Strain Fitness in Sphingobium sp. HT1-2 around GFF3016

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,081,849	+		GFF3015	0.12	+0.2
3,081,849	-		GFF3015	0.12	+0.5
3,081,850	+		GFF3015	0.12	-1.6
3,081,853	-		GFF3015	0.12	-1.6
3,081,884	+		GFF3015	0.15	-0.2
3,081,916	+		GFF3015	0.18	-0.2
3,081,923	-		GFF3015	0.18	+0.0
3,081,973	+		GFF3015	0.23	-1.6
3,081,973	+		GFF3015	0.23	+0.4
3,081,975	+		GFF3015	0.23	-2.7
3,081,981	-		GFF3015	0.23	-1.3
3,081,999	+		GFF3015	0.25	+1.4
3,082,006	+		GFF3015	0.26	-1.9
3,082,011	+		GFF3015	0.26	-2.4
3,082,011	+		GFF3015	0.26	+0.7
3,082,017	-		GFF3015	0.27	+0.0
3,082,038	-		GFF3015	0.29	-1.3
3,082,054	-		GFF3015	0.30	+0.5
3,082,070	-		GFF3015	0.31	-1.2
3,082,093	-		GFF3015	0.33	+1.1
3,082,093	-		GFF3015	0.33	+0.8
3,082,095	+		GFF3015	0.34	-2.2
3,082,100	+		GFF3015	0.34	+0.0
3,082,108	-		GFF3015	0.35	-1.0
3,082,118	-		GFF3015	0.36	-0.1
3,082,118	-		GFF3015	0.36	-0.2
3,082,173	-		GFF3015	0.41	-0.7
3,082,180	+		GFF3015	0.41	-0.4
3,082,180	+		GFF3015	0.41	+0.6
3,082,180	+		GFF3015	0.41	+0.1
3,082,180	+		GFF3015	0.41	+0.3
3,082,188	-		GFF3015	0.42	-1.3
3,082,191	+		GFF3015	0.42	+1.3
3,082,191	+		GFF3015	0.42	+0.0
3,082,200	-		GFF3015	0.43	+1.4
3,082,246	+		GFF3015	0.47	+0.4
3,082,246	+		GFF3015	0.47	-0.7
3,082,246	+		GFF3015	0.47	-0.4
3,082,246	+		GFF3015	0.47	-1.2
3,082,254	-		GFF3015	0.48	-0.3
3,082,254	-		GFF3015	0.48	+0.3
3,082,254	-		GFF3015	0.48	+1.3
3,082,280	+		GFF3015	0.50	+0.7
3,082,280	+		GFF3015	0.50	+0.5
3,082,282	+		GFF3015	0.50	-1.3
3,082,282	+		GFF3015	0.50	-0.4
3,082,288	-		GFF3015	0.51	+0.5
3,082,290	-		GFF3015	0.51	-0.1
3,082,295	+		GFF3015	0.51	-0.3
3,082,303	-		GFF3015	0.52	-1.2
3,082,303	-		GFF3015	0.52	-1.5
3,082,308	-		GFF3015	0.53	-0.8
3,082,318	+		GFF3015	0.53	+0.8
3,082,323	+		GFF3015	0.54	-0.1
3,082,323	+		GFF3015	0.54	+0.5
3,082,323	+		GFF3015	0.54	-2.5
3,082,336	-		GFF3015	0.55	+1.5
3,082,336	-		GFF3015	0.55	+0.5
3,082,336	-		GFF3015	0.55	+0.2
3,082,383	-		GFF3015	0.59	-2.0
3,082,395	+		GFF3015	0.60	-1.6
3,082,403	-		GFF3015	0.61	+1.2
3,082,479	-		GFF3015	0.68	-0.8
3,082,483	+		GFF3015	0.68	-1.1
3,082,483	+		GFF3015	0.68	+0.0
3,082,483	+		GFF3015	0.68	-1.1
3,082,483	+		GFF3015	0.68	-0.6
3,082,483	+		GFF3015	0.68	-0.2
3,082,483	+		GFF3015	0.68	+0.5
3,082,483	+		GFF3015	0.68	+0.4
3,082,483	+		GFF3015	0.68	+0.0
3,082,483	+		GFF3015	0.68	+1.3
3,082,483	+		GFF3015	0.68	-1.3
3,082,483	+		GFF3015	0.68	+0.7
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	+2.0
3,082,483	+		GFF3015	0.68	+0.3
3,082,483	+		GFF3015	0.68	+0.4
3,082,483	+		GFF3015	0.68	-1.2
3,082,483	+		GFF3015	0.68	-0.2
3,082,483	+		GFF3015	0.68	-0.4
