Strain Fitness in Sphingobium sp. HT1-2 around GFF1621

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,647,599	+		GFF1620	0.44	-0.0
1,647,607	-		GFF1620	0.44	-1.3
1,647,622	-		GFF1620	0.46	-0.9
1,647,679	-		GFF1620	0.50	-0.7
1,647,686	-		GFF1620	0.51	-0.7
1,647,706	+		GFF1620	0.52	+0.3
1,647,706	+		GFF1620	0.52	+0.0
1,647,711	+		GFF1620	0.53	-1.9
1,647,711	+		GFF1620	0.53	-2.2
1,647,719	-		GFF1620	0.53	-1.7
1,647,719	-		GFF1620	0.53	-0.3
1,647,726	-		GFF1620	0.54	-0.8
1,647,747	+		GFF1620	0.55	-0.4
1,647,755	-		GFF1620	0.56	-1.1
1,647,765	+		GFF1620	0.57	-0.4
1,647,770	+		GFF1620	0.57	+0.0
1,647,770	+		GFF1620	0.57	+0.4
1,647,778	-		GFF1620	0.58	+0.8
1,647,778	-		GFF1620	0.58	+0.9
1,647,778	-		GFF1620	0.58	-0.8
1,647,800	-		GFF1620	0.60	-1.2
1,647,808	+		GFF1620	0.60	-1.2
1,647,808	+		GFF1620	0.60	-0.6
1,647,808	+		GFF1620	0.60	-1.2
1,647,816	-		GFF1620	0.61	-2.2
1,647,823	+		GFF1620	0.61	-1.0
1,647,831	-		GFF1620	0.62	-0.2
1,647,831	-		GFF1620	0.62	-0.8
1,647,840	+		GFF1620	0.63	+0.4
1,647,844	+		GFF1620	0.63	+0.4
1,647,849	+		GFF1620	0.63	+0.4
1,647,852	-		GFF1620	0.64	-0.2
1,647,852	-		GFF1620	0.64	+0.1
1,647,852	-		GFF1620	0.64	+1.5
1,647,854	+		GFF1620	0.64	+1.3
1,647,857	-		GFF1620	0.64	+0.5
1,647,857	-		GFF1620	0.64	-0.2
1,647,907	+		GFF1620	0.68	-0.0
1,647,937	+		GFF1620	0.70	-2.2
1,647,951	+		GFF1620	0.71	-1.8
1,647,951	+		GFF1620	0.71	-2.6
1,647,951	+		GFF1620	0.71	-0.4
1,647,955	+		GFF1620	0.72	-1.6
1,647,970	+		GFF1620	0.73	+0.3
1,647,973	-		GFF1620	0.73	+0.2
1,647,974	+		GFF1620	0.73	-1.2
1,647,974	+		GFF1620	0.73	-2.7
1,647,974	+		GFF1620	0.73	-0.1
1,647,980	+		GFF1620	0.74	-0.2
1,647,982	-		GFF1620	0.74	+0.5
1,647,982	-		GFF1620	0.74	+0.7
1,647,982	-		GFF1620	0.74	+1.3
1,647,982	-		GFF1620	0.74	+1.1
1,647,992	+		GFF1620	0.75	+0.1
1,647,994	+		GFF1620	0.75	+0.8
1,647,998	+		GFF1620	0.75	-1.6
1,647,998	+		GFF1620	0.75	-0.2
1,647,998	+		GFF1620	0.75	-0.9
1,647,998	+		GFF1620	0.75	-0.8
1,647,998	+		GFF1620	0.75	-1.7
1,647,999	+		GFF1620	0.75	-0.4
1,648,000	-		GFF1620	0.75	+0.6
1,648,006	-		GFF1620	0.76	-0.2
1,648,006	-		GFF1620	0.76	-0.4
1,648,006	-		GFF1620	0.76	-0.2
1,648,006	-		GFF1620	0.76	+0.5
1,648,006	-		GFF1620	0.76	-1.1
1,648,014	-		GFF1620	0.76	-1.5
1,648,021	+		GFF1620	0.77	-1.1
1,648,032	+		GFF1620	0.78	+0.3
1,648,050	-		GFF1620	0.79	-1.0
1,648,073	-		GFF1620	0.81	-1.8
1,648,105	+		GFF1620	0.84	-2.0
1,648,105	+		GFF1620	0.84	-0.7
1,648,105	+		GFF1620	0.84	-0.8
