86 -0.6
382,697 + GFF391 0.87 +0.0
382,700 + GFF391 0.88 -0.1
382,700 + GFF391 0.88 -0.5
382,700 + GFF391 0.88 -2.0
382,700 + GFF391 0.88 +0.6
382,700 + GFF391 0.88 +1.4
382,700 + GFF391 0.88 +0.1
382,708 - +0.1
382,723 - -0.2
382,731 + +0.7
382,739 - -0.3
382,740 + +1.2
382,750 - -0.4
382,762 + +0.7
382,765 + -0.5
382,775 - +0.7
382,787 - -0.2
382,792 - -1.9
382,817 + -1.0
382,818 + -0.9
382,818 + -3.2
382,818 + +0.6
382,818 + -1.5
382,818 + -2.2
382,818 + -0.8
382,826 - GFF392 0.11 -1.4
382,826 - GFF392 0.11 -1.4
382,826 - GFF392 0.11 -2.9
382,832 + GFF392 0.11 +0.5
382,835 - GFF392 0.12 -1.2
382,861 - GFF392 0.15 -2.9
382,869 - GFF392 0.16 -0.6
382,875 + GFF392 0.17 +0.3
382,878 - GFF392 0.17 -3.1
382,881 + GFF392 0.18 +0.8
382,884 - GFF392 0.18 -0.0
382,910 + GFF392 0.22 -0.9
382,920 + GFF392 0.23 +0.3
382,934 + GFF392 0.25 -0.4
382,934 + GFF392 0.25 -2.3
382,939 + GFF392 0.25 -1.6
382,947 - GFF392 0.26 -1.6
382,947 - GFF392 0.26 -0.2
382,952 - GFF392 0.27 -0.9
382,952 - GFF392 0.27 -0.1
382,958 + GFF392 0.28 -0.3
382,968 + GFF392 0.29 -1.4
382,971 - GFF392 0.30 -0.3
382,986 - GFF392 0.32 -1.7
382,997 + GFF392 0.33 -2.7
383,001 - GFF392 0.33 +0.2
383,005 - GFF392 0.34 +0.7
383,028 + GFF392 0.37 -1.1
383,028 + GFF392 0.37 -2.5
383,036 - GFF392 0.38 -0.8
383,075 - GFF392 0.43 -2.4
383,076 + GFF392 0.43 +0.2
383,103 + GFF392 0.47 -0.7
383,103 + GFF392 0.47 -2.1
383,113 + GFF392 0.48 -1.4
383,116 - GFF392 0.48 -1.7
383,156 - GFF392 0.54 +1.4
383,156 - GFF392 0.54 -0.2
383,170 + GFF392 0.55 +1.3
383,187 + GFF392 0.58 -1.6
383,187 + GFF392 0.58 -1.6
383,246 + GFF392 0.65 +0.6
383,247 + GFF392 0.65 +0.5
383,274 + GFF392 0.69 -0.9
383,282 - GFF392 0.70 -0.4
383,325 - GFF392 0.76 +0.8

Or see this region's nucleotide sequence