Strain Fitness in Sphingobium sp. HT1-2 around GFF5188

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,181,506	-		GFF5187	0.77	+0.0
5,181,506	-		GFF5187	0.77	+0.0
5,181,506	-		GFF5187	0.77	-1.6
5,181,517	+		GFF5187	0.77	-0.7
5,181,525	-		GFF5187	0.78	+1.7
5,181,547	-		GFF5187	0.79	+0.4
5,181,577	-		GFF5187	0.80	+0.3
5,181,604	+		GFF5187	0.82	+0.4
5,181,611	+		GFF5187	0.82	+1.1
5,181,618	+		GFF5187	0.82	-0.3
5,181,637	-		GFF5187	0.83	-2.9
5,181,643	-		GFF5187	0.83	+0.8
5,181,648	+		GFF5187	0.84	-2.2
5,181,656	-		GFF5187	0.84	+0.4
5,181,666	+		GFF5187	0.85	-0.2
5,181,667	-		GFF5187	0.85	+0.3
5,181,669	-		GFF5187	0.85	+0.1
5,181,674	-		GFF5187	0.85	+0.3
5,181,682	-		GFF5187	0.85	-0.7
5,181,744	+		GFF5187	0.88	-1.6
5,181,746	+		GFF5187	0.89	+1.3
5,181,752	-		GFF5187	0.89	-0.0
5,181,776	-				-1.4
5,181,819	+				+0.6
5,181,827	-				+0.3
5,181,832	-				-0.8
5,181,834	-				+0.5
5,181,844	-				-0.2
5,181,849	+				-1.9
5,181,849	+				-0.7
5,181,849	+				-0.1
5,181,849	+				-0.1
5,181,849	+				-0.2
5,181,849	+				+1.4
5,181,849	+				-0.0
5,181,857	-				-0.6
5,181,859	+				+0.6
5,181,859	+				-0.7
5,181,859	+				+0.3
5,181,862	-				-1.1
5,181,883	-				+0.6
5,181,895	-				+0.3
5,181,933	+				-0.2
5,182,035	-				+0.3
5,182,043	-				+0.5
5,182,112	-				-0.0
5,182,123	+				+0.6
5,182,158	-				-1.9
5,182,178	+				-1.7
5,182,183	+				-0.1
5,182,183	+				-1.7
5,182,186	-				-0.4
5,182,188	+				-0.2
5,182,196	-				+0.4
5,182,196	-				+0.3
5,182,196	-				-0.3
5,182,198	-				-0.9
5,182,203	+				-0.3
5,182,216	-				+2.1
5,182,226	-				-1.7
5,182,250	+				+0.4
5,182,296	-				-0.6
5,182,323	-				-0.7
5,182,337	+				-3.0
5,182,345	-				+0.5
5,182,397	+				-0.7
5,182,397	+				+0.4
5,182,400	-				-0.3
5,182,414	-				-0.7
5,182,416	+				-0.2
5,182,421	+				+1.4
5,182,442	+				+0.6
5,182,469	-				-0.9
5,182,475	-				+0.0
5,182,494	+				+0.4
5,182,501	+				+0.5
5,182,509	-				-0.5
5,182,523	-				+1.3
5,182,536	-				+1.7
5,182,546	+				-1.9
5,182,546	+				-1.2
5,182,546	+				-0.2
5,182,546	+				-0.3
5,182,546	+				+0.7
5,182,546	+				-1.4
5,182,546	+				-0.7
5,182,546	+				+0.1
5,182,546	+				-0.1
5,182,546	+				-0.1
5,182,546	+				-0.2
5,182,546	+				+0.1
5,182,546	+				+1.5
5,182,546	+				+0.3
5,182,546	+				+0.6
5,182,546	+				-0.0
5,182,546	+				-0.3
5,182,546	+				-1.0
5,182,546	+				+1.4
5,182,546	+				+0.4
5,182,546	+				+1.7
5,182,546	+				-0.8
5,182,546	+				-0.6
5,182,546	+				-1.6
5,182,546	+				+1.2
5,182,549	-				+0.1
5,182,549	-				-0.3
5,182,551	+				-0.7
5,182,553	+				-0.9
5,182,553	+				+0.0
5,182,554	-				-1.7
5,182,554	-				-0.6
5,182,554	-				-2.6
5,182,554	-				+0.4
