Strain Fitness in Sphingobium sp. HT1-2 around GFF1329

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,356,156	+		GFF1327	0.66	+1.1
1,356,156	+		GFF1327	0.66	-0.1
1,356,164	-		GFF1327	0.66	+0.8
1,356,184	+		GFF1327	0.68	+0.0
1,356,185	-		GFF1327	0.68	-0.2
1,356,192	-		GFF1327	0.68	-0.6
1,356,192	-		GFF1327	0.68	+0.0
1,356,192	-		GFF1327	0.68	-1.1
1,356,202	+		GFF1327	0.69	-1.6
1,356,209	+		GFF1327	0.70	-1.0
1,356,221	+		GFF1327	0.71	-0.4
1,356,221	+		GFF1327	0.71	-1.5
1,356,221	+		GFF1327	0.71	-0.4
1,356,221	+		GFF1327	0.71	+0.1
1,356,221	+		GFF1327	0.71	-0.7
1,356,226	+		GFF1327	0.71	+0.8
1,356,226	+		GFF1327	0.71	+0.1
1,356,227	-		GFF1327	0.71	-0.8
1,356,229	-		GFF1327	0.71	-0.8
1,356,229	-		GFF1327	0.71	-0.2
1,356,231	+		GFF1327	0.71	-1.3
1,356,231	+		GFF1327	0.71	+0.1
1,356,234	-		GFF1327	0.71	-1.1
1,356,234	-		GFF1327	0.71	+0.4
1,356,234	-		GFF1327	0.71	-1.1
1,356,234	-		GFF1327	0.71	+1.7
1,356,239	-		GFF1327	0.72	-1.7
1,356,243	+		GFF1327	0.72	+0.3
1,356,243	+		GFF1327	0.72	+0.6
1,356,243	+		GFF1327	0.72	-0.9
1,356,243	+		GFF1327	0.72	+0.8
1,356,243	+		GFF1327	0.72	-0.3
1,356,243	+		GFF1327	0.72	-0.5
1,356,243	+		GFF1327	0.72	-1.7
1,356,243	+		GFF1327	0.72	-1.1
1,356,243	+		GFF1327	0.72	+0.8
1,356,243	+		GFF1327	0.72	+1.0
1,356,243	+		GFF1327	0.72	-2.0
1,356,243	+		GFF1327	0.72	-1.2
1,356,243	+		GFF1327	0.72	-0.2
1,356,243	+		GFF1327	0.72	-1.4
1,356,243	+		GFF1327	0.72	-0.8
1,356,243	+		GFF1327	0.72	-2.9
1,356,243	+		GFF1327	0.72	-0.4
1,356,251	-		GFF1327	0.73	-0.8
1,356,251	-		GFF1327	0.73	+0.0
1,356,251	-		GFF1327	0.73	-1.9
1,356,251	-		GFF1327	0.73	+1.4
1,356,251	-		GFF1327	0.73	-0.5
1,356,251	-		GFF1327	0.73	-1.2
1,356,251	-		GFF1327	0.73	-0.7
1,356,251	-		GFF1327	0.73	-0.9
1,356,251	-		GFF1327	0.73	-0.2
1,356,251	-		GFF1327	0.73	+0.8
1,356,251	-		GFF1327	0.73	+0.3
1,356,251	-		GFF1327	0.73	+1.2
1,356,251	-		GFF1327	0.73	+0.1
1,356,251	-		GFF1327	0.73	+0.0
1,356,251	-		GFF1327	0.73	+0.5
1,356,251	-		GFF1327	0.73	+0.2
1,356,251	-		GFF1327	0.73	-1.4
1,356,256	+		GFF1327	0.73	-0.2
1,356,258	+		GFF1327	0.73	-0.2
1,356,259	-		GFF1327	0.73	+0.7
1,356,262	-		GFF1327	0.74	+0.2
1,356,293	-		GFF1327	0.76	-0.7
1,356,300	+		GFF1327	0.76	-0.2
1,356,300	-		GFF1327	0.76	+0.5
1,356,311	+		GFF1327	0.77	-0.1
1,356,315	+		GFF1327	0.77	-2.1
1,356,315	+		GFF1327	0.77	+0.4
1,356,315	+		GFF1327	0.77	-1.1
1,356,315	+		GFF1327	0.77	+0.8
1,356,323	-		GFF1327	0.78	+0.4
1,356,323	-		GFF1327	0.78	-1.8
1,356,323	-		GFF1327	0.78	-1.4
1,356,323	-		GFF1327	0.78	-2.5
1,356,323	-		GFF1327	0.78	-1.4
1,356,323	-		GFF1327	0.78	-1.5
1,356,323	-		GFF1327	0.78	+0.8
1,356,371	-		GFF1327	0.81	-0.4
