Strain Fitness in Sphingobium sp. HT1-2 around GFF1026

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,024,961	-				+0.2
1,024,968	+				-1.0
1,024,968	+				+1.1
1,024,968	+				-0.8
1,024,976	-				+0.2
1,024,976	-				+0.0
1,024,976	-				-2.2
1,024,982	-				-0.9
1,024,985	+				-0.1
1,025,027	-				-0.1
1,025,041	-				+0.2
1,025,166	+		GFF1025	0.19	-1.0
1,025,182	-		GFF1025	0.21	-1.8
1,025,199	-		GFF1025	0.23	-0.1
1,025,199	-		GFF1025	0.23	-1.8
1,025,208	-		GFF1025	0.24	+0.7
1,025,213	-		GFF1025	0.25	-0.2
1,025,226	-		GFF1025	0.26	+0.4
1,025,226	-		GFF1025	0.26	-1.3
1,025,242	+		GFF1025	0.28	-1.0
1,025,307	-		GFF1025	0.36	+0.7
1,025,307	-		GFF1025	0.36	-1.1
1,025,308	-		GFF1025	0.36	-2.2
1,025,319	+		GFF1025	0.37	+0.6
1,025,343	+		GFF1025	0.40	-0.1
1,025,399	-		GFF1025	0.47	+0.2
1,025,412	+		GFF1025	0.48	+0.1
1,025,412	+		GFF1025	0.48	-0.6
1,025,412	-		GFF1025	0.48	+0.1
1,025,420	-		GFF1025	0.49	-0.1
1,025,435	-		GFF1025	0.51	-2.0
1,025,435	-		GFF1025	0.51	+0.7
1,025,435	-		GFF1025	0.51	+0.3
1,025,465	+		GFF1025	0.55	-1.2
1,025,472	-		GFF1025	0.56	-0.8
1,025,473	-		GFF1025	0.56	-0.2
1,025,473	-		GFF1025	0.56	+0.8
1,025,473	-		GFF1025	0.56	-1.6
1,025,474	+		GFF1025	0.56	+1.4
1,025,489	+		GFF1025	0.58	+0.6
1,025,497	-		GFF1025	0.59	+0.0
1,025,497	-		GFF1025	0.59	-3.0
1,025,497	-		GFF1025	0.59	+0.0
1,025,533	-		GFF1025	0.63	-2.0
1,025,571	+		GFF1025	0.67	-2.2
1,025,639	+		GFF1025	0.75	-0.5
1,025,713	+		GFF1025	0.84	+0.6
1,025,732	+		GFF1025	0.87	-0.0
1,025,732	+		GFF1025	0.87	+1.2
1,025,732	+		GFF1025	0.87	-0.3
1,025,737	+		GFF1025	0.87	+0.1
1,025,737	+		GFF1025	0.87	-0.0
1,025,737	+		GFF1025	0.87	-0.6
1,025,737	+		GFF1025	0.87	-1.2
1,025,737	+		GFF1025	0.87	+1.7
1,025,737	+		GFF1025	0.87	-0.3
1,025,740	-		GFF1025	0.88	-1.0
1,025,740	-		GFF1025	0.88	-0.3
1,025,740	-		GFF1025	0.88	-1.4
1,025,740	-		GFF1025	0.88	-1.0
1,025,745	-		GFF1025	0.88	-0.7
1,025,745	-		GFF1025	0.88	+1.0
1,025,745	-		GFF1025	0.88	-2.0
1,025,768	-				-0.4
1,025,768	-				-2.3
1,025,768	-				-2.5
1,025,768	-				-0.9
1,025,769	-				-0.8
1,025,769	-				-0.5
1,025,775	-				+0.4
1,025,775	-				-0.4
1,025,775	-				-0.8
1,025,775	-				-0.3
1,025,775	-				+1.1
1,025,775	-				-1.8
1,025,775	-				-0.7
1,025,828	+				-0.2
1,025,828	+				-1.6
1,025,838	+				+0.1
1,025,839	+				-0.4
1,025,847	-				-0.5
1,025,864	+				+0.1
1,025,864	+				+0.3
1,025,870	+				-1.0
1,025,872	-				-2.6
1,025,879	-				-0.1
1,025,881	+				-0.0