5,182,554	-				-1.8
5,182,554	-				+0.1
5,182,554	-				-1.1
5,182,554	-				+1.1
5,182,554	-				-1.3
5,182,554	-				-1.3
5,182,554	-				-1.9
5,182,554	-				+0.6
5,182,554	-				-0.2
5,182,554	-				-0.9
5,182,554	-				+0.3
5,182,554	-				-0.7
5,182,554	-				+0.8
5,182,554	-				+0.0
5,182,554	-				+0.9
5,182,585	-				-0.2
5,182,590	-				-1.0
5,182,607	+				+0.6
5,182,610	+				-0.4
5,182,628	+				+0.7
5,182,633	+				-0.4
5,182,660	-				-0.3
5,182,667	-				-0.0
5,182,688	+				+1.0
5,182,690	+				-0.1
5,182,695	+				-1.2
5,182,703	-				+0.4
5,182,703	-				+0.5
5,182,721	+				+0.4
5,182,819	+		GFF5188	0.12	-3.1
5,182,827	+		GFF5188	0.12	+0.6
5,182,827	+		GFF5188	0.12	+0.8
5,182,827	-		GFF5188	0.12	+0.0
5,182,829	+		GFF5188	0.13	+0.2
5,182,829	+		GFF5188	0.13	+0.1
5,182,829	+		GFF5188	0.13	-0.2
5,182,829	+		GFF5188	0.13	-0.4
5,182,835	-		GFF5188	0.13	-0.2
5,182,837	-		GFF5188	0.13	+0.7
5,182,872	+		GFF5188	0.14	-0.2
5,182,880	-		GFF5188	0.14	+1.0
5,182,880	-		GFF5188	0.14	-1.7
5,182,887	+		GFF5188	0.14	-0.9
5,182,906	+		GFF5188	0.15	+1.0
5,182,909	+		GFF5188	0.15	-1.2
5,182,922	+		GFF5188	0.16	-0.7
5,182,935	+		GFF5188	0.16	+0.3
5,182,943	-		GFF5188	0.16	-0.9
5,182,956	+		GFF5188	0.17	-0.6
5,182,958	-		GFF5188	0.17	-1.1
5,182,966	-		GFF5188	0.17	-0.4
5,182,979	-		GFF5188	0.17	-2.0
5,182,997	+		GFF5188	0.18	+0.4
5,183,009	+		GFF5188	0.18	+0.4
5,183,029	+		GFF5188	0.19	+1.0
5,183,036	-		GFF5188	0.19	+1.2
5,183,048	-		GFF5188	0.20	-1.1
5,183,050	+		GFF5188	0.20	-0.0
5,183,064	+		GFF5188	0.20	+0.8
5,183,064	+		GFF5188	0.20	-1.1
5,183,064	+		GFF5188	0.20	-0.3
5,183,064	-		GFF5188	0.20	+0.4
5,183,069	+		GFF5188	0.20	+0.9
5,183,072	-		GFF5188	0.20	-0.4
5,183,072	-		GFF5188	0.20	+0.3
5,183,103	-		GFF5188	0.21	-0.4
5,183,108	-		GFF5188	0.22	+0.5
5,183,147	+		GFF5188	0.23	-2.3
5,183,148	+		GFF5188	0.23	-0.7
5,183,155	-		GFF5188	0.23	-1.1
5,183,162	+		GFF5188	0.23	+0.2
5,183,170	-		GFF5188	0.24	+0.3
5,183,224	+		GFF5188	0.25	-0.3
5,183,231	-		GFF5188	0.26	+1.3
5,183,246	-		GFF5188	0.26	+1.0
5,183,288	-		GFF5188	0.28	+0.3
5,183,290	+		GFF5188	0.28	+0.3
5,183,298	-		GFF5188	0.28	-1.1
5,183,298	-		GFF5188	0.28	+0.4
5,183,298	-		GFF5188	0.28	-0.2
5,183,298	-		GFF5188	0.28	-0.5
5,183,298	-		GFF5188	0.28	+0.8
5,183,298	-		GFF5188	0.28	-0.9
5,183,298	-		GFF5188	0.28	+0.9
5,183,298	-		GFF5188	0.28	-0.9
5,183,315	-		GFF5188	0.28	-1.4
5,183,315	-		GFF5188	0.28	+0.8
5,183,329	-		GFF5188	0.29	+0.7
5,183,353	+		GFF5188	0.30	+0.8
5,183,353	+		GFF5188	0.30	+0.3
5,183,353	+		GFF5188	0.30	+0.7
5,183,353	+		GFF5188	0.30	+0.1
5,183,361	-		GFF5188	0.30	+0.9
5,183,361	-		GFF5188	0.30	-1.0
