Strain Fitness in Sphingobium sp. HT1-2 around GFF2370

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,392,414	-		GFF2369	0.49	-2.6
2,392,431	+		GFF2369	0.50	+0.6
2,392,442	+		GFF2369	0.50	-1.7
2,392,442	+		GFF2369	0.50	-1.2
2,392,472	+		GFF2369	0.52	+0.4
2,392,494	-		GFF2369	0.53	-2.1
2,392,504	-		GFF2369	0.53	-1.6
2,392,520	+		GFF2369	0.54	-0.6
2,392,530	+		GFF2369	0.55	+0.6
2,392,530	+		GFF2369	0.55	-0.2
2,392,552	+		GFF2369	0.56	-1.6
2,392,560	-		GFF2369	0.56	-1.7
2,392,583	+		GFF2369	0.57	-2.2
2,392,600	-		GFF2369	0.58	-0.9
2,392,600	-		GFF2369	0.58	-1.7
2,392,695	+		GFF2369	0.63	+1.0
2,392,703	-		GFF2369	0.64	-3.1
2,392,703	-		GFF2369	0.64	-0.9
2,392,703	-		GFF2369	0.64	-2.7
2,392,703	-		GFF2369	0.64	-1.7
2,392,705	-		GFF2369	0.64	-2.1
2,392,749	+		GFF2369	0.66	-0.1
2,392,749	+		GFF2369	0.66	-1.6
2,392,757	-		GFF2369	0.66	-0.7
2,392,757	-		GFF2369	0.66	-3.3
2,392,770	+		GFF2369	0.67	-0.5
2,392,776	-		GFF2369	0.67	-1.8
2,392,778	-		GFF2369	0.67	-2.3
2,392,783	-		GFF2369	0.68	-2.3
2,392,794	+		GFF2369	0.68	-1.3
2,392,800	-		GFF2369	0.69	-2.4
2,392,848	-		GFF2369	0.71	-1.9
2,392,860	+		GFF2369	0.72	-1.6
2,392,870	-		GFF2369	0.72	-3.1
2,392,870	-		GFF2369	0.72	-2.1
2,392,926	+		GFF2369	0.75	-2.3
2,392,939	+		GFF2369	0.76	-2.7
2,392,939	+		GFF2369	0.76	-2.2
2,392,939	+		GFF2369	0.76	-0.2
2,392,940	-		GFF2369	0.76	-0.8
2,392,944	+		GFF2369	0.76	-3.0
2,392,947	-		GFF2369	0.76	-1.7
2,392,952	-		GFF2369	0.76	-2.8
2,392,953	+		GFF2369	0.76	+0.9
2,392,955	+		GFF2369	0.77	-3.1
2,392,957	-		GFF2369	0.77	-3.1
2,392,972	+		GFF2369	0.77	-0.2
2,392,972	+		GFF2369	0.77	-2.3
2,392,981	+		GFF2369	0.78	-1.7
2,392,984	+		GFF2369	0.78	-1.8
2,392,995	-		GFF2369	0.79	-0.3
2,393,021	-		GFF2369	0.80	-2.0
2,393,045	-		GFF2369	0.81	-2.1
2,393,048	+		GFF2369	0.81	-1.8
2,393,048	+		GFF2369	0.81	-0.3
2,393,048	+		GFF2369	0.81	-2.6
2,393,070	+		GFF2369	0.82	-0.5
2,393,070	+		GFF2369	0.82	+0.4
2,393,078	-		GFF2369	0.83	-0.6
2,393,078	-		GFF2369	0.83	-1.7
2,393,092	+		GFF2369	0.84	-2.5
2,393,100	-		GFF2369	0.84	-1.7
2,393,149	+		GFF2369	0.86	+0.4
2,393,157	-		GFF2369	0.87	-2.3
2,393,169	-		GFF2369	0.87	-1.6
2,393,198	+		GFF2369	0.89	-0.6
2,393,203	+		GFF2369	0.89	-2.5
2,393,226	+				+0.9
2,393,262	+				-1.6
2,393,262	+				-1.0
2,393,263	+				-1.3
2,393,318	-				-1.6
2,393,331	+				-2.4
2,393,331	+				-1.4
2,393,334	+				-0.2
2,393,338	+				-0.6
2,393,338	+				-0.3
2,393,339	-				-0.5
2,393,339	-				-3.3
2,393,339	-				-1.0
2,393,346	-				+0.4
2,393,346	-				-3.2
2,393,352	+				+1.2
2,393,352	+				-0.5
2,393,371	+				+0.3
2,393,415	-				-0.0
2,393,440	-				-2.7
2,393,447	+				-0.2
2,393,448	-				-1.4
