Strain Fitness in Sphingobium sp. HT1-2 around GFF3831

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,870,047	+				-0.4
3,870,104	-				+1.1
3,870,125	+				-0.9
3,870,125	+				-1.2
3,870,125	+				-0.6
3,870,133	-		GFF3829	0.11	+0.3
3,870,133	-		GFF3829	0.11	+0.8
3,870,133	-		GFF3829	0.11	-0.2
3,870,149	+		GFF3829	0.14	-0.3
3,870,154	+		GFF3829	0.15	-2.2
3,870,157	-		GFF3829	0.16	-1.0
3,870,162	-		GFF3829	0.17	-1.4
3,870,166	+		GFF3829	0.17	-0.2
3,870,174	-		GFF3829	0.19	+0.8
3,870,181	-		GFF3829	0.20	-0.8
3,870,199	+		GFF3829	0.24	-1.1
3,870,200	-		GFF3829	0.24	-0.4
3,870,204	+		GFF3829	0.25	-2.6
3,870,205	-		GFF3829	0.25	-0.5
3,870,207	+		GFF3829	0.26	+0.1
3,870,207	-		GFF3829	0.26	-1.2
3,870,207	-		GFF3829	0.26	+0.1
3,870,207	-		GFF3829	0.26	+0.5
3,870,212	-		GFF3829	0.27	+0.4
3,870,212	-		GFF3829	0.27	+0.1
3,870,222	+		GFF3829	0.29	-2.2
3,870,237	-		GFF3829	0.32	-0.6
3,870,265	+		GFF3829	0.37	-0.5
3,870,265	+		GFF3829	0.37	-0.4
3,870,273	-		GFF3829	0.39	-1.0
3,870,273	-		GFF3829	0.39	+0.2
3,870,273	-		GFF3829	0.39	-0.8
3,870,288	+		GFF3829	0.42	+1.4
3,870,288	+		GFF3829	0.42	+0.7
3,870,288	+		GFF3829	0.42	-1.4
3,870,288	+		GFF3829	0.42	-1.0
3,870,293	+		GFF3829	0.43	+0.6
3,870,303	+		GFF3829	0.45	+0.1
3,870,303	+		GFF3829	0.45	-0.2
3,870,311	-		GFF3829	0.47	-0.2
3,870,316	-		GFF3829	0.48	+0.7
3,870,316	-		GFF3829	0.48	+1.1
3,870,328	-		GFF3829	0.50	-1.6
3,870,338	+		GFF3829	0.52	-2.2
3,870,346	-		GFF3829	0.54	-0.7
3,870,350	+		GFF3829	0.55	-1.2
3,870,351	-		GFF3829	0.55	-0.5
3,870,357	+		GFF3829	0.56	+0.2
3,870,362	+		GFF3829	0.57	-0.2
3,870,362	+		GFF3829	0.57	+0.1
3,870,362	+		GFF3829	0.57	+0.5
3,870,362	+		GFF3829	0.57	+1.2
3,870,362	+		GFF3829	0.57	-1.8
3,870,365	-		GFF3829	0.58	-0.2
3,870,370	-		GFF3829	0.59	+0.1
3,870,370	-		GFF3829	0.59	+0.3
3,870,370	-		GFF3829	0.59	+0.0
3,870,370	-		GFF3829	0.59	+0.3
3,870,421	+		GFF3829	0.69	-2.5
3,870,429	+		GFF3829	0.71	-0.2
3,870,437	+		GFF3829	0.72	+0.2
3,870,447	+		GFF3829	0.74	-0.6
3,870,477	-		GFF3829	0.80	-0.4
3,870,507	+		GFF3829	0.86	-1.4
3,870,522	+		GFF3829	0.89	-2.1
3,870,530	-				+0.9
3,870,532	+				+0.7
3,870,538	+				-0.4
3,870,540	-				-0.3
3,870,543	+				+1.6
3,870,551	-				+0.2
3,870,551	-				+0.5
3,870,559	+				-0.0
3,870,559	+				+0.1
3,870,561	-				+0.2
3,870,567	-				+1.0
3,870,568	-				-2.6
3,870,602	+				-0.2
3,870,602	+				-2.1
3,870,602	+				+0.9
3,870,602	+				-1.5
3,870,602	+				-1.3
3,870,602	+				-1.0
3,870,602	+				-0.3
3,870,602	+				-2.0
3,870,602	+				-0.5
3,870,602	+				-1.3
3,870,602	+				+0.1
3,870,602	+				-1.4
3,870,602	+				-1.2
3,870,602	+				+1.5
3,870,602	+				-0.6
3,870,602	+				+0.1
3,870,602	+				-0.9
3,870,602	+				-0.8
3,870,602	+				+0.4
3,870,602	+				-0.1
3,870,602	+				+0.2
3,870,602	+				+0.0
3,870,602	+				+0.1
3,870,602	+				-1.4
3,870,602	+				+0.1
3,870,602	+				+0.5
3,870,610	-		GFF3830	0.11	-0.0
3,870,610	-		GFF3830	0.11	+0.3
3,870,610	-		GFF3830	0.11	-1.7
3,870,610	-		GFF3830	0.11	-0.2
3,870,610	-		GFF3830	0.11	-1.6
3,870,610	-		GFF3830	0.11	-0.2
3,870,610	-		GFF3830	0.11	-1.0
3,870,610	-		GFF3830	0.11	-1.3