5,183,361	-		GFF5188	0.30	-0.5
5,183,361	-		GFF5188	0.30	-0.2
5,183,361	-		GFF5188	0.30	+0.6
5,183,361	-		GFF5188	0.30	-1.4
5,183,361	-		GFF5188	0.30	-0.6
5,183,386	+		GFF5188	0.31	-0.4
5,183,386	+		GFF5188	0.31	+0.8
5,183,386	+		GFF5188	0.31	+0.2
5,183,386	+		GFF5188	0.31	-0.1
5,183,391	+		GFF5188	0.31	-0.9
5,183,406	+		GFF5188	0.31	-0.8
5,183,432	+		GFF5188	0.32	-0.0
5,183,445	+		GFF5188	0.33	+0.0
5,183,445	+		GFF5188	0.33	+0.9
5,183,448	-		GFF5188	0.33	+0.8
5,183,456	+		GFF5188	0.33	-1.6
5,183,456	+		GFF5188	0.33	+0.3
5,183,456	+		GFF5188	0.33	+0.1
5,183,456	+		GFF5188	0.33	+0.9
5,183,456	+		GFF5188	0.33	-0.2
5,183,456	+		GFF5188	0.33	-2.1
5,183,456	+		GFF5188	0.33	+0.3
5,183,456	+		GFF5188	0.33	-0.1
5,183,456	+		GFF5188	0.33	+0.4
5,183,459	-		GFF5188	0.33	-0.3
5,183,464	-		GFF5188	0.33	+0.4
5,183,464	-		GFF5188	0.33	+0.4
5,183,464	-		GFF5188	0.33	+0.6
5,183,464	-		GFF5188	0.33	+0.6
5,183,464	-		GFF5188	0.33	-1.7
5,183,464	-		GFF5188	0.33	+1.5
5,183,464	-		GFF5188	0.33	-0.2
5,183,464	-		GFF5188	0.33	-1.7
5,183,464	-		GFF5188	0.33	-1.2
5,183,474	-		GFF5188	0.34	+0.8
5,183,477	-		GFF5188	0.34	-2.1
5,183,514	+		GFF5188	0.35	-2.3
5,183,519	+		GFF5188	0.35	-0.2
5,183,519	+		GFF5188	0.35	+0.3
5,183,522	-		GFF5188	0.35	+0.8
5,183,527	-		GFF5188	0.35	-0.9
5,183,558	+		GFF5188	0.36	-0.7
5,183,566	-		GFF5188	0.37	-1.3
5,183,568	+		GFF5188	0.37	+0.4
5,183,568	-		GFF5188	0.37	-1.2
5,183,578	+		GFF5188	0.37	+1.9
5,183,578	+		GFF5188	0.37	-0.1
5,183,581	-		GFF5188	0.37	-0.3
5,183,586	-		GFF5188	0.37	-0.2
5,183,623	+		GFF5188	0.38	+0.3
5,183,634	+		GFF5188	0.39	+0.9
5,183,635	-		GFF5188	0.39	+1.4
5,183,642	+		GFF5188	0.39	-1.1
5,183,647	+		GFF5188	0.39	-0.7
5,183,647	+		GFF5188	0.39	+1.0
5,183,655	-		GFF5188	0.39	-2.6
5,183,662	-		GFF5188	0.40	-0.0
5,183,667	-		GFF5188	0.40	-0.7
5,183,670	+		GFF5188	0.40	-0.7
5,183,670	-		GFF5188	0.40	-0.3
5,183,678	-		GFF5188	0.40	-2.1
5,183,678	-		GFF5188	0.40	-0.2
5,183,684	+		GFF5188	0.40	-1.2
5,183,692	-		GFF5188	0.41	-1.2
5,183,697	-		GFF5188	0.41	-2.2
5,183,718	+		GFF5188	0.42	+0.1
5,183,723	+		GFF5188	0.42	+0.1
5,183,728	+		GFF5188	0.42	-0.5
5,183,733	+		GFF5188	0.42	-0.2
5,183,734	+		GFF5188	0.42	-0.2
5,183,736	-		GFF5188	0.42	+1.6
5,183,753	+		GFF5188	0.43	+0.3
5,183,840	+		GFF5188	0.45	-1.5
5,183,848	-		GFF5188	0.46	-1.2
5,183,890	-		GFF5188	0.47	+0.7
5,183,905	-		GFF5188	0.48	-0.3
5,183,909	+		GFF5188	0.48	+0.0
5,183,954	+		GFF5188	0.49	+0.2
5,183,973	-		GFF5188	0.50	-0.9
5,183,990	+		GFF5188	0.50	+0.4
5,183,996	-		GFF5188	0.51	-0.2
5,184,074	+		GFF5188	0.53	-0.7
5,184,087	+		GFF5188	0.54	-2.1
5,184,095	+		GFF5188	0.54	-0.1
