Strain Fitness in Sphingobium sp. HT1-2 around GFF1758

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,785,716	+				-0.4
1,785,727	+				-0.3
1,785,734	+				+0.9
1,785,740	-				-0.6
1,785,740	-				-0.2
1,785,768	-				-0.1
1,785,779	+				-0.4
1,785,783	+				-1.4
1,785,804	+				-1.3
1,785,839	+				+0.3
1,785,909	+				-2.2
1,785,994	-				+0.7
1,786,007	+				+0.2
1,786,022	+				+0.8
1,786,030	-				+0.8
1,786,032	+				+1.3
1,786,033	+				+0.8
1,786,047	+				-0.3
1,786,058	-				-0.4
1,786,097	+		GFF1757	0.12	-0.8
1,786,110	+		GFF1757	0.14	+0.2
1,786,118	-		GFF1757	0.16	+0.3
1,786,153	+		GFF1757	0.21	-2.1
1,786,153	+		GFF1757	0.21	-0.5
1,786,161	-		GFF1757	0.22	+1.0
1,786,161	-		GFF1757	0.22	-1.8
1,786,172	-		GFF1757	0.24	+0.7
1,786,193	+		GFF1757	0.27	-1.4
1,786,193	+		GFF1757	0.27	+0.5
1,786,193	+		GFF1757	0.27	+0.4
1,786,201	-		GFF1757	0.28	+0.6
1,786,201	-		GFF1757	0.28	-1.7
1,786,201	-		GFF1757	0.28	-1.5
1,786,257	-		GFF1757	0.37	-0.6
1,786,268	-		GFF1757	0.39	+1.0
1,786,269	-		GFF1757	0.39	-1.4
1,786,277	-		GFF1757	0.40	-0.6
1,786,277	-		GFF1757	0.40	-1.1
1,786,304	+		GFF1757	0.44	-1.3
1,786,312	-		GFF1757	0.45	+0.1
1,786,342	-		GFF1757	0.50	-1.8
1,786,347	-		GFF1757	0.51	-0.8
1,786,364	+		GFF1757	0.53	+0.7
1,786,364	+		GFF1757	0.53	-0.2
1,786,364	+		GFF1757	0.53	-0.4
1,786,364	+		GFF1757	0.53	+0.7
1,786,365	+		GFF1757	0.53	-0.0
1,786,365	+		GFF1757	0.53	-0.4
1,786,366	-		GFF1757	0.53	+1.3
1,786,372	-		GFF1757	0.54	-0.7
1,786,372	-		GFF1757	0.54	-0.2
1,786,372	-		GFF1757	0.54	+0.9
1,786,372	-		GFF1757	0.54	-2.3
1,786,372	-		GFF1757	0.54	+0.8
1,786,372	-		GFF1757	0.54	+0.4
1,786,378	-		GFF1757	0.55	+0.1
1,786,404	+		GFF1757	0.59	+0.9
1,786,410	+		GFF1757	0.60	-1.1
1,786,410	+		GFF1757	0.60	-1.3
1,786,433	-		GFF1757	0.64	-1.2
1,786,434	+		GFF1757	0.64	+0.1
1,786,434	+		GFF1757	0.64	+0.2
1,786,442	-		GFF1757	0.65	-2.2
1,786,449	+		GFF1757	0.66	-1.3
1,786,466	+		GFF1757	0.69	+0.4
1,786,466	+		GFF1757	0.69	+0.4
1,786,476	-		GFF1757	0.70	+0.8
1,786,493	-		GFF1757	0.73	-0.2
1,786,536	+		GFF1757	0.79	-0.5
1,786,536	+		GFF1757	0.79	+0.1
1,786,538	+		GFF1757	0.80	-0.4
1,786,540	-		GFF1757	0.80	-1.1
1,786,541	+		GFF1757	0.80	+1.1
1,786,544	-		GFF1757	0.81	-0.6
1,786,544	-		GFF1757	0.81	-3.2
1,786,544	-		GFF1757	0.81	+0.6
1,786,549	-		GFF1757	0.81	-1.7
1,786,552	+		GFF1757	0.82	-0.6
1,786,552	+		GFF1757	0.82	+0.7
