Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4473 and GFF4474 are separated by 125 nucleotides GFF4474 and GFF4475 are separated by 11 nucleotides
GFF4473 - hypothetical protein, at 4,466,076 to 4,466,291
GFF4473
GFF4474 - hypothetical protein, at 4,466,417 to 4,466,809
GFF4474
GFF4475 - Copper/silver efflux RND transporter, transmembrane protein CusA, at 4,466,821 to 4,469,961
GFF4475
Position (kb) 4466
4467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4465.420 kb on + strand at 4465.449 kb on + strand at 4465.450 kb on + strand at 4465.450 kb on + strand at 4465.450 kb on + strand at 4465.475 kb on + strand at 4465.505 kb on + strand at 4465.515 kb on + strand at 4465.515 kb on - strand at 4465.521 kb on + strand at 4465.523 kb on - strand at 4465.535 kb on - strand at 4465.562 kb on - strand at 4465.590 kb on - strand at 4465.590 kb on - strand at 4465.610 kb on - strand at 4465.662 kb on + strand at 4465.682 kb on + strand at 4465.682 kb on + strand at 4465.688 kb on + strand at 4465.690 kb on - strand at 4465.690 kb on - strand at 4465.690 kb on - strand at 4465.692 kb on + strand at 4465.692 kb on + strand at 4465.722 kb on - strand at 4465.726 kb on - strand at 4465.726 kb on - strand at 4465.757 kb on + strand at 4465.757 kb on + strand at 4465.765 kb on - strand at 4465.770 kb on - strand at 4465.770 kb on - strand at 4465.770 kb on - strand at 4465.770 kb on - strand at 4465.779 kb on - strand at 4465.817 kb on + strand at 4465.837 kb on + strand at 4465.860 kb on - strand at 4465.880 kb on + strand at 4465.897 kb on - strand at 4465.904 kb on + strand at 4465.904 kb on + strand at 4465.905 kb on + strand at 4465.912 kb on - strand at 4465.913 kb on - strand at 4465.926 kb on + strand at 4465.926 kb on - strand at 4465.947 kb on - strand at 4465.949 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.955 kb on + strand at 4465.957 kb on - strand at 4465.963 kb on - strand at 4465.963 kb on - strand at 4465.963 kb on - strand at 4465.963 kb on - strand at 4465.965 kb on + strand at 4465.965 kb on + strand at 4465.965 kb on + strand at 4465.965 kb on + strand at 4465.973 kb on - strand at 4465.973 kb on - strand at 4465.973 kb on - strand at 4465.973 kb on - strand at 4465.978 kb on - strand at 4465.983 kb on - strand at 4465.983 kb on - strand at 4465.996 kb on + strand at 4466.003 kb on + strand at 4466.003 kb on + strand at 4466.003 kb on + strand at 4466.003 kb on + strand at 4466.003 kb on + strand at 4466.004 kb on - strand at 4466.004 kb on - strand at 4466.004 kb on - strand at 4466.004 kb on - strand at 4466.008 kb on + strand at 4466.011 kb on - strand at 4466.011 kb on - strand at 4466.011 kb on - strand at 4466.021 kb on - strand at 4466.023 kb on + strand at 4466.023 kb on + strand at 4466.031 kb on - strand at 4466.031 kb on - strand at 4466.144 kb on - strand, within GFF4473 at 4466.184 kb on + strand, within GFF4473 at 4466.226 kb on - strand, within GFF4473 at 4466.226 kb on - strand, within GFF4473 at 4466.271 kb on + strand at 4466.271 kb on + strand at 4466.279 kb on - strand at 4466.316 kb on + strand at 4466.329 kb on - strand at 4466.343 kb on + strand at 4466.348 kb on - strand at 4466.348 kb on - strand at 4466.358 kb on + strand at 4466.358 kb on + strand at 4466.366 kb on - strand at 4466.366 kb on - strand at 4466.378 kb on + strand at 4466.444 kb on - strand at 4466.467 kb on - strand, within GFF4474 at 4466.470 kb on + strand, within GFF4474 at 4466.492 kb on + strand, within GFF4474 at 4466.494 kb on + strand, within GFF4474 at 4466.494 kb on + strand, within GFF4474 at 4466.502 kb on - strand, within GFF4474 at 4466.523 kb on + strand, within GFF4474 at 4466.523 kb on + strand, within GFF4474 at 4466.526 kb on - strand, within GFF4474 at 4466.531 kb on - strand, within GFF4474 at 4466.531 kb on - strand, within GFF4474 at 4466.531 kb on - strand, within GFF4474 at 4466.531 kb on - strand, within GFF4474 at 4466.575 kb on + strand, within GFF4474 at 4466.583 kb on - strand, within GFF4474 at 4466.628 kb on + strand, within GFF4474 at 4466.635 kb on - strand, within GFF4474 at 4466.652 kb on + strand, within GFF4474 at 4466.703 kb on + strand, within GFF4474 at 4466.762 kb on + strand, within GFF4474 at 4466.762 kb on + strand, within GFF4474 at 4466.762 kb on + strand, within GFF4474 at 4466.770 kb on - strand at 4466.775 kb on - strand at 4466.782 kb on + strand at 4466.789 kb on + strand at 4466.790 kb on - strand at 4466.790 kb on - strand at 4466.797 kb on - strand at 4466.797 kb on - strand at 4466.819 kb on - strand at 4466.819 kb on - strand at 4466.848 kb on - strand at 4466.854 kb on - strand at 4466.869 kb on - strand at 4466.905 kb on + strand at 4466.938 kb on - strand at 4466.950 kb on + strand at 4466.958 kb on + strand at 4466.958 kb on + strand at 4466.958 kb on + strand at 4467.046 kb on - strand at 4467.063 kb on + strand at 4467.068 kb on + strand at 4467.071 kb on - strand at 4467.076 kb on - strand at 4467.085 kb on + strand at 4467.093 kb on - strand at 4467.102 kb on + strand at 4467.110 kb on - strand at 4467.110 kb on - strand at 4467.110 kb on - strand at 4467.110 kb on - strand at 4467.110 kb on - strand at 4467.110 kb on - strand at 4467.110 kb on - strand at 4467.174 kb on + strand, within GFF4475 at 4467.180 kb on + strand, within GFF4475 at 4467.182 kb on - strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.198 kb on + strand, within GFF4475 at 4467.206 kb on - strand, within GFF4475 at 4467.206 kb on - strand, within GFF4475 at 4467.206 kb on - strand, within GFF4475 at 4467.206 kb on - strand, within GFF4475 at 4467.206 kb on - strand, within GFF4475 at 4467.206 kb on - strand, within GFF4475 at 4467.262 kb on + strand, within GFF4475 at 4467.262 kb on - strand, within GFF4475 at 4467.265 kb on - strand, within GFF4475 at 4467.270 kb on - strand, within GFF4475 at 4467.270 kb on - strand, within GFF4475 at 4467.270 kb on - strand, within GFF4475 at 4467.270 kb on - strand, within GFF4475 at 4467.275 kb on + strand, within GFF4475 at 4467.286 kb on + strand, within GFF4475 at 4467.296 kb on + strand, within GFF4475 at 4467.296 kb on + strand, within GFF4475 at 4467.296 kb on + strand, within GFF4475 at 4467.296 kb on + strand, within GFF4475 at 4467.304 kb on - strand, within GFF4475 at 4467.304 kb on - strand, within GFF4475 at 4467.304 kb on - strand, within GFF4475 at 4467.306 kb on + strand, within GFF4475 at 4467.309 kb on - strand, within GFF4475 at 4467.319 kb on - strand, within GFF4475 at 4467.324 kb on - strand, within GFF4475 at 4467.359 kb on + strand, within GFF4475 at 4467.371 kb on - strand, within GFF4475 at 4467.379 kb on - strand, within GFF4475 at 4467.381 kb on + strand, within GFF4475 at 4467.381 kb on + strand, within GFF4475 at 4467.381 kb on + strand, within GFF4475 at 4467.389 kb on - strand, within GFF4475 at 4467.389 kb on - strand, within GFF4475 at 4467.389 kb on - strand, within GFF4475 at 4467.389 kb on - strand, within GFF4475 at 4467.389 kb on - strand, within GFF4475 at 4467.389 kb on - strand, within GFF4475 at 4467.395 kb on + strand, within GFF4475 at 4467.395 kb on + strand, within GFF4475 at 4467.397 kb on + strand, within GFF4475 at 4467.402 kb on + strand, within GFF4475 at 4467.402 kb on + strand, within GFF4475 at 4467.402 kb on + strand, within GFF4475 at 4467.402 kb on + strand, within GFF4475 at 4467.402 kb on + strand, within GFF4475 at 4467.403 kb on - strand, within GFF4475 at 4467.410 kb on - strand, within GFF4475 at 4467.410 kb on - strand, within GFF4475 at 4467.410 kb on - strand, within GFF4475 at 4467.413 kb on + strand, within GFF4475 at 4467.413 kb on + strand, within GFF4475 at 4467.439 kb on + strand, within GFF4475 at 4467.459 kb on + strand, within GFF4475 at 4467.465 kb on + strand, within GFF4475 at 4467.485 kb on + strand, within GFF4475 at 4467.488 kb on - strand, within GFF4475 at 4467.488 kb on - strand, within GFF4475 at 4467.488 kb on - strand, within GFF4475 at 4467.505 kb on - strand, within GFF4475 at 4467.526 kb on - strand, within GFF4475 at 4467.528 kb on - strand, within GFF4475 at 4467.536 kb on - strand, within GFF4475 at 4467.545 kb on + strand, within GFF4475 at 4467.553 kb on - strand, within GFF4475 at 4467.555 kb on + strand, within GFF4475 at 4467.558 kb on + strand, within GFF4475 at 4467.558 kb on + strand, within GFF4475 at 4467.563 kb on + strand, within GFF4475 at 4467.563 kb on - strand, within GFF4475 at 4467.566 kb on - strand, within GFF4475 at 4467.566 kb on - strand, within GFF4475 at 4467.566 kb on - strand, within GFF4475 at 4467.569 kb on + strand, within GFF4475 at 4467.569 kb on + strand, within GFF4475 at 4467.569 kb on + strand, within GFF4475 at 4467.582 kb on + strand, within GFF4475 at 4467.582 kb on + strand, within GFF4475 at 4467.582 kb on + strand, within GFF4475 at 4467.590 kb on - strand, within GFF4475 at 4467.590 kb on - strand, within GFF4475 at 4467.590 kb on - strand, within GFF4475 at 4467.592 kb on + strand, within GFF4475 at 4467.609 kb on + strand, within GFF4475 at 4467.614 kb on + strand, within GFF4475 at 4467.617 kb on - strand, within GFF4475 at 4467.626 kb on - strand, within GFF4475 at 4467.626 kb on - strand, within GFF4475 at 4467.634 kb on - strand, within GFF4475 at 4467.639 kb on + strand, within GFF4475 at 4467.676 kb on + strand, within GFF4475 at 4467.676 kb on + strand, within GFF4475 at 4467.684 kb on - strand, within GFF4475 at 4467.750 kb on + strand, within GFF4475 at 4467.804 kb on - strand, within GFF4475
