Strain Fitness in Sphingobium sp. HT1-2 around GFF1133

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,136,855	+				-0.7
1,136,855	+				-1.1
1,136,860	+				-0.6
1,136,863	-				-0.4
1,136,863	-				-0.2
1,136,863	-				+0.2
1,136,863	-				-2.3
1,136,865	+				-0.5
1,136,873	-				-0.7
1,136,881	+				-0.2
1,136,899	+				+0.6
1,136,907	-				-1.2
1,136,907	-				-0.8
1,136,927	+				+0.8
1,136,929	+				+1.0
1,136,929	+				-0.2
1,136,935	-				+0.4
1,136,943	-				+1.7
1,136,965	-				-0.6
1,136,990	+				+0.4
1,136,995	+				-0.1
1,137,000	+				-2.5
1,137,000	+				-0.1
1,137,000	+				+0.3
1,137,003	-				-1.4
1,137,003	-				+0.1
1,137,005	+				-1.0
1,137,005	+				+0.0
1,137,006	+				-0.5
1,137,008	-				+0.2
1,137,008	-				+0.5
1,137,008	-				-1.0
1,137,013	-				-0.9
1,137,014	-				-0.3
1,137,023	+				+0.7
1,137,023	+				-0.2
1,137,023	+				-0.6
1,137,023	+				+1.0
1,137,023	+				-0.2
1,137,023	+				+0.1
1,137,023	+				-2.0
1,137,023	+				-1.1
1,137,031	-				-0.3
1,137,031	-				+0.1
1,137,031	-				+0.0
1,137,031	-				-0.7
1,137,031	-				+0.5
1,137,031	-				+1.0
1,137,031	-				+0.4
1,137,031	-				-1.6
1,137,031	-				-0.2
1,137,054	+				-2.6
1,137,064	-				-0.7
1,137,074	+				+0.4
1,137,078	+				-1.2
1,137,078	+				-1.8
1,137,086	-				+0.1
1,137,113	-		GFF1132	0.12	-1.0
1,137,113	-		GFF1132	0.12	-0.5
1,137,115	+		GFF1132	0.13	+0.1
1,137,117	+		GFF1132	0.13	-1.5
1,137,152	+		GFF1132	0.17	+0.2
1,137,162	-		GFF1132	0.19	-1.1
1,137,166	-		GFF1132	0.19	+0.6
1,137,167	-		GFF1132	0.19	-0.4
1,137,167	-		GFF1132	0.19	+0.7
1,137,168	+		GFF1132	0.19	+0.5
1,137,169	+		GFF1132	0.19	-0.4
1,137,169	+		GFF1132	0.19	-1.2
1,137,169	+		GFF1132	0.19	-1.6
1,137,169	+		GFF1132	0.19	-0.3
1,137,170	+		GFF1132	0.20	+0.5
1,137,170	+		GFF1132	0.20	+0.0
1,137,170	+		GFF1132	0.20	+0.4
1,137,173	+		GFF1132	0.20	-1.1
1,137,176	-		GFF1132	0.20	-1.1
1,137,177	-		GFF1132	0.20	-0.7
1,137,177	-		GFF1132	0.20	-0.2
1,137,177	-		GFF1132	0.20	-1.4
1,137,177	-		GFF1132	0.20	-0.3
1,137,177	-		GFF1132	0.20	+0.4
1,137,177	-		GFF1132	0.20	-1.2
1,137,177	-		GFF1132	0.20	-0.1
1,137,177	-		GFF1132	0.20	-0.7
1,137,179	+		GFF1132	0.21	+0.5
1,137,239	+		GFF1132	0.28	+1.1
1,137,247	-		GFF1132	0.29	-1.3
1,137,248	-		GFF1132	0.30	-0.9
1,137,252	+		GFF1132	0.30	-1.2
1,137,284	+		GFF1132	0.34	+0.1
1,137,307	+		GFF1132	0.37	+1.0
