Strain Fitness in Sphingobium sp. HT1-2 around GFF3959

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,999,280	+		GFF3957	0.31	+1.6
3,999,293	+		GFF3957	0.32	-1.6
3,999,317	-		GFF3957	0.35	-1.6
3,999,347	-		GFF3957	0.39	-0.2
3,999,400	+		GFF3957	0.46	+0.7
3,999,401	+		GFF3957	0.46	-0.3
3,999,407	-		GFF3957	0.47	-1.7
3,999,407	-		GFF3957	0.47	-0.8
3,999,407	-		GFF3957	0.47	-0.3
3,999,408	-		GFF3957	0.47	-1.6
3,999,443	+		GFF3957	0.52	-0.4
3,999,451	-		GFF3957	0.53	+0.5
3,999,451	-		GFF3957	0.53	+0.7
3,999,456	-		GFF3957	0.53	-1.2
3,999,456	-		GFF3957	0.53	-1.1
3,999,485	+		GFF3957	0.57	-0.3
3,999,503	-		GFF3957	0.59	-0.9
3,999,503	-		GFF3957	0.59	-0.5
3,999,503	-		GFF3957	0.59	-0.1
3,999,503	-		GFF3957	0.59	+0.5
3,999,505	+		GFF3957	0.59	-1.4
3,999,505	+		GFF3957	0.59	-0.7
3,999,511	+		GFF3957	0.60	+0.8
3,999,513	-		GFF3957	0.60	+0.8
3,999,513	-		GFF3957	0.60	-0.1
3,999,537	-		GFF3957	0.63	+0.4
3,999,566	+		GFF3957	0.67	-1.3
3,999,600	+		GFF3957	0.72	-0.1
3,999,601	+		GFF3957	0.72	-1.9
3,999,617	+		GFF3957	0.74	-1.4
3,999,629	-		GFF3957	0.75	-0.4
3,999,667	+		GFF3957	0.80	+0.1
3,999,809	+				+0.5
3,999,810	-				-1.7
3,999,819	+				+1.5
3,999,840	+				-2.0
3,999,858	+				-0.1
3,999,875	+		GFF3958	0.12	-1.0
3,999,910	-		GFF3958	0.19	+1.6
3,999,911	+		GFF3958	0.20	+0.1
3,999,912	+		GFF3958	0.20	-0.7
3,999,912	+		GFF3958	0.20	-1.2
3,999,912	+		GFF3958	0.20	-1.1
3,999,912	+		GFF3958	0.20	+0.8
3,999,912	+		GFF3958	0.20	-0.1
3,999,920	-		GFF3958	0.22	-0.5
3,999,921	+		GFF3958	0.22	-0.7
3,999,924	-		GFF3958	0.23	-0.3
3,999,924	-		GFF3958	0.23	-0.4
3,999,933	-		GFF3958	0.24	-0.1
3,999,933	-		GFF3958	0.24	-1.1
3,999,933	-		GFF3958	0.24	+0.3
3,999,951	+		GFF3958	0.28	+0.6
3,999,960	-		GFF3958	0.30	-1.6
3,999,962	+		GFF3958	0.31	+0.2
3,999,965	-		GFF3958	0.31	+0.3
3,999,974	+		GFF3958	0.33	-0.2
3,999,974	+		GFF3958	0.33	-1.5
3,999,977	-		GFF3958	0.34	-1.2
3,999,977	-		GFF3958	0.34	-0.1
3,999,993	+		GFF3958	0.37	+0.2
4,000,000	+		GFF3958	0.39	-1.2
4,000,001	-		GFF3958	0.39	+0.1
4,000,008	-		GFF3958	0.41	-0.3
4,000,008	-		GFF3958	0.41	+0.7
4,000,012	-		GFF3958	0.42	-0.5
4,000,012	-		GFF3958	0.42	-0.7
4,000,017	+		GFF3958	0.43	-0.1
4,000,017	+		GFF3958	0.43	-1.6
4,000,018	-		GFF3958	0.43	-0.2