1,786,552	+		GFF1757	0.82	+0.7
1,786,560	-		GFF1757	0.83	-0.2
1,786,562	+		GFF1757	0.83	+0.8
1,786,562	+		GFF1757	0.83	+0.5
1,786,570	-		GFF1757	0.84	-2.2
1,786,578	-		GFF1757	0.86	-0.8
1,786,607	-				-1.5
1,786,614	+				-0.3
1,786,622	-				-0.1
1,786,651	+				+2.1
1,786,683	+				-0.3
1,786,683	+				-0.1
1,786,683	+				-1.5
1,786,691	-				+0.7
1,786,691	-				+0.1
1,786,691	-				-0.2
1,786,693	+				-0.2
1,786,693	+				-0.3
1,786,693	+				-0.9
1,786,693	+				-0.1
1,786,693	+				+0.6
1,786,693	+				-0.6
1,786,693	+				-1.3
1,786,700	+				-0.9
1,786,700	+				+0.7
1,786,700	+				+0.0
1,786,700	+				+1.0
1,786,700	+				-0.6
1,786,700	+				+0.6
1,786,700	+				-0.9
1,786,700	+				-0.5
1,786,700	+				-0.2
1,786,701	-				+0.2
1,786,701	-				-1.6
1,786,701	-				+0.8
1,786,701	-				-1.7
1,786,708	-				-0.8
1,786,708	-				-0.3
1,786,708	-				+0.7
1,786,733	+				+0.9
1,786,733	+				-0.0
1,786,733	-				-0.9
1,786,741	-				-0.3
1,786,747	-				-0.6
1,786,749	+				+1.2
1,786,754	+				-0.7
1,786,754	+				-2.3
1,786,762	-				-0.1
1,786,775	+				-1.5
1,786,783	-				+0.2
1,786,789	+				+0.4
1,786,789	+				+0.8
1,786,789	+				-0.9
1,786,809	+				+0.4
1,786,817	-				+0.8
1,786,817	-				+0.6
1,786,817	-				-0.7
1,786,817	-				-0.3
1,786,823	+				-0.5
1,786,823	+				-1.4
1,786,831	-				-0.6
1,786,836	+				+0.4
1,786,836	+				-0.3
1,786,836	+				-0.7
1,786,844	-				-0.9
1,786,844	-				-2.1
1,786,844	-				-0.4
1,786,846	+				-0.0
1,786,852	-				+0.2
1,786,854	-				+0.4
1,786,874	-				-0.6
1,786,880	-				-0.8
1,786,906	-		GFF1758	0.11	+0.8
1,786,923	+		GFF1758	0.12	-2.4
1,786,923	+		GFF1758	0.12	+0.2
1,786,931	-		GFF1758	0.13	-0.7
1,786,931	-		GFF1758	0.13	-0.0
1,786,933	+		GFF1758	0.13	+0.9
1,786,935	-		GFF1758	0.13	+0.4
1,786,938	+		GFF1758	0.13	-0.3
1,786,955	+		GFF1758	0.14	-0.0
1,786,955	+		GFF1758	0.14	+0.8
1,786,955	+		GFF1758	0.14	-1.4
1,786,955	+		GFF1758	0.14	+0.1
1,786,962	-		GFF1758	0.15	-0.2
1,786,963	-		GFF1758	0.15	-1.2
1,786,963	-		GFF1758	0.15	-0.4
1,786,963	-		GFF1758	0.15	+0.7
1,786,963	-		GFF1758	0.15	-1.3
1,786,968	-		GFF1758	0.15	+1.1
1,786,978	-		GFF1758	0.16	-1.2
1,786,978	-		GFF1758	0.16	+0.8
1,786,983	+		GFF1758	0.16	+0.7
1,786,983	+		GFF1758	0.16	+0.4
1,786,983	+		GFF1758	0.16	-0.1
1,786,983	+		GFF1758	0.16	+0.4
1,786,991	-		GFF1758	0.17	+0.4
1,786,991	-		GFF1758	0.17	-1.2
1,786,991	-		GFF1758	0.17	+1.8