1,137,307	+		GFF1132	0.37	-0.8
1,137,307	+		GFF1132	0.37	-0.8
1,137,307	+		GFF1132	0.37	-1.0
1,137,307	+		GFF1132	0.37	-0.5
1,137,315	-		GFF1132	0.38	+0.2
1,137,315	-		GFF1132	0.38	-0.4
1,137,315	-		GFF1132	0.38	+0.7
1,137,335	+		GFF1132	0.41	+0.4
1,137,353	-		GFF1132	0.43	+0.2
1,137,393	+		GFF1132	0.48	-0.7
1,137,401	+		GFF1132	0.49	+0.3
1,137,406	-		GFF1132	0.50	-0.4
1,137,409	-		GFF1132	0.50	-0.5
1,137,439	+		GFF1132	0.54	-1.5
1,137,439	+		GFF1132	0.54	-0.5
1,137,454	+		GFF1132	0.56	+0.1
1,137,457	-		GFF1132	0.56	+0.6
1,137,462	-		GFF1132	0.57	+1.0
1,137,462	-		GFF1132	0.57	-0.5
1,137,475	+		GFF1132	0.58	-0.2
1,137,488	-		GFF1132	0.60	-1.6
1,137,504	+		GFF1132	0.62	-0.3
1,137,520	+		GFF1132	0.64	-0.8
1,137,522	+		GFF1132	0.64	-1.1
1,137,528	-		GFF1132	0.65	-0.2
1,137,537	+		GFF1132	0.66	+0.8
1,137,537	+		GFF1132	0.66	+0.1
1,137,537	+		GFF1132	0.66	-0.1
1,137,539	+		GFF1132	0.67	+0.4
1,137,540	-		GFF1132	0.67	+1.1
1,137,542	+		GFF1132	0.67	-0.3
1,137,545	+		GFF1132	0.67	-0.3
1,137,547	-		GFF1132	0.68	+0.2
1,137,550	+		GFF1132	0.68	-1.3
1,137,550	+		GFF1132	0.68	-0.2
1,137,550	+		GFF1132	0.68	+1.6
1,137,550	+		GFF1132	0.68	-0.7
1,137,553	-		GFF1132	0.68	-0.8
1,137,555	+		GFF1132	0.69	-0.3
1,137,558	-		GFF1132	0.69	-0.5
1,137,558	-		GFF1132	0.69	+2.2
1,137,590	+		GFF1132	0.73	-0.1
1,137,597	+		GFF1132	0.74	-0.2
1,137,616	+		GFF1132	0.76	-0.8
1,137,622	+		GFF1132	0.77	-1.5
1,137,627	+		GFF1132	0.78	+0.3
1,137,627	-		GFF1132	0.78	-0.4
1,137,627	-		GFF1132	0.78	+0.1
1,137,635	-		GFF1132	0.79	-2.1
1,137,658	+		GFF1132	0.82	-1.9
1,137,658	+		GFF1132	0.82	+0.1
1,137,671	-		GFF1132	0.83	-0.5
1,137,671	-		GFF1132	0.83	-1.5
1,137,677	-		GFF1132	0.84	-0.6
1,137,686	+		GFF1132	0.85	+0.2
1,137,686	+		GFF1132	0.85	+0.1
1,137,686	+		GFF1132	0.85	-2.4
1,137,686	+		GFF1132	0.85	-0.7
1,137,686	+		GFF1132	0.85	+0.5
1,137,694	-		GFF1132	0.86	-0.6
1,137,706	-		GFF1132	0.88	-0.9
1,137,706	-		GFF1132	0.88	-1.1
1,137,708	+		GFF1132	0.88	-1.6
1,137,708	+		GFF1132	0.88	-0.9
1,137,710	+		GFF1132	0.88	+0.0
1,137,721	+		GFF1132	0.90	-0.2
1,137,721	+		GFF1132	0.90	+0.0
1,137,721	+		GFF1132	0.90	+0.5
1,137,728	+				+0.1
1,137,729	-				+0.7
1,137,738	+				-0.6
1,137,751	+				-1.6
1,137,751	+				-0.3
1,137,751	+				+0.1
1,137,751	+				+0.1
1,137,751	+				-1.2
1,137,751	+				-0.6
1,137,751	+				-1.3