4,000,019	+		GFF3958	0.43	-1.4
4,000,025	+		GFF3958	0.44	-1.1
4,000,025	-		GFF3958	0.44	-1.4
4,000,025	-		GFF3958	0.44	-0.1
4,000,025	-		GFF3958	0.44	+1.1
4,000,033	+		GFF3958	0.46	+0.7
4,000,041	-		GFF3958	0.48	-2.3
4,000,043	+		GFF3958	0.48	-1.3
4,000,051	+		GFF3958	0.50	-0.8
4,000,051	-		GFF3958	0.50	+0.1
4,000,052	+		GFF3958	0.50	-1.3
4,000,052	+		GFF3958	0.50	-0.9
4,000,059	-		GFF3958	0.52	+1.6
4,000,059	-		GFF3958	0.52	-0.8
4,000,069	+		GFF3958	0.54	-0.9
4,000,069	+		GFF3958	0.54	+0.2
4,000,069	+		GFF3958	0.54	-1.5
4,000,069	+		GFF3958	0.54	+0.5
4,000,077	-		GFF3958	0.56	-0.0
4,000,077	-		GFF3958	0.56	-0.2
4,000,077	-		GFF3958	0.56	-0.3
4,000,089	-		GFF3958	0.58	-1.4
4,000,102	+		GFF3958	0.61	+1.1
4,000,104	-		GFF3958	0.61	-1.1
4,000,109	-		GFF3958	0.63	+0.5
4,000,147	+		GFF3958	0.71	-0.4
4,000,152	+		GFF3958	0.72	+0.1
4,000,152	+		GFF3958	0.72	+0.0
4,000,152	+		GFF3958	0.72	-2.3
4,000,160	-		GFF3958	0.74	+0.3
4,000,160	-		GFF3958	0.74	-0.2
4,000,160	-		GFF3958	0.74	-0.2
4,000,160	-		GFF3958	0.74	+0.9
4,000,160	-		GFF3958	0.74	-0.6
4,000,160	-		GFF3958	0.74	+0.5
4,000,160	-		GFF3958	0.74	-0.2
4,000,160	-		GFF3958	0.74	+1.1
4,000,182	+		GFF3958	0.78	-2.7
4,000,182	+		GFF3958	0.78	+0.5
4,000,182	+		GFF3958	0.78	-1.4
4,000,190	-		GFF3958	0.80	+0.6
4,000,190	-		GFF3958	0.80	-0.6
4,000,190	-		GFF3958	0.80	+0.3
4,000,200	+		GFF3958	0.82	-1.8
4,000,228	+		GFF3958	0.88	-0.3
4,000,236	-				+0.5
4,000,241	+				-0.7
4,000,241	+				-0.4
4,000,245	+				-1.1
4,000,254	+				+0.4
4,000,254	-				+0.1
4,000,254	-				-1.1
4,000,260	+				+0.5
4,000,264	+				+1.0
4,000,264	+				-0.2
4,000,264	+				+0.7
4,000,264	-				-1.5
4,000,272	-				+0.0
4,000,274	-				-0.4
4,000,279	-				-0.4
4,000,292	+				-0.3
4,000,309	+				+0.4
4,000,310	+				-1.0
4,000,312	+				+0.3
4,000,312	+				-1.2
4,000,312	+				-1.0
4,000,317	+				+0.7
4,000,317	+				+1.5
4,000,318	-				+0.3
4,000,320	-				+1.1
4,000,320	-				-0.1
4,000,320	-				-0.2
4,000,320	-				-2.1
4,000,320	-				+0.8
4,000,320	-				-2.7
4,000,320	-				+0.1
4,000,320	-				-0.5
4,000,320	-				+0.9
4,000,320	-				-0.4
4,000,322	+				+0.0
4,000,322	+				+1.3
4,000,322	+				+0.5
4,000,325	-				-0.4
4,000,325	-				-0.4
4,000,338	-		GFF3959	0.12	-1.1
