Strain Fitness in Sphingobium sp. HT1-2 around GFF1959

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,984,338	+		GFF1957	0.49	-0.3
1,984,346	-		GFF1957	0.49	-1.2
1,984,365	+		GFF1957	0.51	-1.6
1,984,370	+		GFF1957	0.51	+0.2
1,984,370	+		GFF1957	0.51	-0.6
1,984,370	+		GFF1957	0.51	+0.5
1,984,373	-		GFF1957	0.51	+0.1
1,984,373	-		GFF1957	0.51	+0.3
1,984,373	-		GFF1957	0.51	+0.5
1,984,373	-		GFF1957	0.51	+0.7
1,984,373	-		GFF1957	0.51	+0.1
1,984,378	-		GFF1957	0.52	+0.3
1,984,395	-		GFF1957	0.53	-0.2
1,984,396	+		GFF1957	0.53	-1.4
1,984,400	+		GFF1957	0.54	+0.3
1,984,413	-		GFF1957	0.55	-0.2
1,984,415	-		GFF1957	0.55	-0.1
1,984,438	+		GFF1957	0.57	+0.4
1,984,438	+		GFF1957	0.57	-0.9
1,984,446	-		GFF1957	0.57	-1.6
1,984,446	-		GFF1957	0.57	+1.3
1,984,459	-		GFF1957	0.58	+0.7
1,984,480	+		GFF1957	0.60	+0.5
1,984,482	-		GFF1957	0.60	-0.6
1,984,485	+		GFF1957	0.61	-0.1
1,984,491	+		GFF1957	0.61	-0.0
1,984,491	+		GFF1957	0.61	+0.3
1,984,491	+		GFF1957	0.61	-0.3
1,984,493	-		GFF1957	0.61	-0.6
1,984,499	-		GFF1957	0.62	+1.2
1,984,499	-		GFF1957	0.62	+1.2
1,984,499	-		GFF1957	0.62	-0.8
1,984,499	-		GFF1957	0.62	+0.2
1,984,499	-		GFF1957	0.62	-0.5
1,984,501	+		GFF1957	0.62	-1.6
1,984,501	+		GFF1957	0.62	-0.2
1,984,503	+		GFF1957	0.62	+0.2
1,984,503	+		GFF1957	0.62	-0.9
1,984,503	+		GFF1957	0.62	+1.4
1,984,511	-		GFF1957	0.63	+1.6
1,984,511	-		GFF1957	0.63	+0.7
1,984,511	-		GFF1957	0.63	-0.5
1,984,511	-		GFF1957	0.63	+0.5
1,984,537	+		GFF1957	0.65	+0.4
1,984,547	+		GFF1957	0.66	+0.7
1,984,571	+		GFF1957	0.68	+1.7
1,984,576	+		GFF1957	0.68	+0.9
1,984,581	+		GFF1957	0.68	+1.0
1,984,607	-		GFF1957	0.71	-0.0
1,984,617	-		GFF1957	0.71	-2.7
1,984,643	+		GFF1957	0.74	-0.7
1,984,651	-		GFF1957	0.74	-0.8
1,984,651	-		GFF1957	0.74	-1.2
1,984,651	-		GFF1957	0.74	-1.9
1,984,651	-		GFF1957	0.74	-0.2
1,984,661	-		GFF1957	0.75	-0.5
1,984,662	+		GFF1957	0.75	+0.2
1,984,696	-		GFF1957	0.78	-0.6
1,984,729	+		GFF1957	0.81	-1.0
1,984,729	+		GFF1957	0.81	+0.1
1,984,734	+		GFF1957	0.81	-1.7
1,984,737	-		GFF1957	0.81	+0.1
1,984,739	-		GFF1957	0.81	-0.6
1,984,742	-		GFF1957	0.82	+1.8
1,984,742	-		GFF1957	0.82	-2.4
1,984,742	-		GFF1957	0.82	-0.2
1,984,744	+		GFF1957	0.82	-0.4
1,984,747	-		GFF1957	0.82	+0.2