1,137,751	+				-0.4
1,137,751	+				+0.6
1,137,751	+				-0.3
1,137,751	+				+0.3
1,137,751	+				-0.3
1,137,751	+				-0.2
1,137,751	+				-1.5
1,137,751	+				+0.1
1,137,751	+				+0.8
1,137,751	+				-0.1
1,137,751	+				-1.1
1,137,751	+				+0.2
1,137,751	+				-1.8
1,137,751	+				+0.1
1,137,751	+				-1.1
1,137,751	+				+0.8
1,137,751	+				+0.3
1,137,751	+				-0.2
1,137,751	+				+0.4
1,137,751	+				-0.3
1,137,754	-				-0.1
1,137,759	-				-1.5
1,137,759	-				-0.1
1,137,759	-				-1.1
1,137,759	-				+1.2
1,137,759	-				-1.5
1,137,759	-				-1.4
1,137,759	-				-0.4
1,137,759	-				-0.3
1,137,759	-				-0.6
1,137,759	-				+0.7
1,137,759	-				+0.4
1,137,759	-				-3.0
1,137,759	-				+0.4
1,137,759	-				-0.3
1,137,759	-				-0.2
1,137,759	-				-1.6
1,137,759	-				-0.5
1,137,759	-				-0.3
1,137,759	-				+0.7
1,137,759	-				+0.8
1,137,759	-				+0.5
1,137,759	-				+0.5
1,137,759	-				-1.3
1,137,759	-				+0.3
1,137,759	-				-0.2
1,137,759	-				+1.5
1,137,759	-				-0.1
1,137,759	-				-0.3
1,137,759	-				-1.2
1,137,759	-				-1.2
1,137,759	-				+0.5
1,137,759	-				+0.1
1,137,759	-				+0.6
1,137,759	-				-0.4
1,137,759	-				+0.5
1,137,759	-				+0.1
1,137,759	-				+0.2
1,137,759	-				+0.1
1,137,759	-				+0.1
1,137,759	-				-2.5
1,137,759	-				+0.6
1,137,764	-				+0.7
1,137,780	+				+0.4
1,137,804	-				-0.1
1,137,866	-				-0.7
1,137,876	-				-0.6
1,137,876	-				+0.3
1,137,881	-				-1.8
1,137,898	+				+0.4
1,137,898	+				+0.6
1,137,898	+				-1.3
1,137,898	+				+0.3
1,137,898	+				-0.2
1,137,898	+				-0.6
1,137,898	+				+0.3
1,137,898	+				-1.2
1,137,898	+				-1.7
1,137,898	+				+0.8
1,137,898	+				+0.3
1,137,898	+				-1.6
1,137,898	+				-0.1
1,137,906	-				-0.8
1,137,906	-				-2.1
1,137,906	-				+0.5
1,137,906	-				-1.4
1,137,906	-				-2.4
1,137,906	-				+0.1
1,137,906	-				+0.0
1,137,906	-				-2.0
1,137,906	-				-0.8
1,137,906	-				-0.1
1,137,906	-				-0.7
1,137,906	-				-0.7
1,137,906	-				+0.3
1,137,916	-				-1.7
1,137,916	-				+0.8
1,137,918	+				-2.4
1,137,930	+				-1.7
1,137,937	-		GFF1133	0.10	-1.4
1,137,937	-		GFF1133	0.10	-0.4
1,137,937	-		GFF1133	0.10	-1.9
1,137,973	+		GFF1133	0.14	+0.3
1,138,011	+		GFF1133	0.17	+1.7
1,138,014	-		GFF1133	0.17	-0.9
1,138,032	-		GFF1133	0.19	+0.8
1,138,041	+		GFF1133	0.20	-0.2
1,138,041	+		GFF1133	0.20	-2.5
1,138,041	+		GFF1133	0.20	-0.3
1,138,041	+		GFF1133	0.20	-1.9