4,000,339	-		GFF3959	0.12	+0.7
4,000,361	-		GFF3959	0.17	+0.5
4,000,379	+		GFF3959	0.20	-0.8
4,000,387	-		GFF3959	0.22	-0.0
4,000,392	-		GFF3959	0.23	-0.6
4,000,400	+		GFF3959	0.24	+0.6
4,000,400	+		GFF3959	0.24	-0.6
4,000,408	+		GFF3959	0.26	-0.5
4,000,412	-		GFF3959	0.27	+0.5
4,000,415	+		GFF3959	0.28	+0.7
4,000,423	+		GFF3959	0.29	-0.7
4,000,423	-		GFF3959	0.29	-0.8
4,000,425	+		GFF3959	0.30	-0.0
4,000,431	-		GFF3959	0.31	+0.1
4,000,431	-		GFF3959	0.31	-0.5
4,000,454	+		GFF3959	0.35	+0.4
4,000,454	+		GFF3959	0.35	-0.5
4,000,454	+		GFF3959	0.35	+1.1
4,000,454	+		GFF3959	0.35	+0.4
4,000,454	+		GFF3959	0.35	+0.8
4,000,454	+		GFF3959	0.35	-2.0
4,000,454	+		GFF3959	0.35	-0.7
4,000,454	+		GFF3959	0.35	-2.0
4,000,454	+		GFF3959	0.35	+0.5
4,000,455	-		GFF3959	0.36	-0.1
4,000,455	-		GFF3959	0.36	+0.1
4,000,462	-		GFF3959	0.37	-0.5
4,000,501	+		GFF3959	0.45	-1.3
4,000,509	-		GFF3959	0.46	-0.2
4,000,509	-		GFF3959	0.46	+0.8
4,000,510	-		GFF3959	0.47	+0.4
4,000,513	+		GFF3959	0.47	+0.3
4,000,524	-		GFF3959	0.49	-2.2
4,000,549	+		GFF3959	0.54	-1.6
4,000,549	+		GFF3959	0.54	-0.9
4,000,549	+		GFF3959	0.54	+0.1
4,000,549	+		GFF3959	0.54	-1.4
4,000,549	+		GFF3959	0.54	-0.3
4,000,551	+		GFF3959	0.55	-1.1
4,000,557	-		GFF3959	0.56	+0.2
4,000,557	-		GFF3959	0.56	+0.6
4,000,557	-		GFF3959	0.56	-1.5
4,000,557	-		GFF3959	0.56	-0.1
4,000,557	-		GFF3959	0.56	-2.4
4,000,572	+		GFF3959	0.59	-1.8
4,000,572	+		GFF3959	0.59	-1.3
4,000,578	+		GFF3959	0.60	-1.8
4,000,591	+		GFF3959	0.63	+0.8
4,000,591	+		GFF3959	0.63	+0.1
4,000,591	+		GFF3959	0.63	+0.2
4,000,612	+		GFF3959	0.67	-1.2
4,000,617	+		GFF3959	0.68	-0.3
4,000,639	+		GFF3959	0.72	+0.4
4,000,647	-		GFF3959	0.74	-0.6
4,000,685	+		GFF3959	0.82	+0.7
4,000,685	+		GFF3959	0.82	-0.0
4,000,708	-		GFF3959	0.86	-0.1
4,000,708	-		GFF3959	0.86	+0.2
4,000,730	+				+0.3
4,000,738	-				-3.0
4,000,738	-				-0.7
4,000,738	-				+0.7
4,000,738	-				+0.6
4,000,755	+				-1.2
4,000,779	+				-0.2
4,000,795	-				-0.0
4,000,804	+				-1.1
4,000,809	+				+0.2
4,000,817	+				+0.1
4,000,837	+				-0.2
4,000,837	+				-0.3
4,000,837	+				+0.3
4,000,837	+				-0.2
4,000,837	+				-1.1
4,000,837	+				+0.1
4,000,837	+				-0.4
4,000,837	+				-0.3
4,000,837	+				+1.3
4,000,837	+				-1.3