5,184,095	+		GFF5188	0.54	-0.6
5,184,096	+		GFF5188	0.54	+0.6
5,184,103	-		GFF5188	0.54	-0.2
5,184,103	-		GFF5188	0.54	+1.2
5,184,118	-		GFF5188	0.55	+0.4
5,184,118	-		GFF5188	0.55	-0.7
5,184,124	-		GFF5188	0.55	+0.1
5,184,142	-		GFF5188	0.55	+0.5
5,184,165	+		GFF5188	0.56	-0.3
5,184,170	+		GFF5188	0.56	-0.3
5,184,176	+		GFF5188	0.56	-0.6
5,184,178	-		GFF5188	0.56	+0.1
5,184,193	+		GFF5188	0.57	-1.4
5,184,196	-		GFF5188	0.57	-0.7
5,184,198	+		GFF5188	0.57	-0.4
5,184,201	-		GFF5188	0.57	-0.7
5,184,248	+		GFF5188	0.59	+0.5
5,184,248	+		GFF5188	0.59	+1.4
5,184,248	+		GFF5188	0.59	+1.3
5,184,250	+		GFF5188	0.59	+0.6
5,184,251	+		GFF5188	0.59	+0.7
5,184,251	+		GFF5188	0.59	+1.7
5,184,256	-		GFF5188	0.59	+0.6
5,184,256	-		GFF5188	0.59	+0.3
5,184,258	-		GFF5188	0.59	-0.0
5,184,270	-		GFF5188	0.59	+0.5
5,184,293	+		GFF5188	0.60	-0.6
5,184,306	+		GFF5188	0.61	+0.1
5,184,314	-		GFF5188	0.61	+1.1
5,184,314	-		GFF5188	0.61	+1.1
5,184,319	+		GFF5188	0.61	+0.8
5,184,319	+		GFF5188	0.61	+0.1
5,184,327	-		GFF5188	0.61	-0.7
5,184,332	+		GFF5188	0.61	+0.4
5,184,335	-		GFF5188	0.62	+0.1
5,184,345	+		GFF5188	0.62	+0.3
5,184,345	+		GFF5188	0.62	+0.7
5,184,353	-		GFF5188	0.62	-0.0
5,184,353	-		GFF5188	0.62	-1.9
5,184,370	-		GFF5188	0.63	+0.8
5,184,375	+		GFF5188	0.63	-1.7
5,184,388	-		GFF5188	0.63	-0.1
5,184,424	+		GFF5188	0.64	-2.8
5,184,432	-		GFF5188	0.65	+0.6
5,184,449	+		GFF5188	0.65	-0.2
5,184,451	-		GFF5188	0.65	-1.2
5,184,492	+		GFF5188	0.67	-1.3
5,184,497	+		GFF5188	0.67	-0.1
5,184,497	+		GFF5188	0.67	+0.6
5,184,497	+		GFF5188	0.67	-0.7
5,184,503	+		GFF5188	0.67	+0.9
5,184,511	+		GFF5188	0.67	-0.2
5,184,515	-		GFF5188	0.67	-0.1
5,184,542	-		GFF5188	0.68	+0.2
5,184,565	+		GFF5188	0.69	-0.2
5,184,618	-		GFF5188	0.71	-0.9
5,184,632	-		GFF5188	0.71	+0.9
5,184,638	+		GFF5188	0.71	-1.7
5,184,661	+		GFF5188	0.72	-0.5
5,184,674	+		GFF5188	0.73	-1.6
5,184,675	+		GFF5188	0.73	+0.1
5,184,675	+		GFF5188	0.73	+0.6
5,184,675	+		GFF5188	0.73	-0.0
5,184,682	-		GFF5188	0.73	-1.7
5,184,683	-		GFF5188	0.73	+0.1
5,184,684	+		GFF5188	0.73	-0.0
5,184,684	+		GFF5188	0.73	+0.2
5,184,684	+		GFF5188	0.73	-0.5
5,184,684	+		GFF5188	0.73	-0.2
5,184,684	+		GFF5188	0.73	+0.5
5,184,684	+		GFF5188	0.73	-0.4
5,184,684	+		GFF5188	0.73	-1.9
5,184,684	+		GFF5188	0.73	-1.1
5,184,684	+		GFF5188	0.73	+0.9
5,184,684	+		GFF5188	0.73	+0.3
5,184,684	+		GFF5188	0.73	-1.7
5,184,684	+		GFF5188	0.73	+0.2
5,184,684	+		GFF5188	0.73	-0.6
5,184,684	+		GFF5188	0.73	+0.3
5,184,684	+		GFF5188	0.73	+0.3
5,184,692	-		GFF5188	0.73	+0.5
5,184,692	-		GFF5188	0.73	-1.0
5,184,692	-		GFF5188	0.73	-1.9
5,184,692	-		GFF5188	0.73	+0.6
5,184,692	-		GFF5188	0.73	-1.2