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	+1.3
3,082,483	+		GFF3015	0.68	-0.3
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	+0.4
3,082,483	+		GFF3015	0.68	-1.4
3,082,483	+		GFF3015	0.68	-0.9
3,082,483	+		GFF3015	0.68	-0.8
3,082,483	+		GFF3015	0.68	-0.4
3,082,483	+		GFF3015	0.68	-1.6
3,082,491	-		GFF3015	0.69	-0.4
3,082,491	-		GFF3015	0.69	-0.4
3,082,491	-		GFF3015	0.69	-1.5
3,082,491	-		GFF3015	0.69	-0.4
3,082,491	-		GFF3015	0.69	-1.4
3,082,491	-		GFF3015	0.69	-2.0
3,082,491	-		GFF3015	0.69	+0.5
3,082,491	-		GFF3015	0.69	-0.1
3,082,491	-		GFF3015	0.69	+0.0
3,082,491	-		GFF3015	0.69	-1.2
3,082,491	-		GFF3015	0.69	-0.3
3,082,491	-		GFF3015	0.69	-1.9
3,082,491	-		GFF3015	0.69	-0.1
3,082,491	-		GFF3015	0.69	-2.2
3,082,491	-		GFF3015	0.69	-0.6
3,082,491	-		GFF3015	0.69	+0.6
3,082,497	+		GFF3015	0.69	-2.5
3,082,501	-		GFF3015	0.70	-1.7
3,082,501	-		GFF3015	0.70	+0.4
3,082,505	-		GFF3015	0.70	+0.6
3,082,512	+		GFF3015	0.71	+0.2
3,082,527	+		GFF3015	0.72	-1.0
3,082,535	-		GFF3015	0.73	-0.0
3,082,535	-		GFF3015	0.73	-0.4
3,082,536	-		GFF3015	0.73	-1.2
3,082,540	+		GFF3015	0.73	+0.1
3,082,548	-		GFF3015	0.74	-1.7
3,082,550	+		GFF3015	0.74	-1.0
3,082,550	-		GFF3015	0.74	-0.4
3,082,605	-		GFF3015	0.79	-1.5
3,082,607	+		GFF3015	0.79	-0.2
3,082,607	+		GFF3015	0.79	+0.7
3,082,607	+		GFF3015	0.79	-0.3
3,082,607	+		GFF3015	0.79	-1.6
3,082,607	+		GFF3015	0.79	+0.8
3,082,614	+		GFF3015	0.80	+1.4
3,082,614	-		GFF3015	0.80	-1.5
3,082,615	-		GFF3015	0.80	+1.1
3,082,615	-		GFF3015	0.80	-0.5
3,082,615	-		GFF3015	0.80	-0.2
3,082,615	-		GFF3015	0.80	-0.3
3,082,615	-		GFF3015	0.80	-0.4
3,082,615	-		GFF3015	0.80	-1.2
3,082,615	-		GFF3015	0.80	+0.3
3,082,615	-		GFF3015	0.80	-2.1
3,082,615	-		GFF3015	0.80	+0.1
3,082,615	-		GFF3015	0.80	-0.2
3,082,616	-		GFF3015	0.80	-1.0
3,082,622	-		GFF3015	0.80	-1.4
3,082,626	-		GFF3015	0.81	-0.6
3,082,630	-		GFF3015	0.81	-0.9
3,082,658	-		GFF3015	0.84	+0.8
3,082,658	-		GFF3015	0.84	-1.1
3,082,667	-		GFF3015	0.84	+0.1
3,082,676	+		GFF3015	0.85	+0.8
3,082,693	+		GFF3015	0.87	+0.6
3,082,693	-		GFF3015	0.87	-0.1
3,082,705	+		GFF3015	0.88	-0.9
3,082,705	+		GFF3015	0.88	+0.1
3,082,713	-		GFF3015	0.89	+0.5
3,082,720	+		GFF3015	0.89	-0.1
3,082,720	+		GFF3015	0.89	-2.3
3,082,720	+		GFF3015	0.89	-0.8
3,082,720	+		GFF3015	0.89	+0.6
3,082,720	+		GFF3015	0.89	+0.9
3,082,720	+		GFF3015	0.89	+0.1
3,082,720	+		GFF3015	0.89	+0.3
3,082,720	+		GFF3015	0.89	-0.5
3,082,720	+		GFF3015	0.89	-0.8
3,082,720	+		GFF3015	0.89	-0.1
3,082,728	-		GFF3015	0.90	-1.2
3,082,728	-		GFF3015	0.90	+0.9
3,082,728	-		GFF3015	0.90	+0.3
3,082,728	-		GFF3015	0.90	-0.7
3,082,728	-		GFF3015	0.90	-0.8