1,025,881	+				+1.0
1,025,889	-				-1.1
1,025,889	-				-0.3
1,025,889	-				-0.2
1,025,891	+				+0.6
1,025,891	+				-1.1
1,025,891	+				-0.1
1,025,891	+				-0.7
1,025,891	+				+0.4
1,025,891	+				+0.6
1,025,891	+				-0.1
1,025,891	+				+0.4
1,025,891	+				+1.1
1,025,891	+				-0.2
1,025,891	+				+0.4
1,025,891	+				+1.3
1,025,891	+				-0.9
1,025,891	+				+0.3
1,025,891	+				+0.0
1,025,891	+				+0.8
1,025,891	+				-0.7
1,025,891	+				-0.7
1,025,891	+				-0.5
1,025,891	+				-1.9
1,025,891	+				-0.1
1,025,891	+				-1.0
1,025,891	+				-0.1
1,025,891	+				+0.5
1,025,891	+				+0.1
1,025,891	+				+0.6
1,025,891	+				+0.6
1,025,891	+				-1.8
1,025,891	+				-0.9
1,025,892	+				+0.5
1,025,899	-				-0.0
1,025,899	-				+0.0
1,025,899	-				+0.4
1,025,899	-				-1.2
1,025,899	-				-0.1
1,025,899	-				-1.2
1,025,899	-				+0.1
1,025,899	-				+1.2
1,025,899	-				-0.9
1,025,899	-				+0.1
1,025,899	-				-0.5
1,025,899	-				-0.4
1,025,899	-				-0.5
1,025,899	-				+0.1
1,025,899	-				+0.6
1,025,899	-				+0.0
1,025,899	-				-1.2
1,025,899	-				-0.1
1,025,899	-				-1.1
1,025,899	-				-0.4
1,025,899	-				-0.2
1,025,900	-				-1.8
1,025,902	+				+0.5
1,025,904	+				+1.8
1,025,910	-				-1.5
1,025,910	-				-1.6
1,025,911	-				+0.3
1,025,934	-				-1.9
1,025,939	-				-2.1
1,025,947	-				-1.6
1,025,976	-				-0.4
1,026,102	+		GFF1026	0.22	+0.4
1,026,119	-		GFF1026	0.25	-0.1
1,026,126	+		GFF1026	0.26	-0.8
1,026,145	-		GFF1026	0.28	-1.7
1,026,145	-		GFF1026	0.28	-0.2
1,026,315	-		GFF1026	0.51	-0.8
1,026,393	+		GFF1026	0.61	-1.8
1,026,393	+		GFF1026	0.61	-0.4
1,026,393	+		GFF1026	0.61	+0.3
1,026,398	+		GFF1026	0.62	+0.6
1,026,401	-		GFF1026	0.62	+0.5
1,026,401	-		GFF1026	0.62	-1.0
1,026,401	-		GFF1026	0.62	-1.6
1,026,401	-		GFF1026	0.62	+0.3
1,026,401	-		GFF1026	0.62	+0.2
1,026,401	-		GFF1026	0.62	-1.5
1,026,401	-		GFF1026	0.62	-0.8
1,026,401	-		GFF1026	0.62	-2.4
1,026,401	-		GFF1026	0.62	+0.3
1,026,401	-		GFF1026	0.62	-0.2
1,026,403	+		GFF1026	0.62	-0.3
1,026,406	-		GFF1026	0.63	-1.6
1,026,411	-		GFF1026	0.63	-0.2
1,026,432	-		GFF1026	0.66	-0.1
1,026,437	-		GFF1026	0.67	+0.1
1,026,573	+		GFF1026	0.85	-0.6
1,026,592	-		GFF1026	0.87	-3.0
1,026,659	-				-0.4
1,026,674	+				+0.6
1,026,689	+				-0.4
1,026,707	+				-1.0
1,026,717	+				+0.2
1,026,717	+				-0.7
1,026,722	+				-1.8
1,026,722	+				-1.2
1,026,722	+				-0.3
1,026,722	+				+0.2
1,026,722	+				+0.4
1,026,725	-				-0.7
1,026,727	+				-0.1
1,026,727	+				+0.0