1,648,110	+		GFF1620	0.84	-0.6
1,648,113	-		GFF1620	0.84	-0.9
1,648,118	-		GFF1620	0.85	-0.8
1,648,118	-		GFF1620	0.85	-0.2
1,648,120	+		GFF1620	0.85	-1.0
1,648,121	+		GFF1620	0.85	+0.2
1,648,140	-		GFF1620	0.86	-1.3
1,648,145	-		GFF1620	0.87	+0.1
1,648,155	+		GFF1620	0.88	-0.9
1,648,155	+		GFF1620	0.88	-1.0
1,648,155	+		GFF1620	0.88	-0.7
1,648,155	+		GFF1620	0.88	+0.3
1,648,162	-		GFF1620	0.88	-0.0
1,648,163	-		GFF1620	0.88	-0.7
1,648,163	-		GFF1620	0.88	+0.2
1,648,163	-		GFF1620	0.88	-0.2
1,648,163	-		GFF1620	0.88	+1.4
1,648,173	-		GFF1620	0.89	-0.9
1,648,173	-		GFF1620	0.89	-1.4
1,648,174	+		GFF1620	0.89	-0.4
1,648,174	+		GFF1620	0.89	-1.6
1,648,174	+		GFF1620	0.89	-0.5
1,648,182	-		GFF1620	0.90	+0.4
1,648,182	-		GFF1620	0.90	+0.5
1,648,182	-		GFF1620	0.90	-1.4
1,648,182	-		GFF1620	0.90	-0.4
1,648,182	-		GFF1620	0.90	-0.6
1,648,192	-				+0.8
1,648,204	-				+0.3
1,648,210	-				-1.2
1,648,230	-				-0.4
1,648,250	-				-2.2
1,648,273	+				-0.0
1,648,273	+				-1.5
1,648,273	+				-0.1
1,648,291	-				-0.3
1,648,298	+				+0.0
1,648,306	-				+0.6
1,648,328	-				-1.4
1,648,343	-				-0.3
1,648,353	+				-0.7
1,648,358	+				-0.8
1,648,361	-				+0.2
1,648,375	+				-0.0
1,648,375	+				-0.8
1,648,383	-				-1.7
1,648,383	-				-1.6
1,648,399	+				+0.1
1,648,410	+				+0.9
1,648,410	+				-0.6
1,648,410	+				-0.4
1,648,410	+				-0.6
1,648,410	+				+0.5
1,648,410	+				-1.8
1,648,410	+				-0.8
1,648,410	+				+0.3
1,648,418	-				-1.5
1,648,418	-				-0.9
1,648,418	-				+0.3
1,648,418	-				-0.1
1,648,418	-				+1.0
1,648,418	-				-0.5
1,648,418	-				+1.7
1,648,418	-				-1.1
1,648,418	-				+0.9
1,648,418	-				-0.7
1,648,418	-				-1.5
1,648,435	+				-2.0
1,648,441	-				-1.4
1,648,456	+				-0.6
1,648,520	+				-0.5
1,648,522	-				+0.2
1,648,528	-				+0.6
1,651,203	+				-0.4
1,651,236	+				+0.3
1,651,250	+				-0.7
1,651,257	+				-0.6
1,651,257	+				-0.4
1,651,257	+				+0.3
1,651,257	+				+0.1
1,651,258	-				-0.2
1,651,265	-				+0.8
1,651,314	+				+0.5
1,651,353	-				+0.8
1,651,372	+		GFF1622	0.14	+0.3
1,651,372	+		GFF1622	0.14	-1.0
1,651,372	+		GFF1622	0.14	+0.6
1,651,372	+		GFF1622	0.14	-1.0
1,651,372	+		GFF1622	0.14	-0.2
1,651,372	+		GFF1622	0.14	+0.9
1,651,372	+		GFF1622	0.14	-0.6
1,651,372	+		GFF1622	0.14	-2.6
1,651,372	+		GFF1622	0.14	+0.4
1,651,372	+		GFF1622	0.14	+1.5
1,651,372	+		GFF1622	0.14	+0.5
1,651,372	+		GFF1622	0.14	+0.6
1,651,372	+		GFF1622	0.14	+1.3
1,651,380	-		GFF1622	0.17	-0.4
1,651,380	-		GFF1622	0.17	-0.4