4,000,842	+				-0.3
4,000,845	-				-1.0
4,000,845	-				+1.2
4,000,845	-				-0.8
4,000,845	-				+1.0
4,000,845	-				-0.2
4,000,845	-				+0.3
4,000,845	-				+0.8
4,000,845	-				-0.4
4,000,845	-				-1.4
4,000,845	-				+1.1
4,000,847	+				+0.0
4,000,847	+				-0.5
4,000,847	+				+0.6
4,000,847	+				-1.2
4,000,850	-				-1.1
4,000,850	-				-0.6
4,000,852	+				+0.3
4,000,855	-				+0.8
4,000,855	-				+0.4
4,000,855	-				-1.4
4,000,865	+				-1.0
4,000,865	+				+0.8
4,000,868	-				-0.3
4,000,873	-				-0.8
4,000,873	-				+0.3
4,000,873	-				-1.7
4,000,886	+				-0.7
4,000,915	+				-1.3
4,000,925	-				-1.4
4,000,935	+				+0.5
4,000,945	+				-0.3
4,000,964	+				+0.3
4,000,978	-				+0.1
4,000,982	+				+0.8
4,000,990	-				+1.3
4,000,990	-				-0.2
4,000,992	+				+0.1
4,001,000	-				-0.3
4,001,038	-				+0.4
4,001,043	+				-0.5
4,001,043	+				-0.1
4,001,048	+				+0.2
4,001,049	+				-3.0
4,001,049	-				+1.5
4,001,051	-				+0.4
4,001,051	-				+0.3
4,001,055	+				+0.5
4,001,056	-				-0.6
4,001,057	-				-0.4
4,001,069	+				-0.2
4,001,082	+				-0.7
4,001,091	-				+0.2
4,001,106	-				+0.0
4,001,106	-				+1.0
4,001,106	-				+0.8
4,001,110	+				-1.3
4,001,110	+				+0.2
4,001,110	-				-1.4
4,001,111	+				-1.0
4,001,111	+				-0.6
4,001,121	+				+0.8
4,001,128	+		GFF3960	0.11	+0.6
4,001,128	+		GFF3960	0.11	-0.5
4,001,128	+		GFF3960	0.11	-1.5
4,001,128	+		GFF3960	0.11	-0.3
4,001,128	+		GFF3960	0.11	-1.1
4,001,128	+		GFF3960	0.11	+0.9
4,001,128	+		GFF3960	0.11	+1.0
4,001,131	-		GFF3960	0.12	-1.3
4,001,135	-		GFF3960	0.14	+1.3
4,001,136	-		GFF3960	0.15	-0.9
4,001,136	-		GFF3960	0.15	+1.4
4,001,136	-		GFF3960	0.15	+0.3
4,001,136	-		GFF3960	0.15	-1.2
4,001,136	-		GFF3960	0.15	+0.4
4,001,136	-		GFF3960	0.15	+0.7
4,001,136	-		GFF3960	0.15	-0.8
4,001,143	+		GFF3960	0.18	+1.3
4,001,158	+		GFF3960	0.25	-0.9
4,001,158	+		GFF3960	0.25	-0.6
4,001,192	+		GFF3960	0.40	+0.0
4,001,205	+		GFF3960	0.46	+0.6
4,001,205	+		GFF3960	0.46	-0.7
4,001,205	+		GFF3960	0.46	-0.9
4,001,213	-		GFF3960	0.50	-0.2
4,001,213	-		GFF3960	0.50	-0.4
4,001,214	+		GFF3960	0.50	-0.4
4,001,235	+		GFF3960	0.60	+0.0
4,001,240	+		GFF3960	0.62	+0.6
4,001,244	-		GFF3960	0.64	+1.3
4,001,248	-		GFF3960	0.66	+1.0
4,001,248	-		GFF3960	0.66	-2.1
4,001,250	+		GFF3960	0.67	+0.6