1,138,049	-		GFF1133	0.20	-0.2
1,138,049	-		GFF1133	0.20	-0.5
1,138,049	-		GFF1133	0.20	+0.4
1,138,107	+		GFF1133	0.26	-0.1
1,138,120	+		GFF1133	0.27	+0.9
1,138,125	+		GFF1133	0.27	-0.1
1,138,125	+		GFF1133	0.27	-0.9
1,138,125	+		GFF1133	0.27	-2.3
1,138,125	+		GFF1133	0.27	+0.3
1,138,125	+		GFF1133	0.27	-1.3
1,138,125	+		GFF1133	0.27	+0.0
1,138,125	+		GFF1133	0.27	-0.9
1,138,125	+		GFF1133	0.27	-0.9
1,138,125	+		GFF1133	0.27	+1.3
1,138,125	+		GFF1133	0.27	-0.7
1,138,125	+		GFF1133	0.27	-0.2
1,138,125	+		GFF1133	0.27	-0.6
1,138,125	+		GFF1133	0.27	+0.3
1,138,128	-		GFF1133	0.27	+1.3
1,138,128	-		GFF1133	0.27	+0.4
1,138,132	+		GFF1133	0.28	-0.7
1,138,132	+		GFF1133	0.28	+0.7
1,138,133	-		GFF1133	0.28	+0.5
1,138,133	-		GFF1133	0.28	+0.3
1,138,133	-		GFF1133	0.28	-1.1
1,138,133	-		GFF1133	0.28	-0.5
1,138,133	-		GFF1133	0.28	-1.2
1,138,133	-		GFF1133	0.28	-1.1
1,138,133	-		GFF1133	0.28	-0.5
1,138,133	-		GFF1133	0.28	-1.2
1,138,133	-		GFF1133	0.28	+0.7
1,138,133	-		GFF1133	0.28	+0.3
1,138,133	-		GFF1133	0.28	+1.0
1,138,133	-		GFF1133	0.28	-0.0
1,138,133	-		GFF1133	0.28	+0.0
1,138,133	-		GFF1133	0.28	+0.1
1,138,133	-		GFF1133	0.28	-1.9
1,138,133	-		GFF1133	0.28	-2.5
1,138,133	-		GFF1133	0.28	-0.2
1,138,133	-		GFF1133	0.28	+0.5
1,138,133	-		GFF1133	0.28	-0.8
1,138,133	-		GFF1133	0.28	-0.2
1,138,133	-		GFF1133	0.28	-0.3
1,138,133	-		GFF1133	0.28	-1.3
1,138,137	+		GFF1133	0.28	+0.5
1,138,137	+		GFF1133	0.28	+1.1
1,138,142	+		GFF1133	0.29	-1.1
1,138,142	+		GFF1133	0.29	+0.1
1,138,142	+		GFF1133	0.29	-1.6
1,138,142	+		GFF1133	0.29	+0.0
1,138,150	-		GFF1133	0.29	+0.1
1,138,150	-		GFF1133	0.29	-0.9
1,138,150	-		GFF1133	0.29	-0.1
1,138,150	-		GFF1133	0.29	-0.3
1,138,155	+		GFF1133	0.30	-0.9
1,138,185	+		GFF1133	0.33	+0.7
1,138,219	+		GFF1133	0.36	-0.4
1,138,234	+		GFF1133	0.37	-1.0
1,138,244	-		GFF1133	0.38	+0.4
1,138,261	+		GFF1133	0.39	+0.4
1,138,267	-		GFF1133	0.40	-0.4
1,138,267	-		GFF1133	0.40	-0.9
1,138,278	+		GFF1133	0.41	-0.2
1,138,278	+		GFF1133	0.41	+0.2
1,138,278	+		GFF1133	0.41	-0.9
1,138,278	+		GFF1133	0.41	-2.0
1,138,278	+		GFF1133	0.41	-0.7
1,138,278	+		GFF1133	0.41	-1.3
1,138,286	-		GFF1133	0.42	+1.1
1,138,286	-		GFF1133	0.42	-1.3
1,138,286	-		GFF1133	0.42	+0.8
1,138,286	-		GFF1133	0.42	-0.1
1,138,286	-		GFF1133	0.42	-0.7
1,138,286	-		GFF1133	0.42	-0.1