2,393,468	+				-2.0
2,393,468	+				-2.8
2,393,468	+				-1.6
2,393,476	+				-1.6
2,393,476	-				-2.0
2,393,481	-				-3.3
2,393,483	+				-3.0
2,393,483	+				-2.9
2,393,483	+				-2.4
2,393,486	-				-2.5
2,393,491	-				-2.5
2,393,496	-				-1.7
2,393,524	+				-2.8
2,393,529	+				-1.3
2,393,534	+				-2.2
2,393,545	+				-2.7
2,393,545	+				-0.3
2,393,604	+		GFF2370	0.12	-2.0
2,393,605	-		GFF2370	0.13	-2.0
2,393,605	-		GFF2370	0.13	-2.3
2,393,625	-		GFF2370	0.14	-2.0
2,393,636	-		GFF2370	0.15	-1.5
2,393,662	+		GFF2370	0.16	-1.8
2,393,662	+		GFF2370	0.16	-2.8
2,393,670	-		GFF2370	0.17	-2.5
2,393,731	-		GFF2370	0.21	-2.5
2,393,765	+		GFF2370	0.23	-3.3
2,393,765	+		GFF2370	0.23	-1.5
2,393,765	+		GFF2370	0.23	-3.3
2,393,766	+		GFF2370	0.23	-1.9
2,393,773	-		GFF2370	0.24	-3.3
2,393,773	-		GFF2370	0.24	-2.2
2,393,773	-		GFF2370	0.24	-2.8
2,393,773	-		GFF2370	0.24	-1.8
2,393,773	-		GFF2370	0.24	-2.3
2,393,773	-		GFF2370	0.24	-2.2
2,393,794	+		GFF2370	0.25	-2.7
2,393,802	-		GFF2370	0.25	-2.0
2,393,834	-		GFF2370	0.28	-2.4
2,393,851	-		GFF2370	0.29	-2.3
2,393,868	+		GFF2370	0.30	-1.9
2,393,873	+		GFF2370	0.30	-1.5
2,393,874	-		GFF2370	0.30	-3.8
2,393,878	+		GFF2370	0.30	-3.1
2,393,886	-		GFF2370	0.31	-0.5
2,393,886	-		GFF2370	0.31	-3.6
2,393,888	-		GFF2370	0.31	-3.1
2,393,890	+		GFF2370	0.31	-2.6
2,393,903	+		GFF2370	0.32	-2.9
2,393,937	+		GFF2370	0.34	-1.5
2,393,937	+		GFF2370	0.34	-1.9
2,393,941	+		GFF2370	0.35	-1.3
2,393,941	+		GFF2370	0.35	-1.3
2,393,941	+		GFF2370	0.35	-2.4
2,393,941	+		GFF2370	0.35	-2.5
2,393,949	-		GFF2370	0.35	-2.3
2,393,949	-		GFF2370	0.35	-2.0
2,393,949	-		GFF2370	0.35	-2.5
2,393,949	-		GFF2370	0.35	-2.4
2,393,949	-		GFF2370	0.35	-2.2
2,393,949	-		GFF2370	0.35	-3.1
2,393,949	-		GFF2370	0.35	-4.8
2,393,957	+		GFF2370	0.36	-1.9
2,393,966	+		GFF2370	0.36	-2.3
2,393,974	-		GFF2370	0.37	-3.2
2,394,002	+		GFF2370	0.39	-2.6
2,394,021	-		GFF2370	0.40	-3.6
2,394,046	+		GFF2370	0.41	-2.5
2,394,108	-		GFF2370	0.46	-2.2
2,394,142	+		GFF2370	0.48	-3.5
2,394,142	+		GFF2370	0.48	-2.5
2,394,142	+		GFF2370	0.48	-3.0
2,394,142	+		GFF2370	0.48	-1.0
2,394,142	+		GFF2370	0.48	-2.1
2,394,145	+		GFF2370	0.48	-2.4
2,394,150	-		GFF2370	0.48	-2.3
2,394,150	-		GFF2370	0.48	-3.1
2,394,150	-		GFF2370	0.48	-3.0
2,394,150	-		GFF2370	0.48	-2.7
2,394,150	-		GFF2370	0.48	-2.5
2,394,150	-		GFF2370	0.48	-1.4
2,394,150	-		GFF2370	0.48	-1.9
2,394,151	-		GFF2370	0.48	-0.5
2,394,158	+		GFF2370	0.49	-3.5
2,394,174	-		GFF2370	0.50	-2.3
2,394,188	+		GFF2370	0.51	-2.7
2,394,192	+		GFF2370	0.51	-2.3
2,394,193	+		GFF2370	0.51	-3.0
2,394,196	-		GFF2370	0.51	-2.6
2,394,199	+		GFF2370	0.52	-3.3