1,984,747	-		GFF1957	0.82	-1.4
1,984,747	-		GFF1957	0.82	+1.4
1,984,758	-		GFF1957	0.83	-0.7
1,984,760	+		GFF1957	0.83	+0.2
1,984,760	+		GFF1957	0.83	-0.1
1,984,760	+		GFF1957	0.83	-1.3
1,984,760	+		GFF1957	0.83	-0.3
1,984,760	+		GFF1957	0.83	-0.6
1,984,763	-		GFF1957	0.83	-0.1
1,984,765	+		GFF1957	0.83	-1.9
1,984,768	-		GFF1957	0.84	+0.5
1,984,768	-		GFF1957	0.84	-1.8
1,984,768	-		GFF1957	0.84	-0.0
1,984,768	-		GFF1957	0.84	-0.2
1,984,768	-		GFF1957	0.84	+0.3
1,984,768	-		GFF1957	0.84	+0.4
1,984,768	-		GFF1957	0.84	-0.3
1,984,773	-		GFF1957	0.84	+0.1
1,984,773	-		GFF1957	0.84	-1.1
1,984,773	-		GFF1957	0.84	-0.2
1,984,773	-		GFF1957	0.84	-0.5
1,984,773	-		GFF1957	0.84	-0.2
1,984,773	-		GFF1957	0.84	-0.1
1,984,804	+		GFF1957	0.87	-0.2
1,984,824	+		GFF1957	0.88	+1.4
1,984,832	-		GFF1957	0.89	+0.7
1,984,832	-		GFF1957	0.89	-0.6
1,984,832	-		GFF1957	0.89	+0.0
1,984,834	-		GFF1957	0.89	-0.2
1,984,837	-		GFF1957	0.89	+0.2
1,984,852	-				-0.3
1,984,853	+				-2.1
1,984,853	+				+0.7
1,984,853	+				-0.9
1,984,861	-				-0.3
1,984,911	-				-0.6
1,984,919	+				-0.3
1,984,919	+				-0.8
1,984,925	-				+0.7
1,984,929	-				-0.3
1,984,969	+				-0.2
1,985,223	-		GFF1958	0.79	-0.7
1,985,223	-		GFF1958	0.79	+0.4
1,985,234	+		GFF1958	0.82	+0.9
1,985,286	+				+1.2
1,985,286	+				+1.0
1,985,286	+				-1.9
1,985,294	-				-0.5
1,985,311	-				-0.1
1,985,312	+				-0.3
1,985,312	+				+1.8
1,985,354	-				+0.9
1,985,354	-				+0.6
1,985,360	+				-0.2
1,985,367	-				+0.6
1,985,416	+				+0.9
1,986,191	+		GFF1959	0.86	-0.3
1,986,329	-				-0.4
1,986,365	+				-1.2
1,986,373	-				-0.1
1,986,375	-				-1.5
1,986,392	+				+1.5
1,986,403	+				+0.1
1,986,424	+				+1.5
1,986,424	-				-1.9
1,986,439	-				+0.1
1,986,439	-				-0.1
1,986,449	-				-0.1
1,986,481	+				-2.3
1,986,481	+				+1.1
1,986,481	+				+0.0
1,986,481	+				-1.5
1,986,481	+				-0.7
1,986,481	+				-2.3
1,986,481	+				+0.4
1,986,481	+				-3.1
1,986,481	+				-1.9
1,986,481	+				-0.8
1,986,481	+				+1.6
1,986,481	+				-0.2
1,986,481	+				-0.7
1,986,481	+				-0.3
1,986,481	+				-0.9
1,986,481	+				+0.2
1,986,481	+				+0.5
1,986,481	+				+0.2
1,986,481	+				-0.6
1,986,481	+				-1.8
1,986,481	+				-2.5
1,986,481	+				+0.2
1,986,481	+				-0.2
1,986,481	+				+0.2
1,986,481	+				-3.1