3,870,610	-		GFF3830	0.11	-0.1
3,870,610	-		GFF3830	0.11	-2.1
3,870,610	-		GFF3830	0.11	-0.9
3,870,610	-		GFF3830	0.11	-1.0
3,870,610	-		GFF3830	0.11	-0.4
3,870,610	-		GFF3830	0.11	-0.2
3,870,610	-		GFF3830	0.11	-1.2
3,870,610	-		GFF3830	0.11	+0.1
3,870,610	-		GFF3830	0.11	-0.3
3,870,610	-		GFF3830	0.11	+0.7
3,870,610	-		GFF3830	0.11	+0.3
3,870,610	-		GFF3830	0.11	-1.2
3,870,610	-		GFF3830	0.11	+1.0
3,870,610	-		GFF3830	0.11	-0.6
3,870,610	-		GFF3830	0.11	+1.1
3,870,610	-		GFF3830	0.11	-1.2
3,870,624	-		GFF3830	0.15	-0.2
3,870,734	+		GFF3830	0.47	+1.6
3,870,744	+		GFF3830	0.50	-0.1
3,870,744	+		GFF3830	0.50	-0.1
3,870,744	+		GFF3830	0.50	-1.6
3,870,744	+		GFF3830	0.50	+0.3
3,870,744	+		GFF3830	0.50	-0.7
3,870,752	-		GFF3830	0.52	-1.8
3,870,752	-		GFF3830	0.52	-0.5
3,870,831	-		GFF3830	0.75	-1.2
3,870,842	+		GFF3830	0.78	-0.4
3,870,849	+		GFF3830	0.80	-2.0
3,870,849	+		GFF3830	0.80	+0.2
3,870,850	-		GFF3830	0.80	+0.2
3,870,857	-		GFF3830	0.82	+0.5
3,870,865	+		GFF3830	0.84	-0.4
3,870,873	-		GFF3830	0.87	-1.1
3,870,875	+		GFF3830	0.87	+1.0
3,870,906	-				+0.1
3,870,919	-				-1.3
3,870,926	-				+1.2
3,870,941	+				-0.9
3,870,948	+				+0.3
3,870,948	+				-0.5
3,870,948	+				-0.6
3,870,948	+				-0.5
3,870,948	+				+1.2
3,870,948	+				-1.3
3,870,948	+				-2.0
3,870,948	+				-0.7
3,870,948	+				-1.1
3,870,954	+				-1.2
3,870,956	-				-2.1
3,870,956	-				-0.3
3,870,956	-				+0.6
3,870,956	-				+0.5
3,870,956	-				-1.6
3,870,962	-				-1.8
3,871,019	+				-0.8
3,871,030	+				-1.6
3,871,032	+				-0.2
3,871,037	+				-0.5
3,871,064	-		GFF3831	0.10	-1.6
3,871,066	+		GFF3831	0.11	-0.2
3,871,074	-		GFF3831	0.16	-0.3
3,871,086	-		GFF3831	0.22	-1.1
3,871,086	-		GFF3831	0.22	+0.2
3,871,119	+		GFF3831	0.40	-1.6
3,871,220	-				-0.1
3,871,423	+		GFF3832	0.28	-1.3
3,871,486	+		GFF3832	0.37	+0.4
3,871,904	+				+1.3
3,871,998	-				-0.5
3,872,019	+				+0.6
3,872,019	+				+0.7
3,872,019	+				-0.4
3,872,022	-				+0.4
3,872,027	-				+1.4
3,872,027	-				+0.0
3,872,027	-				-0.3
3,872,029	+				-1.7
3,872,035	+				+0.2
3,872,037	-				+0.4
3,872,039	+				-0.3
3,872,043	-				+0.5
3,872,044	-				+0.6
3,872,048	+				-0.6
3,872,049	-				-1.0
3,872,049	-				+0.7
3,872,057	+				-0.8
3,872,075	-		GFF3833	0.11	-0.2
3,872,080	-		GFF3833	0.12	-1.3
3,872,081	-		GFF3833	0.12	-0.3
3,872,105	-		GFF3833	0.17	+1.1
3,872,113	+		GFF3833	0.19	+0.2
3,872,113	+		GFF3833	0.19	+0.4
3,872,113	+		GFF3833	0.19	-0.7
3,872,113	+		GFF3833	0.19	-1.1
3,872,121	-		GFF3833	0.21	-0.9
3,872,121	-		GFF3833	0.21	-0.0
3,872,121	-		GFF3833	0.21	-2.7
3,872,121	-		GFF3833	0.21	+2.3
3,872,121	-		GFF3833	0.21	-0.1
3,872,124	+		GFF3833	0.21	+1.2
3,872,131	+		GFF3833	0.23	+0.7
3,872,139	-		GFF3833	0.25	-2.2
3,872,139	-		GFF3833	0.25	+0.3
3,872,150	-		GFF3833	0.27	-1.8
3,872,170	+		GFF3833	0.32	-1.5
3,872,173	+		GFF3833	0.32	-1.0
3,872,178	-		GFF3833	0.34	+0.2
3,872,178	-		GFF3833	0.34	-0.5
3,872,192	+		GFF3833	0.37	-0.6
3,872,212	+		GFF3833	0.41	-1.3
3,872,213	+		GFF3833	0.41	-0.6
3,872,223	+		GFF3833	0.44	-0.0
3,872,224	+		GFF3833	0.44	+0.1
3,872,224	+		GFF3833	0.44	-0.2
3,872,225	-		GFF3833	0.44	+0.5