1,026,727	+				-0.3
1,026,730	-				-0.8
1,026,730	-				+0.1
1,026,730	-				-0.4
1,026,730	-				-0.9
1,026,730	-				-2.1
1,026,735	-				+0.1
1,026,735	-				-2.2
1,026,735	-				+0.9
1,026,735	-				+0.5
1,026,735	-				-0.1
1,026,749	-				-1.2
1,026,752	-				-1.1
1,026,762	+				+1.2
1,026,762	+				+0.0
1,026,770	-				+0.6
1,026,775	-				-1.5
1,026,777	+				-1.3
1,026,785	+				+0.7
1,026,802	+				+0.2
1,026,812	+				-0.9
1,026,820	-				-1.6
1,026,820	-				+0.3
1,026,821	+				-0.3
1,026,825	-				-0.2
1,026,827	+				+0.4
1,026,832	+				-0.0
1,026,833	+				-0.5
1,026,841	-				+1.2
1,026,841	-				+0.4
1,026,854	+				+0.3
1,026,858	+				+0.7
1,026,858	+				-0.4
1,026,858	+				+0.2
1,026,858	+				-0.7
1,026,862	-				-0.6
1,026,866	-				+0.3
1,026,866	-				-1.3
1,026,875	+				-0.7
1,026,876	-				-0.4
1,026,883	-				+0.7
1,026,883	-				-0.4
1,026,883	-				+0.5
1,026,890	+				-0.1
1,026,903	+				-1.4
1,026,903	+				-0.1
1,026,908	+				+0.4
1,026,908	+				-2.1
1,026,908	+				+0.2
1,026,911	-				+0.5
1,026,916	-				+0.2
1,026,916	-				+0.7
1,026,916	-				+0.8
1,026,943	+				-0.6
1,026,962	+				-1.4
1,026,996	-				+0.6
1,026,996	-				-0.3
1,027,067	+		GFF1027	0.12	-2.5
1,027,075	-		GFF1027	0.12	-0.7
1,027,100	+		GFF1027	0.13	+0.1
1,027,100	+		GFF1027	0.13	+0.0
1,027,100	+		GFF1027	0.13	-0.8
1,027,100	+		GFF1027	0.13	-0.3
1,027,100	+		GFF1027	0.13	-0.3
1,027,105	-		GFF1027	0.14	-0.6
1,027,107	+		GFF1027	0.14	-0.4
1,027,108	-		GFF1027	0.14	-2.8
1,027,108	-		GFF1027	0.14	-1.0
1,027,108	-		GFF1027	0.14	-0.2
1,027,108	-		GFF1027	0.14	+1.0
1,027,108	-		GFF1027	0.14	-0.1
1,027,108	-		GFF1027	0.14	-0.2
1,027,108	-		GFF1027	0.14	+1.0
1,027,126	-		GFF1027	0.15	-1.5
1,027,134	+		GFF1027	0.15	-0.9
1,027,152	-		GFF1027	0.16	-1.3
1,027,156	-		GFF1027	0.16	+0.3
1,027,156	-		GFF1027	0.16	-1.0
1,027,173	-		GFF1027	0.16	+1.2
1,027,195	-		GFF1027	0.17	-0.3
1,027,211	-		GFF1027	0.18	+0.6
1,027,225	+		GFF1027	0.19	-0.1
1,027,226	+		GFF1027	0.19	-0.6
1,027,234	-		GFF1027	0.19	+1.0
1,027,234	-		GFF1027	0.19	-0.8
1,027,256	-		GFF1027	0.20	-1.0
1,027,259	+		GFF1027	0.20	-0.1
1,027,270	+		GFF1027	0.21	+0.1
1,027,283	+		GFF1027	0.21	-1.5
1,027,283	+		GFF1027	0.21	-1.0
1,027,291	-		GFF1027	0.21	-1.0
1,027,303	-		GFF1027	0.22	+0.3
1,027,303	-		GFF1027	0.22	-1.0
1,027,305	+		GFF1027	0.22	-1.7
1,027,305	+		GFF1027	0.22	-1.3
1,027,310	+		GFF1027	0.22	-1.4
1,027,313	-		GFF1027	0.22	-0.8
1,027,313	-		GFF1027	0.22	+0.4