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,465,420 + +0.6 4,465,449 + +0.4 4,465,450 + +1.0 4,465,450 + +1.3 4,465,450 + -0.6 4,465,475 + +1.2 4,465,505 + +0.4 4,465,515 + +0.2 4,465,515 - +0.6 4,465,521 + -0.0 4,465,523 - +0.0 4,465,535 - -0.9 4,465,562 - -0.6 4,465,590 - -0.6 4,465,590 - -0.6 4,465,610 - +1.5 4,465,662 + +0.3 4,465,682 + -0.8 4,465,682 + +0.0 4,465,688 + +1.0 4,465,690 - -0.3 4,465,690 - -1.1 4,465,690 - -1.7 4,465,692 + -0.1 4,465,692 + +0.0 4,465,722 - -0.6 4,465,726 - +0.2 4,465,726 - -2.0 4,465,757 + -0.3 4,465,757 + +0.6 4,465,765 - -0.9 4,465,770 - -0.7 4,465,770 - +1.2 4,465,770 - +0.0 4,465,770 - +0.9 4,465,779 - -1.7 4,465,817 + +1.6 4,465,837 + +0.1 4,465,860 - +0.4 4,465,880 + +0.8 4,465,897 - +0.2 4,465,904 + +0.1 4,465,904 + -0.9 4,465,905 + +0.2 4,465,912 - -1.6 4,465,913 - -0.8 4,465,926 + -0.4 4,465,926 - +0.8 4,465,947 - +0.4 4,465,949 + +1.2 4,465,955 + -2.8 4,465,955 + -1.4 4,465,955 + +1.2 4,465,955 + +1.4 4,465,955 + +0.4 4,465,955 + -0.1 4,465,955 + +0.2 4,465,955 + +0.5 4,465,955 + +0.4 4,465,957 - -0.6 4,465,963 - +0.6 4,465,963 - -1.1 4,465,963 - +0.1 4,465,963 - -0.7 4,465,965 + -0.8 4,465,965 + -0.3 4,465,965 + +0.4 4,465,965 + +1.2 4,465,973 - -0.1 4,465,973 - -0.1 4,465,973 - -0.3 4,465,973 - +0.8 4,465,978 - -2.6 4,465,983 - +0.0 4,465,983 - +0.1 4,465,996 + +0.3 4,466,003 + +1.2 4,466,003 + -0.9 4,466,003 + -0.6 4,466,003 + -1.0 4,466,003 + +1.4 4,466,004 - +0.3 4,466,004 - -1.4 4,466,004 - +1.1 4,466,004 - -0.4 4,466,008 + +1.1 4,466,011 - +0.0 4,466,011 - +0.4 4,466,011 - +0.1 4,466,021 - +0.3 4,466,023 + +0.8 4,466,023 + -0.7 4,466,031 - +0.6 4,466,031 - -0.1 4,466,144 - GFF4473 0.31 +0.1 4,466,184 + GFF4473 0.50 +0.2 4,466,226 - GFF4473 0.69 -1.4 4,466,226 - GFF4473 0.69 -0.3 4,466,271 + +0.6 4,466,271 + -0.4 4,466,279 - +1.8 4,466,316 + -0.8 4,466,329 - -0.7 4,466,343 + +1.3 4,466,348 - -0.8 4,466,348 - +1.2 4,466,358 + +1.7 4,466,358 + +0.6 4,466,366 - +1.6 4,466,366 - +0.0 4,466,378 + -1.6 4,466,444 - +0.4 4,466,467 - GFF4474 0.13 -0.7 4,466,470 + GFF4474 0.13 -0.5 4,466,492 + GFF4474 0.19 -0.6 4,466,494 + GFF4474 0.20 +1.4 4,466,494 + GFF4474 0.20 -0.2 4,466,502 - GFF4474 0.22 -0.4 4,466,523 + GFF4474 0.27 +0.4 4,466,523 + GFF4474 0.27 +1.0 4,466,526 - GFF4474 0.28 +0.0 4,466,531 - GFF4474 0.29 -1.7 4,466,531 - GFF4474 0.29 +1.1 4,466,531 - GFF4474 0.29 +0.8 4,466,531 - GFF4474 0.29 +0.2 4,466,575 + GFF4474 0.40 -1.6 4,466,583 - GFF4474 0.42 +0.2 4,466,628 + GFF4474 0.54 +1.3 4,466,635 - GFF4474 0.55 +0.0 4,466,652 + GFF4474 0.60 -0.5 4,466,703 + GFF4474 0.73 -2.3 4,466,762 + GFF4474 0.88 +0.7 4,466,762 + GFF4474 0.88 +1.2 4,466,762 + GFF4474 0.88 -0.1 4,466,770 - +0.0 4,466,775 - -0.8 4,466,782 + +1.7 4,466,789 + -2.1 4,466,790 - -0.6 4,466,790 - +0.8 4,466,797 - +0.3 4,466,797 - -0.6 4,466,819 - +1.4 4,466,819 - +0.6 4,466,848 - -1.0 4,466,854 - -0.3 4,466,869 - -0.6 4,466,905 + -1.1 4,466,938 - +1.2 4,466,950 + +0.5 4,466,958 + +1.8 4,466,958 + +1.1 4,466,958 + +0.2 4,467,046 - -0.4 4,467,063 + +0.0 4,467,068 + +0.3 4,467,071 - -0.5 4,467,076 - +0.1 4,467,085 + -0.0 4,467,093 - -0.7 4,467,102 + -0.3 4,467,110 - -0.2 4,467,110 - +0.6 4,467,110 - +0.6 4,467,110 - +0.1 4,467,110 - -0.9 4,467,110 - -0.8 4,467,110 - +1.1 4,467,174 + GFF4475 0.11 +1.4 4,467,180 + GFF4475 