5,184,692	-		GFF5188	0.73	-0.6
5,184,692	-		GFF5188	0.73	+0.8
5,184,692	-		GFF5188	0.73	-0.5
5,184,693	+		GFF5188	0.73	-0.0
5,184,700	+		GFF5188	0.73	-1.2
5,184,720	+		GFF5188	0.74	+1.3
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5,184,765	-		GFF5188	0.76	+0.7
5,184,789	-		GFF5188	0.76	-0.1
5,184,789	-		GFF5188	0.76	+1.2
5,184,797	-		GFF5188	0.77	+1.3
5,184,820	-		GFF5188	0.77	+0.7
5,184,849	+		GFF5188	0.78	-1.7
5,184,849	+		GFF5188	0.78	+0.1
5,184,849	+		GFF5188	0.78	-0.1
5,184,849	+		GFF5188	0.78	-0.2
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5,184,857	-		GFF5188	0.79	-1.6
5,184,857	-		GFF5188	0.79	+1.0
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5,184,859	+		GFF5188	0.79	+0.6
5,184,859	+		GFF5188	0.79	-1.1
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5,184,900	-		GFF5188	0.80	+0.3
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5,184,926	-		GFF5188	0.81	-1.1
5,184,926	-		GFF5188	0.81	-0.5
5,184,934	+		GFF5188	0.81	-0.7
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5,184,954	-		GFF5188	0.82	-0.7
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5,184,961	-		GFF5188	0.82	+0.8
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5,185,026	-		GFF5188	0.84	-0.1
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5,185,070	+		GFF5188	0.86	-0.3
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5,185,139	+		GFF5188	0.88	-0.1
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5,185,155	+		GFF5188	0.88	-0.0
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5,185,199	+		GFF5188	0.90	-1.2
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5,185,213	+				+0.7
5,185,223	+				-1.0
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5,185,223	+				+0.3
5,185,223	+				-0.2
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5,185,223	+				+1.3
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5,185,223	+				-0.4
5,185,223	+				-0.2
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5,185,223	+				-0.9
5,185,223	+				+0.3
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5,185,223	+				-0.2
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5,185,223	+				-0.1
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5,185,223	+				+0.8
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5,185,223	+				-1.7
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5,185,223	+				+1.5
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5,185,231	-				-0.5
5,185,231	-				-0.2
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5,185,231	-				+0.6
5,185,231	-				+0.3
5,185,231	-				-1.9
5,185,231	-				-1.6