1,138,286	-		GFF1133	0.42	-0.0
1,138,286	-		GFF1133	0.42	+0.8
1,138,286	-		GFF1133	0.42	+0.1
1,138,287	+		GFF1133	0.42	+1.1
1,138,291	-		GFF1133	0.42	+0.4
1,138,295	+		GFF1133	0.42	-0.5
1,138,307	-		GFF1133	0.43	+0.1
1,138,310	+		GFF1133	0.44	-0.2
1,138,324	+		GFF1133	0.45	-1.9
1,138,324	+		GFF1133	0.45	-2.0
1,138,324	+		GFF1133	0.45	+0.0
1,138,324	+		GFF1133	0.45	-0.5
1,138,324	+		GFF1133	0.45	+0.1
1,138,324	+		GFF1133	0.45	-1.2
1,138,325	+		GFF1133	0.45	-1.1
1,138,332	-		GFF1133	0.46	+0.3
1,138,332	-		GFF1133	0.46	-2.9
1,138,333	-		GFF1133	0.46	-2.6
1,138,341	+		GFF1133	0.47	-0.6
1,138,376	+		GFF1133	0.50	+1.1
1,138,376	+		GFF1133	0.50	+0.2
1,138,376	+		GFF1133	0.50	-1.2
1,138,376	+		GFF1133	0.50	-0.4
1,138,378	+		GFF1133	0.50	-0.2
1,138,378	+		GFF1133	0.50	-0.8
1,138,378	+		GFF1133	0.50	-0.3
1,138,378	+		GFF1133	0.50	-0.1
1,138,378	+		GFF1133	0.50	-0.5
1,138,378	+		GFF1133	0.50	-2.5
1,138,384	-		GFF1133	0.50	-0.6
1,138,384	-		GFF1133	0.50	-0.7
1,138,384	-		GFF1133	0.50	-0.7
1,138,384	-		GFF1133	0.50	-0.2
1,138,384	-		GFF1133	0.50	+0.2
1,138,384	-		GFF1133	0.50	+0.3
1,138,384	-		GFF1133	0.50	-1.9
1,138,386	-		GFF1133	0.51	+0.7
1,138,386	-		GFF1133	0.51	-1.6
1,138,390	+		GFF1133	0.51	-1.6
1,138,392	-		GFF1133	0.51	-1.2
1,138,401	-		GFF1133	0.52	+0.5
1,138,415	+		GFF1133	0.53	-0.6
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1,138,835	+				-1.8
1,138,835	+				-0.4
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1,138,835	+				-2.1
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1,138,843	-				-0.9
1,138,843	-				+0.3
1,138,843	-				+0.2
1,138,857	-				-1.4
1,138,905	+				-1.3
1,138,905	+				-1.6
1,138,905	+				+0.8
1,138,910	+				-1.2
1,138,910	+				+0.9
1,138,912	+				-0.7
1,138,913	-				-1.9
1,138,924	+				-0.2
1,138,932	+				-0.6
1,138,932	+				+0.8
1,138,934	+				+0.6
1,138,984	+				+1.7
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1,139,127	-				-2.0
1,139,161	-				-1.1
1,139,163	+				+0.1
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1,139,281	+				-1.2
1,139,301	-				-2.3
1,139,301	-				+1.3
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1,139,303	-				+0.8
1,139,317	+				+0.5
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1,139,342	+				+0.7
1,139,348	-				-1.8
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