1,356,373	+		GFF1327	0.82	+0.1
1,356,373	+		GFF1327	0.82	-0.9
1,356,373	+		GFF1327	0.82	+0.1
1,356,378	+		GFF1327	0.82	+0.7
1,356,378	+		GFF1327	0.82	-0.2
1,356,378	+		GFF1327	0.82	+0.3
1,356,378	+		GFF1327	0.82	-0.2
1,356,378	+		GFF1327	0.82	+0.4
1,356,378	+		GFF1327	0.82	+0.1
1,356,378	+		GFF1327	0.82	-0.7
1,356,378	+		GFF1327	0.82	-0.0
1,356,378	+		GFF1327	0.82	-1.2
1,356,379	+		GFF1327	0.82	+0.8
1,356,386	-		GFF1327	0.83	+0.4
1,356,386	-		GFF1327	0.83	-0.6
1,356,386	-		GFF1327	0.83	+1.3
1,356,386	-		GFF1327	0.83	+0.3
1,356,386	-		GFF1327	0.83	+0.1
1,356,386	-		GFF1327	0.83	+1.8
1,356,386	-		GFF1327	0.83	+1.1
1,356,386	-		GFF1327	0.83	+1.3
1,356,387	-		GFF1327	0.83	-1.7
1,356,387	-		GFF1327	0.83	+0.0
1,356,412	+		GFF1327	0.84	-1.5
1,356,414	-		GFF1327	0.85	-0.4
1,356,421	+		GFF1327	0.85	-0.1
1,356,430	-		GFF1327	0.86	-0.7
1,356,434	+		GFF1327	0.86	-1.7
1,356,490	+				-0.5
1,356,503	-				+1.5
1,356,511	-				-0.7
1,356,532	+				-1.0
1,356,547	-				-0.4
1,356,571	+				+0.3
1,356,595	+				-1.3
1,356,608	-				+0.6
1,356,610	+				-2.4
1,356,621	+				-0.4
1,356,622	+				+0.8
1,356,647	-				-1.1
1,356,654	+				+1.5
1,356,654	+				-1.1
1,356,654	+				-0.2
1,356,662	-		GFF1328	0.13	-1.0
1,356,676	+		GFF1328	0.22	-0.1
1,356,676	+		GFF1328	0.22	-0.1
1,356,684	-		GFF1328	0.27	-2.3
1,356,684	-		GFF1328	0.27	-0.4
1,356,691	-		GFF1328	0.31	+0.6
1,356,720	+		GFF1328	0.49	-0.5
1,356,724	+		GFF1328	0.51	-0.8
1,356,733	+		GFF1328	0.57	-1.4
1,356,734	+		GFF1328	0.57	-0.4
1,356,742	-		GFF1328	0.62	-1.3
1,356,746	-		GFF1328	0.65	+0.4
1,356,764	-		GFF1328	0.76	-0.4
1,356,764	-		GFF1328	0.76	-1.3
1,356,764	-		GFF1328	0.76	+0.7
1,356,764	-		GFF1328	0.76	-0.4
1,356,764	-		GFF1328	0.76	+0.2
1,356,764	-		GFF1328	0.76	-1.4
1,356,766	+		GFF1328	0.77	+0.0
1,356,777	+		GFF1328	0.84	-0.0
1,356,778	+		GFF1328	0.85	-0.1
1,356,778	+		GFF1328	0.85	-0.7
1,356,778	+		GFF1328	0.85	-1.4
1,356,778	+		GFF1328	0.85	+0.8
1,356,778	+		GFF1328	0.85	-0.8
1,356,783	+		GFF1328	0.88	+0.1
1,356,783	+		GFF1328	0.88	-1.7
1,356,783	+		GFF1328	0.88	-1.0
1,356,783	+		GFF1328	0.88	-0.1
1,356,785	+		GFF1328	0.89	-1.4
1,356,786	-				-1.1
1,356,786	-				+0.2
1,356,786	-				-0.2
1,356,786	-				+0.3
1,356,786	-				-1.3
1,356,791	-				-0.1
1,356,804	-				-0.5
1,356,826	+				-0.4
1,356,831	+				-0.6
1,356,831	+				-1.1
1,356,834	-				-1.8
1,356,834	-				-0.7
1,356,834	-				-0.5
1,356,834	-				-0.5
1,356,839	-				-1.9
1,356,839	-				+0.8
1,356,839	-				-0.4
1,356,850	+				+0.5
1,356,872	+				+0.2
1,356,880	-				+0.0
1,356,888	+				-0.2
1,356,888	+				-0.2
1,356,888	+				+0.5
1,356,896	-				+0.9
1,356,896	-				+0.6
1,356,896	-				-1.6
1,356,896	-				-0.1