3,082,728	-		GFF3015	0.90	-1.2
3,082,728	-		GFF3015	0.90	+0.6
3,082,741	-				-3.2
3,082,759	-				-0.9
3,082,759	-				-1.4
3,082,763	+				-0.6
3,082,763	+				+1.4
3,082,771	-				-0.5
3,082,771	-				+0.7
3,082,771	-				-0.2
3,082,775	+				+1.0
3,082,776	-				-1.6
3,082,816	+				+0.3
3,082,816	+				-1.1
3,082,816	+				+0.6
3,082,824	-				+0.7
3,082,824	-				-0.3
3,082,826	+				-0.5
3,082,826	+				+0.5
3,082,826	+				-1.1
3,082,826	+				+2.1
3,082,826	+				-2.3
3,082,826	+				-0.2
3,082,826	+				-1.6
3,082,826	+				-0.1
3,082,826	+				-3.0
3,082,826	+				-1.1
3,082,834	-				+0.0
3,082,834	-				+0.0
3,082,834	-				-2.4
3,082,834	-				-1.4
3,082,839	-				-1.3
3,082,840	+				-0.6
3,082,843	-				-1.3
3,082,844	-				+0.0
3,082,844	-				-1.1
3,082,844	-				-0.4
3,082,856	+				+0.8
3,082,856	+				-2.1
3,082,856	+				-0.3
3,082,856	+				+0.0
3,082,856	+				+0.3
3,082,856	+				-0.7
3,082,856	+				+0.1
3,082,856	+				-2.1
3,082,856	+				+0.2
3,082,856	+				-2.0
3,082,856	+				+0.2
3,082,856	+				+0.0
3,082,856	+				+1.0
3,082,856	+				-1.5
3,082,859	-				-1.4
3,082,861	+				+0.5
3,082,864	-				-2.3
3,082,864	-				-0.1
3,082,864	-				+0.4
3,082,864	-				-0.7
3,082,864	-				+0.1
3,082,864	-				-1.0
3,082,864	-				+0.8
3,082,864	-				-0.1
3,082,869	-				-2.0
3,082,869	-				-0.1
3,082,879	-				+0.7
3,082,890	+				+0.2
3,082,896	-				+0.0
3,082,896	-				-0.4
3,082,923	+				-1.1
3,082,947	+		GFF3016	0.12	-3.1
3,082,947	+		GFF3016	0.12	+0.5
3,082,948	+		GFF3016	0.12	+0.7
3,082,948	+		GFF3016	0.12	-0.2
3,082,956	-		GFF3016	0.13	+1.0
3,082,956	-		GFF3016	0.13	-0.5
3,082,966	-		GFF3016	0.14	+0.4
3,082,997	-		GFF3016	0.17	+0.3
3,083,000	+		GFF3016	0.18	-1.1
3,083,015	+		GFF3016	0.19	-0.7
3,083,015	+		GFF3016	0.19	-0.2
3,083,015	+		GFF3016	0.19	+0.4
3,083,015	+		GFF3016	0.19	+0.7
3,083,015	+		GFF3016	0.19	+1.4
3,083,025	+		GFF3016	0.21	-2.1
3,083,059	-		GFF3016	0.24	+1.5
3,083,072	+		GFF3016	0.26	-0.1
3,083,072	-		GFF3016	0.26	+0.2
3,083,080	-		GFF3016	0.27	+0.1
3,083,091	-		GFF3016	0.28	+0.2
3,083,093	+		GFF3016	0.28	-1.0
3,083,101	-		GFF3016	0.29	+0.5
3,083,101	-		GFF3016	0.29	+0.6
3,083,117	-		GFF3016	0.31	-0.1
3,083,117	-		GFF3016	0.31	-0.1
3,083,133	+		GFF3016	0.33	-1.3
3,083,145	+		GFF3016	0.34	+0.1
3,083,145	+		GFF3016	0.34	-0.5
3,083,153	+		GFF3016	0.35	+0.5
3,083,153	+		GFF3016	0.35	+0.2
3,083,153	-		GFF3016	0.35	-1.1
3,083,161	-		GFF3016	0.36	-0.6
3,083,180	-		GFF3016	0.38	+0.0
3,083,185	+		GFF3016	0.39	-0.3
3,083,185	+		GFF3016	0.39	-1.7
3,083,185	+		GFF3016	0.39	-0.5
3,083,185	+		GFF3016	0.39	+0.9
3,083,190	+		GFF3016	0.39	+1.4
3,083,190	+		GFF3016	0.39	-0.2
3,083,191	+		GFF3016	0.40	+0.1