2,394,200	-		GFF2370	0.52	-1.5
2,394,228	+		GFF2370	0.53	-0.3
2,394,234	-		GFF2370	0.54	-3.0
2,394,234	-		GFF2370	0.54	-0.9
2,394,238	+		GFF2370	0.54	-1.7
2,394,246	-		GFF2370	0.55	-2.3
2,394,246	-		GFF2370	0.55	-2.0
2,394,257	+		GFF2370	0.55	-2.3
2,394,258	-		GFF2370	0.55	-1.5
2,394,265	+		GFF2370	0.56	-1.3
2,394,270	+		GFF2370	0.56	-1.0
2,394,270	+		GFF2370	0.56	-1.7
2,394,273	-		GFF2370	0.56	-3.1
2,394,278	-		GFF2370	0.57	-3.0
2,394,285	+		GFF2370	0.57	-2.3
2,394,285	+		GFF2370	0.57	-2.7
2,394,285	+		GFF2370	0.57	-2.2
2,394,285	+		GFF2370	0.57	-1.5
2,394,285	+		GFF2370	0.57	-0.7
2,394,285	+		GFF2370	0.57	-1.6
2,394,285	+		GFF2370	0.57	-2.5
2,394,285	+		GFF2370	0.57	-2.3
2,394,285	+		GFF2370	0.57	-0.7
2,394,293	-		GFF2370	0.58	-0.6
2,394,293	-		GFF2370	0.58	-2.6
2,394,293	-		GFF2370	0.58	-2.0
2,394,293	-		GFF2370	0.58	-2.9
2,394,293	-		GFF2370	0.58	-2.8
2,394,293	-		GFF2370	0.58	-2.0
2,394,293	-		GFF2370	0.58	-3.1
2,394,293	-		GFF2370	0.58	-2.8
2,394,293	-		GFF2370	0.58	-2.2
2,394,293	-		GFF2370	0.58	-3.1
2,394,293	-		GFF2370	0.58	-1.9
2,394,303	-		GFF2370	0.58	-2.0
2,394,303	-		GFF2370	0.58	-2.6
2,394,359	+		GFF2370	0.62	-3.2
2,394,369	-		GFF2370	0.63	-2.0
2,394,389	+		GFF2370	0.64	-1.3
2,394,389	+		GFF2370	0.64	-3.0
2,394,397	-		GFF2370	0.65	-2.0
2,394,416	-		GFF2370	0.66	-2.7
2,394,416	-		GFF2370	0.66	-2.8
2,394,416	-		GFF2370	0.66	-2.3
2,394,433	+		GFF2370	0.67	-2.3
2,394,433	+		GFF2370	0.67	-4.0
2,394,433	+		GFF2370	0.67	-2.7
2,394,437	-		GFF2370	0.67	-1.6
2,394,461	+		GFF2370	0.69	-1.5
2,394,480	-		GFF2370	0.70	-2.9
2,394,504	+		GFF2370	0.72	-2.4
2,394,520	+		GFF2370	0.73	-2.3
2,394,543	+		GFF2370	0.74	-0.6
2,394,548	+		GFF2370	0.74	-2.1
2,394,548	+		GFF2370	0.74	-2.5
2,394,548	+		GFF2370	0.74	-2.3
2,394,553	-		GFF2370	0.75	-1.8
2,394,556	-		GFF2370	0.75	-2.5
2,394,556	-		GFF2370	0.75	-2.6
2,394,560	+		GFF2370	0.75	-2.3
2,394,611	+		GFF2370	0.79	-2.7
2,394,613	+		GFF2370	0.79	-2.8
2,394,621	-		GFF2370	0.79	-2.0
2,394,646	-		GFF2370	0.81	-2.1
2,394,648	+		GFF2370	0.81	-2.1
2,394,650	+		GFF2370	0.81	-1.9
2,394,658	-		GFF2370	0.82	-2.0
2,394,658	-		GFF2370	0.82	-1.7
2,394,735	-		GFF2370	0.87	-2.7
2,394,747	-		GFF2370	0.87	-1.8
2,394,751	+		GFF2370	0.88	-1.7
2,394,751	+		GFF2370	0.88	-3.0
2,394,751	-		GFF2370	0.88	-2.8
2,394,756	+		GFF2370	0.88	-3.1
2,394,759	-		GFF2370	0.88	-2.0
2,394,761	+		GFF2370	0.88	-2.5
2,394,764	-		GFF2370	0.89	-3.3
2,394,769	-		GFF2370	0.89	-3.0
2,394,769	-		GFF2370	0.89	-2.5
2,394,769	-		GFF2370	0.89	-2.0
2,394,774	-		GFF2370	0.89	-2.6
2,394,774	-		GFF2370	0.89	-1.7
2,394,779	+		GFF2370	0.90	-2.5
2,394,779	-		GFF2370	0.90	-2.3
2,394,794	+				-1.6