1,356,936	+				+1.6
1,356,943	-				-0.5
1,356,949	-				-0.8
1,357,002	-				+0.5
1,357,011	-				-1.3
1,357,019	+				-2.5
1,357,028	-				-1.1
1,357,059	-				+0.3
1,357,075	-				-1.1
1,357,084	+				-1.5
1,357,084	+				-1.4
1,357,085	+				+0.1
1,357,092	-				-0.4
1,357,093	-				-0.7
1,357,093	-				+0.8
1,357,136	-				-0.5
1,357,136	-				-1.8
1,357,151	+				-0.2
1,357,151	+				-1.1
1,357,151	+				+1.1
1,357,151	+				+0.3
1,357,151	+				-1.5
1,357,151	+				-1.2
1,357,151	+				+0.2
1,357,153	+				-0.5
1,357,159	-		GFF1329	0.11	-0.4
1,357,159	-		GFF1329	0.11	-0.1
1,357,159	-		GFF1329	0.11	-0.1
1,357,159	-		GFF1329	0.11	-0.6
1,357,159	-		GFF1329	0.11	+1.3
1,357,161	+		GFF1329	0.14	-0.2
1,357,161	+		GFF1329	0.14	+0.5
1,357,161	+		GFF1329	0.14	+0.1
1,357,161	+		GFF1329	0.14	-0.2
1,357,161	-		GFF1329	0.14	-1.1
1,357,161	-		GFF1329	0.14	-0.7
1,357,169	-		GFF1329	0.22	-0.0
1,357,169	-		GFF1329	0.22	+0.5
1,357,169	-		GFF1329	0.22	+1.4
1,357,169	-		GFF1329	0.22	+0.3
1,357,169	-		GFF1329	0.22	-0.7
1,357,169	-		GFF1329	0.22	+0.1
1,357,174	+		GFF1329	0.27	-1.0
1,357,179	+		GFF1329	0.32	-1.6
1,357,195	+		GFF1329	0.49	-0.2
1,357,195	+		GFF1329	0.49	-1.5
1,357,195	+		GFF1329	0.49	-0.7
1,357,198	-		GFF1329	0.52	-0.6
1,357,203	-		GFF1329	0.57	-2.1
1,357,203	-		GFF1329	0.57	-0.5
1,357,203	-		GFF1329	0.57	+0.0
1,357,203	-		GFF1329	0.57	-0.9
1,357,210	+		GFF1329	0.65	+1.3
1,357,210	+		GFF1329	0.65	-0.7
1,357,210	+		GFF1329	0.65	+0.2
1,357,210	+		GFF1329	0.65	-1.6
1,357,210	+		GFF1329	0.65	-1.6
1,357,218	-		GFF1329	0.73	-0.8
1,357,218	-		GFF1329	0.73	-1.3
1,357,218	-		GFF1329	0.73	+0.5
1,357,218	-		GFF1329	0.73	+0.2
1,357,218	-		GFF1329	0.73	-0.4
1,357,218	-		GFF1329	0.73	+0.6
1,357,218	-		GFF1329	0.73	-0.2
1,357,218	-		GFF1329	0.73	-0.8
1,357,220	+		GFF1329	0.75	-0.4
1,357,220	+		GFF1329	0.75	+0.9
1,357,227	+		GFF1329	0.82	-1.2
1,357,228	-		GFF1329	0.83	+0.4
1,357,228	-		GFF1329	0.83	-0.5
1,357,266	+				-1.4
1,357,269	-				-0.2
1,357,274	-				+0.9
1,357,277	+				-1.7
1,357,277	+				-1.6
1,357,277	+				+2.2
1,357,280	-				-2.5
1,357,285	-				-0.1
1,357,285	-				+1.2
1,357,285	-				+0.3
1,357,285	-				+0.3
1,357,290	-				+0.2
1,357,295	-				+2.1
1,357,315	+				+0.5
1,357,316	+				+0.8
1,357,316	+				+0.4
1,357,316	+				+0.3
1,357,316	+				+1.2
1,357,316	+				-0.1
1,357,316	+				+0.9
1,357,316	+				-1.4
1,357,316	+				+0.0
1,357,318	-				-0.1
1,357,321	+				-1.1
1,357,321	+				-1.2
1,357,321	+				+0.8
1,357,324	-				+0.1
1,357,324	-				-1.0
1,357,329	+				+1.7
1,357,329	-				-0.5
1,357,338	+				-1.1
1,357,338	+				-2.6
1,357,338	+				-2.1
1,357,339	+				-0.1
1,357,343	+				+2.1
1,357,346	-				+0.9
1,357,348	+				-1.7