3,083,191	+		GFF3016	0.40	-1.1
3,083,193	-		GFF3016	0.40	-1.3
3,083,193	-		GFF3016	0.40	-0.6
3,083,193	-		GFF3016	0.40	-0.4
3,083,193	-		GFF3016	0.40	-0.7
3,083,193	-		GFF3016	0.40	-0.2
3,083,199	-		GFF3016	0.40	-0.5
3,083,205	+		GFF3016	0.41	-0.3
3,083,209	-		GFF3016	0.42	+0.4
3,083,241	-		GFF3016	0.45	-0.2
3,083,243	+		GFF3016	0.45	+1.7
3,083,251	-		GFF3016	0.46	+0.7
3,083,270	+		GFF3016	0.49	-2.0
3,083,270	+		GFF3016	0.49	+0.7
3,083,274	+		GFF3016	0.49	+1.4
3,083,274	+		GFF3016	0.49	-0.6
3,083,276	+		GFF3016	0.49	-0.2
3,083,278	-		GFF3016	0.49	+0.8
3,083,278	-		GFF3016	0.49	-2.0
3,083,282	-		GFF3016	0.50	-0.6
3,083,289	-		GFF3016	0.51	-0.1
3,083,342	-		GFF3016	0.57	-0.5
3,083,342	-		GFF3016	0.57	+0.7
3,083,356	+		GFF3016	0.58	+0.3
3,083,357	+		GFF3016	0.59	-0.6
3,083,357	+		GFF3016	0.59	-1.1
3,083,365	-		GFF3016	0.59	+0.4
3,083,370	+		GFF3016	0.60	-0.2
3,083,370	+		GFF3016	0.60	+1.0
3,083,370	+		GFF3016	0.60	+0.1
3,083,370	+		GFF3016	0.60	+0.6
3,083,373	-		GFF3016	0.60	-1.6
3,083,378	-		GFF3016	0.61	-0.3
3,083,378	-		GFF3016	0.61	+0.1
3,083,378	-		GFF3016	0.61	-0.8
3,083,381	-		GFF3016	0.61	+0.2
3,083,396	+		GFF3016	0.63	-0.9
3,083,404	-		GFF3016	0.64	+0.7
3,083,411	+		GFF3016	0.65	+0.9
3,083,411	+		GFF3016	0.65	+0.7
3,083,419	-		GFF3016	0.66	-0.5
3,083,453	+		GFF3016	0.70	-0.5
3,083,453	+		GFF3016	0.70	+1.4
3,083,453	+		GFF3016	0.70	-0.1
3,083,460	-		GFF3016	0.70	+0.3
3,083,472	+		GFF3016	0.72	-0.2
3,083,482	-		GFF3016	0.73	-0.3
3,083,485	+		GFF3016	0.73	-0.7
3,083,498	-		GFF3016	0.75	+0.1
3,083,498	-		GFF3016	0.75	-0.5
3,083,498	-		GFF3016	0.75	-1.1
3,083,499	+		GFF3016	0.75	-2.1
3,083,499	+		GFF3016	0.75	+0.1
3,083,499	+		GFF3016	0.75	+0.8
3,083,503	-		GFF3016	0.75	-0.2
3,083,504	+		GFF3016	0.75	-0.8
3,083,504	+		GFF3016	0.75	+0.5
3,083,504	+		GFF3016	0.75	-0.4
3,083,504	+		GFF3016	0.75	-1.4
3,083,504	+		GFF3016	0.75	-1.5
3,083,504	+		GFF3016	0.75	+0.9
3,083,504	+		GFF3016	0.75	+1.1
3,083,509	+		GFF3016	0.76	-1.4
3,083,512	-		GFF3016	0.76	+1.1
3,083,512	-		GFF3016	0.76	-0.2
3,083,512	-		GFF3016	0.76	-1.1
3,083,512	-		GFF3016	0.76	-0.2
3,083,512	-		GFF3016	0.76	+0.3
3,083,527	-		GFF3016	0.78	-1.4
3,083,531	+		GFF3016	0.78	+0.5
3,083,531	+		GFF3016	0.78	-1.2
3,083,539	-		GFF3016	0.79	-0.5
3,083,541	+		GFF3016	0.80	-0.7
3,083,541	+		GFF3016	0.80	-0.4
3,083,546	+		GFF3016	0.80	-0.4
3,083,549	-		GFF3016	0.81	+1.0
3,083,554	+		GFF3016	0.81	-0.3
3,083,630	+		GFF3016	0.90	+1.6
3,083,633	-				-2.0
3,083,639	+				-1.1
3,083,639	+				+0.0
3,083,639	+				+0.7
3,083,639	+				-1.3
3,083,649	+				-2.4
3,083,658	+				+0.5
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