2,394,799	+				-2.4
2,394,799	+				-1.3
2,394,799	+				-2.7
2,394,799	+				-2.8
2,394,799	+				-2.3
2,394,808	-				-2.4
2,394,840	+				-1.5
2,394,840	+				-3.0
2,394,845	-				-0.6
2,394,848	-				+0.7
2,394,848	-				-1.9
2,394,871	-				-2.7
2,394,878	+				-0.8
2,394,880	+				-2.9
2,394,899	+				-3.1
2,394,899	+				+0.7
2,394,899	+				-2.9
2,394,924	+				-0.3
2,394,932	+				+1.7
2,394,932	+				+0.1
2,394,965	+				-1.7
2,395,005	-				+0.9
2,395,010	-				+0.4
2,395,024	+				+1.0
2,395,029	+				+0.5
2,395,034	+				-2.1
2,395,034	+				+1.5
2,395,037	-				-0.8
2,395,048	+				-1.7
2,395,058	-				+0.2
2,395,069	+				+1.7
2,395,071	+				+0.7
2,395,071	+				-1.2
2,395,074	+				+0.4
2,395,101	-				-0.2
2,395,129	+				+0.9
2,395,129	+				+1.0
2,395,137	-				+1.3
2,395,226	-		GFF2371	0.19	+0.1
2,395,226	-		GFF2371	0.19	-1.0
2,395,242	-		GFF2371	0.25	+0.1
2,395,242	-		GFF2371	0.25	+0.2
2,395,256	-		GFF2371	0.31	-1.1
2,395,270	-		GFF2371	0.37	-1.5
2,395,319	-		GFF2371	0.58	-0.4
2,395,320	-		GFF2371	0.58	-0.3
2,395,323	+		GFF2371	0.59	-0.6
2,395,331	-		GFF2371	0.63	-0.2
2,395,331	-		GFF2371	0.63	+0.4
2,395,332	-		GFF2371	0.63	+0.5
2,395,338	+		GFF2371	0.66	-0.9
2,395,338	-		GFF2371	0.66	-0.3
2,395,346	-		GFF2371	0.69	+0.0
2,395,377	+		GFF2371	0.82	+0.6
2,395,382	+		GFF2371	0.84	-1.0
2,395,382	+		GFF2371	0.84	+0.5
2,395,385	-		GFF2371	0.86	-2.0
2,395,385	-		GFF2371	0.86	-0.6
2,395,390	-		GFF2371	0.88	+0.8
2,395,395	-				+1.0
2,395,405	-				+0.7
2,395,406	+				-0.6
2,395,406	+				-1.2
2,395,412	+				-1.8
2,395,415	-				-0.8
2,395,420	-				-0.7
2,395,429	+				-1.0
2,395,437	+				-0.5
2,395,437	-				+1.0
2,395,464	-				-1.5
2,395,478	+				+0.3
2,395,508	+				+0.4
2,395,516	-		GFF2372	0.11	+0.1
2,395,528	-		GFF2372	0.12	-2.3
2,395,528	-		GFF2372	0.12	-1.0
2,395,528	-		GFF2372	0.12	+1.0
2,395,532	+		GFF2372	0.13	-0.5
2,395,540	-		GFF2372	0.14	-0.0
2,395,583	+		GFF2372	0.20	-0.3
2,395,583	+		GFF2372	0.20	+1.0
2,395,583	+		GFF2372	0.20	-0.3
2,395,588	+		GFF2372	0.21	-0.9
2,395,590	-		GFF2372	0.21	-1.1
2,395,591	-		GFF2372	0.21	-0.5
2,395,591	-		GFF2372	0.21	+0.2
2,395,591	-		GFF2372	0.21	+1.1
2,395,593	+		GFF2372	0.21	-0.7
2,395,593	+		GFF2372	0.21	-0.5
2,395,596	-		GFF2372	0.22	-0.3
2,395,596	-		GFF2372	0.22	+0.9
2,395,596	-		GFF2372	0.22	-2.5
2,395,601	-		GFF2372	0.22	+0.9
2,395,601	-		GFF2372	0.22	-0.6
2,395,603	+		GFF2372	0.23	+0.3
2,395,611	-		GFF2372	0.24	+1.3
2,395,618	+		GFF2372	0.25	+0.0
2,395,621	-		GFF2372	0.25	-0.7
2,395,622	-		GFF2372	0.25	+0.9
2,395,626	-		GFF2372	0.26	-0.5
2,395,641	-		GFF2372	0.28	-1.0
2,395,702	+		GFF2372	0.36	-0.2
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