1,357,348	+				+0.7
1,357,348	+				+0.4
1,357,356	-				+1.3
1,357,356	-				+1.3
1,357,356	-				+0.4
1,357,356	-				-0.5
1,357,356	-				+0.8
1,357,373	-				-0.2
1,357,373	-				-0.4
1,357,378	-		GFF1330	0.10	-0.4
1,357,381	+		GFF1330	0.10	-0.5
1,357,382	+		GFF1330	0.10	+1.2
1,357,382	+		GFF1330	0.10	-0.1
1,357,382	+		GFF1330	0.10	+0.0
1,357,390	-		GFF1330	0.11	+1.0
1,357,390	-		GFF1330	0.11	-1.9
1,357,395	+		GFF1330	0.11	-0.1
1,357,395	+		GFF1330	0.11	+0.4
1,357,403	+		GFF1330	0.12	+0.0
1,357,411	-		GFF1330	0.13	-1.1
1,357,413	-		GFF1330	0.13	+0.3
1,357,415	+		GFF1330	0.13	-0.4
1,357,434	+		GFF1330	0.14	+0.2
1,357,434	+		GFF1330	0.14	-0.7
1,357,434	+		GFF1330	0.14	-0.6
1,357,434	+		GFF1330	0.14	-2.5
1,357,434	+		GFF1330	0.14	+0.8
1,357,436	+		GFF1330	0.14	+0.8
1,357,436	+		GFF1330	0.14	-0.7
1,357,442	-		GFF1330	0.15	-0.1
1,357,442	-		GFF1330	0.15	-0.6
1,357,442	-		GFF1330	0.15	-1.5
1,357,442	-		GFF1330	0.15	-0.4
1,357,442	-		GFF1330	0.15	+1.5
1,357,442	-		GFF1330	0.15	-0.2
1,357,444	-		GFF1330	0.15	+1.0
1,357,444	-		GFF1330	0.15	+0.5
1,357,444	-		GFF1330	0.15	-0.7
1,357,453	+		GFF1330	0.16	+0.5
1,357,458	+		GFF1330	0.16	-0.9
1,357,461	-		GFF1330	0.16	-0.3
1,357,461	-		GFF1330	0.16	-1.2
1,357,472	+		GFF1330	0.17	-0.5
1,357,472	+		GFF1330	0.17	-0.2
1,357,472	+		GFF1330	0.17	-1.1
1,357,486	+		GFF1330	0.18	-1.2
1,357,487	+		GFF1330	0.18	+1.0
1,357,487	+		GFF1330	0.18	-2.2
1,357,487	+		GFF1330	0.18	-0.6
1,357,487	+		GFF1330	0.18	-0.3
1,357,491	+		GFF1330	0.19	+0.8
1,357,495	-		GFF1330	0.19	+0.1
1,357,495	-		GFF1330	0.19	+0.3
1,357,502	+		GFF1330	0.19	-0.1
1,357,505	-		GFF1330	0.20	+0.0
1,357,510	-		GFF1330	0.20	-2.4
1,357,510	-		GFF1330	0.20	-1.2
1,357,520	+		GFF1330	0.21	+0.2
1,357,524	+		GFF1330	0.21	-2.8
1,357,524	+		GFF1330	0.21	-1.1
1,357,524	+		GFF1330	0.21	+0.9
1,357,524	+		GFF1330	0.21	+1.2
1,357,524	+		GFF1330	0.21	+0.5
1,357,524	+		GFF1330	0.21	-0.9
1,357,525	+		GFF1330	0.21	+1.1
1,357,532	+		GFF1330	0.22	-0.8
1,357,532	+		GFF1330	0.22	-1.5
1,357,532	-		GFF1330	0.22	+0.2
1,357,532	-		GFF1330	0.22	+0.2
1,357,532	-		GFF1330	0.22	-0.2
1,357,532	-		GFF1330	0.22	+0.7
1,357,532	-		GFF1330	0.22	+0.5
1,357,532	-		GFF1330	0.22	-2.2
1,357,532	-		GFF1330	0.22	+0.2
1,357,532	-		GFF1330	0.22	+0.4
1,357,532	-		GFF1330	0.22	-1.1
1,357,534	+		GFF1330	0.22	-0.0
1,357,540	-		GFF1330	0.22	+0.6
1,357,540	-		GFF1330	0.22	+0.3
1,357,547	+		GFF1330	0.23	-0.2
1,357,550	-		GFF1330	0.23	-0.1
1,357,550	-		GFF1330	0.23	+0.3
1,357,560	-		GFF1330	0.24	-0.2
1,357,565	-		GFF1330	0.24	-0.4
1,357,565	-		GFF1330	0.24	-1.5
1,357,576	-		GFF1330	0.25	-1.1
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