1,986,481	+				+0.6
1,986,481	+				+0.2
1,986,481	+				-0.8
1,986,481	+				-0.8
1,986,481	+				-0.3
1,986,481	+				-1.3
1,986,481	+				+0.6
1,986,481	+				+0.3
1,986,481	+				-0.7
1,986,481	+				+1.0
1,986,481	+				-0.9
1,986,481	+				+0.3
1,986,489	-				-1.4
1,986,489	-				+0.6
1,986,489	-				+0.4
1,986,489	-				-0.5
1,986,489	-				-0.3
1,986,489	-				+0.2
1,986,489	-				+0.4
1,986,489	-				-0.9
1,986,489	-				-1.2
1,986,489	-				-0.0
1,986,489	-				-1.9
1,986,489	-				+0.5
1,986,489	-				+0.7
1,986,489	-				+0.2
1,986,489	-				-0.3
1,986,489	-				+0.6
1,986,489	-				+0.5
1,986,489	-				-0.8
1,986,489	-				-0.5
1,986,489	-				-0.4
1,986,489	-				+1.7
1,986,489	-				+0.7
1,986,489	-				-1.8
1,986,489	-				-1.3
1,986,489	-				+0.3
1,986,489	-				-1.0
1,986,506	-				-0.8
1,986,506	-				-0.2
1,986,508	+				+2.0
1,986,522	+				-1.3
1,986,574	+				-0.2
1,986,574	+				+0.3
1,986,578	-				+0.0
1,986,585	+		GFF1960	0.10	-1.0
1,986,593	+		GFF1960	0.11	+0.5
1,986,601	-		GFF1960	0.12	+0.6
1,986,601	-		GFF1960	0.12	-0.3
1,986,621	-		GFF1960	0.14	-0.5
1,986,626	+		GFF1960	0.14	+0.5
1,986,626	-		GFF1960	0.14	-0.3
1,986,631	-		GFF1960	0.15	-2.3
1,986,640	+		GFF1960	0.16	-0.8
1,986,657	+		GFF1960	0.17	+0.0
1,986,665	-		GFF1960	0.18	+0.1
1,986,665	-		GFF1960	0.18	+0.0
1,986,666	-		GFF1960	0.18	+0.4
1,986,671	+		GFF1960	0.19	+0.7
1,986,671	+		GFF1960	0.19	-0.4
1,986,701	+		GFF1960	0.22	+0.4
1,986,706	+		GFF1960	0.22	-1.6
1,986,706	+		GFF1960	0.22	-0.4
1,986,709	-		GFF1960	0.22	-1.3
1,986,766	+		GFF1960	0.28	-0.8
1,986,767	-		GFF1960	0.28	+0.6
1,986,768	+		GFF1960	0.28	-0.1
1,986,776	-		GFF1960	0.29	-0.8
1,986,784	+		GFF1960	0.30	+0.1
1,986,784	+		GFF1960	0.30	+1.5
1,986,784	+		GFF1960	0.30	-0.2
1,986,784	+		GFF1960	0.30	+1.2
1,986,792	-		GFF1960	0.31	+0.1
1,986,792	-		GFF1960	0.31	-1.7
1,986,792	-		GFF1960	0.31	-0.6
1,986,816	+		GFF1960	0.33	+0.1
1,986,816	+		GFF1960	0.33	+1.3
1,986,816	+		GFF1960	0.33	-1.1
1,986,816	+		GFF1960	0.33	-0.1
1,986,816	+		GFF1960	0.33	+0.1
1,986,820	+		GFF1960	0.33	-1.7
1,986,828	-		GFF1960	0.34	-0.1
1,986,828	-		GFF1960	0.34	+0.3
1,986,834	+		GFF1960	0.35	-0.1
1,986,842	-		GFF1960	0.35	-0.3
1,986,850	-		GFF1960	0.36	+0.1
1,986,850	-		GFF1960	0.36	-0.8