0.11 -1.4 4,467,182 - GFF4475 0.11 +0.0 4,467,198 + GFF4475 0.12 -0.6 4,467,198 + GFF4475 0.12 -0.4 4,467,198 + GFF4475 0.12 +0.2 4,467,198 + GFF4475 0.12 +0.0 4,467,198 + GFF4475 0.12 +0.3 4,467,198 + GFF4475 0.12 +1.0 4,467,198 + GFF4475 0.12 +0.0 4,467,198 + GFF4475 0.12 +1.0 4,467,198 + GFF4475 0.12 +1.0 4,467,206 - GFF4475 0.12 +0.4 4,467,206 - GFF4475 0.12 -0.9 4,467,206 - GFF4475 0.12 +0.3 4,467,206 - GFF4475 0.12 +0.7 4,467,206 - GFF4475 0.12 +0.1 4,467,206 - GFF4475 0.12 -1.6 4,467,262 + GFF4475 0.14 -1.8 4,467,262 - GFF4475 0.14 +0.3 4,467,265 - GFF4475 0.14 -0.9 4,467,270 - GFF4475 0.14 +0.4 4,467,270 - GFF4475 0.14 +0.7 4,467,270 - GFF4475 0.14 +0.5 4,467,270 - GFF4475 0.14 -0.0 4,467,275 + GFF4475 0.14 -1.4 4,467,286 + GFF4475 0.15 -0.3 4,467,296 + GFF4475 0.15 -1.8 4,467,296 + GFF4475 0.15 +0.2 4,467,296 + GFF4475 0.15 -1.5 4,467,296 + GFF4475 0.15 +0.6 4,467,304 - GFF4475 0.15 -0.1 4,467,304 - GFF4475 0.15 +0.8 4,467,304 - GFF4475 0.15 -0.1 4,467,306 + GFF4475 0.15 +0.5 4,467,309 - GFF4475 0.16 -0.0 4,467,319 - GFF4475 0.16 +0.1 4,467,324 - GFF4475 0.16 -0.4 4,467,359 + GFF4475 0.17 +0.1 4,467,371 - GFF4475 0.18 +0.7 4,467,379 - GFF4475 0.18 +0.8 4,467,381 + GFF4475 0.18 +0.8 4,467,381 + GFF4475 0.18 -0.2 4,467,381 + GFF4475 0.18 -0.1 4,467,389 - GFF4475 0.18 -1.7 4,467,389 - GFF4475 0.18 -0.0 4,467,389 - GFF4475 0.18 -0.0 4,467,389 - GFF4475 0.18 +0.4 4,467,389 - GFF4475 0.18 -0.8 4,467,389 - GFF4475 0.18 +0.9 4,467,395 + GFF4475 0.18 -0.2 4,467,395 + GFF4475 0.18 +0.4 4,467,397 + GFF4475 0.18 +0.1 4,467,402 + GFF4475 0.18 -1.4 4,467,402 + GFF4475 0.18 +0.7 4,467,402 + GFF4475 0.18 +0.6 4,467,402 + GFF4475 0.18 -0.4 4,467,402 + GFF4475 0.18 -0.2 4,467,403 - GFF4475 0.19 +0.7 4,467,410 - GFF4475 0.19 +1.7 4,467,410 - GFF4475 0.19 -0.1 4,467,410 - GFF4475 0.19 +0.9 4,467,413 + GFF4475 0.19 -0.5 4,467,413 + GFF4475 0.19 -0.8 4,467,439 + GFF4475 0.20 +0.0 4,467,459 + GFF4475 0.20 -2.2 4,467,465 + GFF4475 0.21 +1.0 4,467,485 + GFF4475 0.21 +0.2 4,467,488 - GFF4475 0.21 -0.4 4,467,488 - GFF4475 0.21 -0.7 4,467,488 - GFF4475 0.21 +0.9 4,467,505 - GFF4475 0.22 -0.8 4,467,526 - GFF4475 0.22 -0.1 4,467,528 - GFF4475 0.23 -0.2 4,467,536 - GFF4475 0.23 -0.6 4,467,545 + GFF4475 0.23 -0.1 4,467,553 - GFF4475 0.23 -0.8 4,467,555 + GFF4475 0.23 +0.6 4,467,558 + GFF4475 0.23 +1.0 4,467,558 + GFF4475 0.23 +0.5 4,467,563 + GFF4475 0.24 +0.0 4,467,563 - GFF4475 0.24 +0.7 4,467,566 - GFF4475 0.24 +0.9 4,467,566 - GFF4475 0.24 +0.0 4,467,566 - GFF4475 0.24 -0.9 4,467,569 + GFF4475 0.24 +0.8 4,467,569 + GFF4475 0.24 +1.2 4,467,569 + GFF4475 0.24 +0.6 4,467,582 + GFF4475 0.24 +0.8 4,467,582 + GFF4475 0.24 +0.8 4,467,582 + GFF4475 0.24 +1.9 4,467,590 - GFF4475 0.24 -1.9 4,467,590 - GFF4475 0.24 -1.0 4,467,590 - GFF4475 0.24 -0.9 4,467,592 + GFF4475 0.25 +0.9 4,467,609 + GFF4475 0.25 +0.7 4,467,614 + GFF4475 0.25 -0.8 4,467,617 - GFF4475 0.25 +1.3 4,467,626 - GFF4475 0.26 +0.8 4,467,626 - GFF4475 0.26 -0.8 4,467,634 - GFF4475 0.26 -0.2 4,467,639 + GFF4475 0.26 +0.3 4,467,676 + GFF4475 0.27 +0.6 4,467,676 + GFF4475 0.27 +1.4 4,467,684 - GFF4475 0.27 +0.2 4,467,750 + GFF4475 0.30 +0.2 4,467,804 - GFF4475 0.31 -0.4
Or see this region's nucleotide sequence