4,001,251	+		GFF3960	0.67	+0.9
4,001,253	-		GFF3960	0.68	+1.1
4,001,253	-		GFF3960	0.68	+0.3
4,001,258	-		GFF3960	0.70	+0.3
4,001,266	+		GFF3960	0.74	-0.2
4,001,266	+		GFF3960	0.74	+0.4
4,001,271	+		GFF3960	0.76	+0.1
4,001,286	+		GFF3960	0.83	-1.3
4,001,294	-		GFF3960	0.87	+0.7
4,001,323	+				-0.4
4,001,324	+				-1.4
4,001,324	+				+0.6
4,001,324	+				-1.3
4,001,329	+				-0.0
4,001,337	-				+0.4
4,001,371	+		GFF3961	0.15	+0.6
4,001,398	-		GFF3961	0.23	-0.5
4,001,418	+		GFF3961	0.29	-0.5
4,001,420	-		GFF3961	0.29	-1.5
4,001,420	-		GFF3961	0.29	+0.3
4,001,426	-		GFF3961	0.31	+0.7
4,001,441	+		GFF3961	0.35	+1.0
4,001,441	+		GFF3961	0.35	-2.3
4,001,456	+		GFF3961	0.40	-0.3
4,001,465	-		GFF3961	0.42	-2.1
4,001,465	-		GFF3961	0.42	-0.5
4,001,475	+		GFF3961	0.45	-0.9
4,001,475	+		GFF3961	0.45	-0.3
4,001,480	+		GFF3961	0.47	-1.7
4,001,482	+		GFF3961	0.47	-0.3
4,001,482	+		GFF3961	0.47	-1.2
4,001,483	-		GFF3961	0.48	-0.4
4,001,483	-		GFF3961	0.48	-0.3
4,001,490	-		GFF3961	0.50	-1.8
4,001,490	-		GFF3961	0.50	-2.3
4,001,500	+		GFF3961	0.52	-0.4
4,001,500	+		GFF3961	0.52	-0.7
4,001,500	+		GFF3961	0.52	+1.5
4,001,508	-		GFF3961	0.55	-0.2
4,001,508	-		GFF3961	0.55	-0.3
4,001,510	+		GFF3961	0.55	-0.1
4,001,510	+		GFF3961	0.55	-1.3
4,001,510	+		GFF3961	0.55	-1.1
4,001,510	+		GFF3961	0.55	+0.6
4,001,510	+		GFF3961	0.55	+0.3
4,001,517	+		GFF3961	0.57	+0.1
4,001,517	+		GFF3961	0.57	-0.3
4,001,518	-		GFF3961	0.58	-0.2
4,001,518	-		GFF3961	0.58	+0.5
4,001,529	+		GFF3961	0.61	+0.4
4,001,550	-		GFF3961	0.67	-0.3
4,001,552	-		GFF3961	0.68	-0.3
4,001,556	+		GFF3961	0.69	+0.1
4,001,556	+		GFF3961	0.69	-0.5
4,001,562	+		GFF3961	0.70	+0.3
4,001,562	+		GFF3961	0.70	+1.5
4,001,562	-		GFF3961	0.70	-0.4
4,001,570	-		GFF3961	0.73	-0.0
4,001,570	-		GFF3961	0.73	+0.7
4,001,578	+		GFF3961	0.75	-0.6
4,001,586	-		GFF3961	0.77	-0.1
4,001,586	-		GFF3961	0.77	+0.2
4,001,593	-		GFF3961	0.79	-0.3
4,001,603	+		GFF3961	0.82	-2.2
4,001,620	+		GFF3961	0.87	+0.1
4,001,646	+				-1.5
4,001,648	-				-0.8
4,001,653	-				-0.3
4,001,660	-				+0.6
4,001,666	-				-0.3
4,001,689	+				-0.0
4,001,709	+				-0.5
4,001,709	+				-1.3
4,001,734	-		GFF3962	0.11	-0.5
4,001,742	-		GFF3962	0.13	-1.0
4,001,770	+		GFF3962	0.20	-1.2