1,651,380	-		GFF1622	0.17	+1.3
1,651,380	-		GFF1622	0.17	+0.7
1,651,380	-		GFF1622	0.17	+0.2
1,651,380	-		GFF1622	0.17	-0.6
1,651,380	-		GFF1622	0.17	+0.0
1,651,380	-		GFF1622	0.17	+0.5
1,651,380	-		GFF1622	0.17	-0.7
1,651,390	+		GFF1622	0.20	-1.4
1,651,390	+		GFF1622	0.20	+0.7
1,651,396	-		GFF1622	0.21	+1.4
1,651,398	-		GFF1622	0.22	-1.0
1,651,398	-		GFF1622	0.22	-0.6
1,651,398	-		GFF1622	0.22	-0.6
1,651,398	-		GFF1622	0.22	+0.6
1,651,398	-		GFF1622	0.22	+0.6
1,651,398	-		GFF1622	0.22	-1.1
1,651,410	+		GFF1622	0.25	-0.1
1,651,417	+		GFF1622	0.27	+0.3
1,651,427	+		GFF1622	0.30	+0.7
1,651,481	+		GFF1622	0.46	+0.0
1,651,481	+		GFF1622	0.46	-0.1
1,651,503	-		GFF1622	0.52	-0.5
1,651,512	+		GFF1622	0.55	-0.3
1,651,512	+		GFF1622	0.55	-2.8
1,651,520	+		GFF1622	0.57	+0.5
1,651,520	+		GFF1622	0.57	+0.1
1,651,539	+		GFF1622	0.62	-0.2
1,651,547	+		GFF1622	0.65	-1.0
1,651,550	-		GFF1622	0.66	+0.9
1,651,565	+		GFF1622	0.70	+0.3
1,651,565	+		GFF1622	0.70	-1.2
1,651,577	-		GFF1622	0.73	-0.5
1,651,579	-		GFF1622	0.74	+0.2
1,651,589	+		GFF1622	0.77	-1.5
1,651,589	+		GFF1622	0.77	-0.5
1,651,614	+		GFF1622	0.84	-0.1
1,651,614	+		GFF1622	0.84	+0.1
1,651,663	+				+1.1
1,651,666	-				-0.8
1,651,671	-				+1.1
1,651,671	-				-0.1
1,651,671	-				-0.2
1,651,682	-				-1.2
1,651,684	+				-0.3
1,651,706	+				-1.3
1,651,711	+				-0.1
1,651,724	-				-1.5
1,651,725	-				-2.0
1,651,735	-				+0.3
1,651,742	-				-0.4
1,651,762	-				-1.1
1,651,766	-				+1.0
1,651,832	+		GFF1623	0.11	+1.1
1,651,832	+		GFF1623	0.11	-0.5
1,651,838	-		GFF1623	0.11	-0.8
1,651,845	-		GFF1623	0.12	+0.7
1,651,847	+		GFF1623	0.12	-2.0
1,651,850	-		GFF1623	0.12	-1.8
1,651,852	-		GFF1623	0.12	-1.2
1,651,853	-		GFF1623	0.12	-1.4
1,651,928	+		GFF1623	0.19	-0.4
1,651,933	+		GFF1623	0.20	+0.6
1,651,941	-		GFF1623	0.20	-0.7
1,651,976	+		GFF1623	0.23	-0.6
1,651,981	+		GFF1623	0.24	+0.1
1,651,984	-		GFF1623	0.24	-0.4
1,651,984	-		GFF1623	0.24	+0.4
1,651,984	-		GFF1623	0.24	-0.7
1,651,984	-		GFF1623	0.24	+0.5
1,651,997	-		GFF1623	0.25	-0.6
1,652,036	+		GFF1623	0.29	-1.3
1,652,042	-		GFF1623	0.29	-0.6
1,652,082	+		GFF1623	0.33	-1.0
1,652,090	-		GFF1623	0.34	+0.1
1,652,102	+		GFF1623	0.35	+0.2
1,652,108	+		GFF1623	0.35	-0.7
1,652,108	+		GFF1623	0.35	-1.5
1,652,183	-		GFF1623	0.42	+1.2
1,652,215	-		GFF1623	0.45	+0.1
1,652,280	-		GFF1623	0.51	+0.3
1,652,291	-		GFF1623	0.52	-1.0
1,652,292	-		GFF1623	0.52	-1.2
1,652,293	-		GFF1623	0.52	+0.3
1,652,316	+		GFF1623	0.54	-0.7