1,986,864	-		GFF1960	0.38	+1.2
1,986,878	-		GFF1960	0.39	-1.1
1,986,888	+		GFF1960	0.40	-1.6
1,986,896	-		GFF1960	0.41	+1.3
1,986,897	-		GFF1960	0.41	-0.4
1,986,899	+		GFF1960	0.41	-0.6
1,986,899	+		GFF1960	0.41	-0.3
1,986,907	-		GFF1960	0.42	-1.9
1,986,909	+		GFF1960	0.42	+0.6
1,986,917	-		GFF1960	0.43	+0.2
1,986,919	+		GFF1960	0.43	-0.2
1,986,920	-		GFF1960	0.43	-1.4
1,986,922	-		GFF1960	0.43	-0.0
1,986,923	+		GFF1960	0.43	+0.7
1,986,923	+		GFF1960	0.43	-0.3
1,986,923	+		GFF1960	0.43	+0.7
1,986,923	+		GFF1960	0.43	-0.6
1,986,923	+		GFF1960	0.43	+1.3
1,986,923	+		GFF1960	0.43	-0.8
1,986,923	+		GFF1960	0.43	-0.2
1,986,923	+		GFF1960	0.43	+0.1
1,986,925	+		GFF1960	0.44	-0.0
1,986,931	-		GFF1960	0.44	-1.6
1,986,931	-		GFF1960	0.44	+1.3
1,986,931	-		GFF1960	0.44	-0.9
1,986,931	-		GFF1960	0.44	-0.8
1,986,931	-		GFF1960	0.44	+1.0
1,986,931	-		GFF1960	0.44	+0.1
1,986,931	-		GFF1960	0.44	-1.0
1,986,931	-		GFF1960	0.44	+0.1
1,986,931	-		GFF1960	0.44	-0.2
1,986,931	-		GFF1960	0.44	-0.1
1,986,954	-		GFF1960	0.46	+1.7
1,986,984	+		GFF1960	0.49	+0.9
1,986,988	+		GFF1960	0.50	+0.1
1,987,000	-		GFF1960	0.51	-0.3
1,987,006	-		GFF1960	0.52	-1.2
1,987,016	+		GFF1960	0.52	+0.0
1,987,024	-		GFF1960	0.53	-0.8
1,987,039	-		GFF1960	0.55	-1.3
1,987,048	+		GFF1960	0.56	-2.3
1,987,048	+		GFF1960	0.56	-0.7
1,987,056	-		GFF1960	0.56	+0.5
1,987,056	-		GFF1960	0.56	-0.8
1,987,056	-		GFF1960	0.56	+0.4
1,987,061	+		GFF1960	0.57	-0.3
1,987,069	-		GFF1960	0.58	-1.7
1,987,078	+		GFF1960	0.59	-2.6
1,987,080	+		GFF1960	0.59	-0.0
1,987,080	+		GFF1960	0.59	-0.3
1,987,108	+		GFF1960	0.61	-2.3
1,987,109	+		GFF1960	0.62	+0.2
1,987,109	+		GFF1960	0.62	-0.5
1,987,109	+		GFF1960	0.62	+0.0
1,987,110	-		GFF1960	0.62	+0.8
1,987,117	-		GFF1960	0.62	-1.5
1,987,118	-		GFF1960	0.62	-0.7
1,987,120	+		GFF1960	0.63	-0.1
1,987,120	+		GFF1960	0.63	-1.1
1,987,140	+		GFF1960	0.65	-0.6
1,987,142	-		GFF1960	0.65	-0.7
1,987,183	+		GFF1960	0.69	-1.0
1,987,208	-		GFF1960	0.71	-0.8
1,987,223	+		GFF1960	0.73	+1.1
1,987,234	-		GFF1960	0.74	+0.6
1,987,241	+		GFF1960	0.74	+0.2
1,987,258	+		GFF1960	0.76	-0.7
1,987,295	+		GFF1960	0.80	+0.3
1,987,295	-		GFF1960	0.80	+0.5
1,987,300	+		GFF1960	0.80	+1.0
1,987,305	+		GFF1960	0.81	+0.3
1,987,313	-		GFF1960	0.82	-0.6