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5,185,231	-				-1.2
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5,185,231	-				+0.2
5,185,231	-				+0.3
5,185,231	-				-1.1
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5,185,231	-				+0.1
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5,185,231	-				+2.0
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5,185,319	-				-0.2
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5,185,401	-				-1.7
5,185,401	-				+0.6
5,185,403	+				-1.0
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5,185,411	-				+0.2
5,185,411	-				+0.1
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5,185,425	+				-0.6
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5,185,426	-				+0.1
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5,185,440	+				+0.7
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5,185,440	+				-0.8
5,185,440	+				-0.2
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5,185,440	+				+0.7
5,185,440	+				+0.2
5,185,448	-				+0.3
5,185,448	-				-2.0
5,185,448	-				-0.1
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5,185,458	+				-0.6
5,185,458	-				+0.8
5,185,458	-				-1.4
5,185,471	-				+0.4
5,185,473	+				+0.3
5,185,473	+				-0.2
5,185,494	+				+0.4
5,185,494	+				-0.5
5,185,513	+				+0.7
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5,185,533	+				+0.6
5,185,543	+				+0.2
5,185,543	+				-2.4
5,185,543	+				-0.5
5,185,543	+				+0.2
5,185,543	+				+0.1
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5,185,543	+				+0.3
5,185,551	-				-0.3
5,185,551	-				-1.6
5,185,551	-				+0.3
5,185,551	-				+0.7
5,185,551	-				-0.4
5,185,551	-				-0.2
5,185,551	-				+0.5
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5,185,553	+				+0.5
5,185,553	+				+1.0
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5,185,558	+				+0.2
5,185,566	-				+0.5
5,185,578	+				+0.3
5,185,583	+				+0.3
5,185,586	-				-2.1
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5,185,596	-				+0.8
5,185,596	-				+0.1
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5,185,810	+		GFF5189	0.48	-1.7
5,185,810	+		GFF5189	0.48	-1.7
5,185,818	-		GFF5189	0.50	+0.9
5,185,827	+		GFF5189	0.52	-1.6
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5,185,835	-		GFF5189	0.53	+0.2
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5,185,851	+		GFF5189	0.56	-2.7
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5,185,864	-		GFF5189	0.59	+0.1
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5,185,886	+		GFF5189	0.63	-1.0
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