1,027,313	-		GFF1027	0.22	+0.1
1,027,314	+		GFF1027	0.22	+0.8
1,027,318	-		GFF1027	0.23	-1.3
1,027,318	-		GFF1027	0.23	-1.5
1,027,318	-		GFF1027	0.23	-0.6
1,027,337	-		GFF1027	0.23	+0.6
1,027,337	-		GFF1027	0.23	-0.4
1,027,342	-		GFF1027	0.24	-2.7
1,027,347	+		GFF1027	0.24	-2.1
1,027,356	+		GFF1027	0.24	-0.5
1,027,359	-		GFF1027	0.24	-1.7
1,027,361	-		GFF1027	0.24	+1.0
1,027,365	+		GFF1027	0.24	-2.2
1,027,365	+		GFF1027	0.24	+0.5
1,027,365	+		GFF1027	0.24	+0.5
1,027,367	+		GFF1027	0.25	+0.5
1,027,375	-		GFF1027	0.25	-0.1
1,027,412	+		GFF1027	0.26	+0.5
1,027,413	+		GFF1027	0.26	-0.7
1,027,427	+		GFF1027	0.27	-1.0
1,027,427	+		GFF1027	0.27	+0.6
1,027,427	+		GFF1027	0.27	-0.7
1,027,427	+		GFF1027	0.27	-1.1
1,027,427	+		GFF1027	0.27	+0.6
1,027,427	+		GFF1027	0.27	+0.1
1,027,427	+		GFF1027	0.27	-0.5
1,027,435	-		GFF1027	0.27	-2.4
1,027,435	-		GFF1027	0.27	-1.5
1,027,440	-		GFF1027	0.28	-0.4
1,027,447	-		GFF1027	0.28	-1.3
1,027,451	+		GFF1027	0.28	-0.6
1,027,466	+		GFF1027	0.29	-2.0
1,027,479	+		GFF1027	0.29	+1.2
1,027,497	+		GFF1027	0.30	-1.2
1,027,497	+		GFF1027	0.30	-0.1
1,027,497	+		GFF1027	0.30	-0.9
1,027,497	+		GFF1027	0.30	-0.1
1,027,497	+		GFF1027	0.30	-0.2
1,027,497	+		GFF1027	0.30	-0.6
1,027,497	+		GFF1027	0.30	+0.1
1,027,497	+		GFF1027	0.30	-1.6
1,027,497	+		GFF1027	0.30	-0.6
1,027,500	-		GFF1027	0.30	-0.7
1,027,505	-		GFF1027	0.30	-0.6
1,027,505	-		GFF1027	0.30	-0.1
1,027,505	-		GFF1027	0.30	-0.4
1,027,505	-		GFF1027	0.30	-1.9
1,027,505	-		GFF1027	0.30	-0.1
1,027,505	-		GFF1027	0.30	-1.2
1,027,505	-		GFF1027	0.30	-0.0
1,027,505	-		GFF1027	0.30	+1.2
1,027,505	-		GFF1027	0.30	-0.8
1,027,505	-		GFF1027	0.30	-1.6
1,027,505	-		GFF1027	0.30	+0.2
1,027,514	+		GFF1027	0.31	+1.3
1,027,514	+		GFF1027	0.31	-0.4
1,027,514	+		GFF1027	0.31	+0.8
1,027,518	+		GFF1027	0.31	-1.7
1,027,518	+		GFF1027	0.31	+1.0
1,027,518	+		GFF1027	0.31	-1.2
1,027,518	+		GFF1027	0.31	-2.9
1,027,518	+		GFF1027	0.31	-1.8
1,027,522	-		GFF1027	0.31	-0.3
1,027,522	-		GFF1027	0.31	-0.4
1,027,526	-		GFF1027	0.31	+1.0
1,027,526	-		GFF1027	0.31	+0.5
1,027,526	-		GFF1027	0.31	+1.5
1,027,526	-		GFF1027	0.31	-0.0
1,027,534	+		GFF1027	0.32	-0.7
1,027,539	+		GFF1027	0.32	-1.9
1,027,547	-		GFF1027	0.32	-0.1
1,027,568	+		GFF1027	0.33	-0.8
1,027,576	-		GFF1027	0.33	+1.1
1,027,637	+		GFF1027	0.36	-1.2
1,027,649	+		GFF1027	0.36	-0.0
1,027,657	-		GFF1027	0.37	-0.1
1,027,657	-		GFF1027	0.37	+0.8
1,027,668	+		GFF1027	0.37	+0.4