1,786,991	-		GFF1758	0.17	-0.5
1,786,993	+		GFF1758	0.17	-0.7
1,787,009	-		GFF1758	0.18	+0.7
1,787,032	+		GFF1758	0.19	+1.5
1,787,032	+		GFF1758	0.19	+0.8
1,787,032	+		GFF1758	0.19	-1.6
1,787,033	+		GFF1758	0.19	-0.0
1,787,033	+		GFF1758	0.19	-0.5
1,787,033	+		GFF1758	0.19	+0.4
1,787,040	-		GFF1758	0.19	-0.4
1,787,040	-		GFF1758	0.19	-2.0
1,787,040	-		GFF1758	0.19	-1.3
1,787,040	-		GFF1758	0.19	-0.1
1,787,040	-		GFF1758	0.19	-1.7
1,787,041	-		GFF1758	0.20	-0.6
1,787,041	-		GFF1758	0.20	+0.0
1,787,041	-		GFF1758	0.20	-0.2
1,787,053	+		GFF1758	0.20	+2.1
1,787,053	+		GFF1758	0.20	-0.6
1,787,053	+		GFF1758	0.20	-1.7
1,787,054	+		GFF1758	0.20	-0.9
1,787,061	-		GFF1758	0.21	+0.4
1,787,061	-		GFF1758	0.21	-0.4
1,787,080	+		GFF1758	0.22	-0.4
1,787,110	+		GFF1758	0.24	-2.0
1,787,121	+		GFF1758	0.24	-0.2
1,787,129	-		GFF1758	0.25	-1.0
1,787,129	-		GFF1758	0.25	+0.4
1,787,164	-		GFF1758	0.27	-0.4
1,787,166	+		GFF1758	0.27	-0.4
1,787,174	-		GFF1758	0.28	+0.2
1,787,230	-		GFF1758	0.31	-0.2
1,787,231	+		GFF1758	0.31	-1.6
1,787,232	+		GFF1758	0.31	-2.3
1,787,232	+		GFF1758	0.31	-0.2
1,787,237	+		GFF1758	0.31	+0.8
1,787,239	-		GFF1758	0.31	+0.6
1,787,259	-		GFF1758	0.33	+0.4
1,787,271	-		GFF1758	0.33	-0.1
1,787,282	-		GFF1758	0.34	+0.2
1,787,288	+		GFF1758	0.34	-1.6
1,787,289	+		GFF1758	0.34	-0.1
1,787,296	-		GFF1758	0.35	+0.2
1,787,368	-		GFF1758	0.39	-1.1
1,787,423	-		GFF1758	0.42	-0.0
1,787,436	+		GFF1758	0.43	-0.4
1,787,444	+		GFF1758	0.44	-0.2
1,787,444	+		GFF1758	0.44	-0.8
1,787,444	+		GFF1758	0.44	-0.5
1,787,444	+		GFF1758	0.44	-0.6
1,787,444	+		GFF1758	0.44	-2.9
1,787,449	+		GFF1758	0.44	-0.4
1,787,449	+		GFF1758	0.44	-0.8
1,787,449	+		GFF1758	0.44	-1.2
1,787,449	+		GFF1758	0.44	+0.9
1,787,451	+		GFF1758	0.44	-0.3
1,787,452	-		GFF1758	0.44	+0.5
1,787,452	-		GFF1758	0.44	+1.0
1,787,452	-		GFF1758	0.44	-1.8
1,787,457	-		GFF1758	0.44	-0.0
1,787,457	-		GFF1758	0.44	-1.6
1,787,457	-		GFF1758	0.44	-2.7
1,787,464	-		GFF1758	0.45	+0.5
1,787,476	+		GFF1758	0.46	-1.9
1,787,495	+		GFF1758	0.47	-0.9
1,787,500	+		GFF1758	0.47	-0.2
1,787,504	-		GFF1758	0.47	-2.9
1,787,515	+		GFF1758	0.48	+1.2
1,787,523	-		GFF1758	0.48	-1.4
1,787,523	-		GFF1758	0.48	-1.8
1,787,523	-		GFF1758	0.48	+0.2
1,787,527	-		GFF1758	0.49	-0.2
1,787,553	+		GFF1758	0.50	-1.3
1,787,565	-		GFF1758	0.51	-1.0
1,787,592	+		GFF1758	0.53	-0.1
1,787,592	+		GFF1758	0.53	-1.1
1,787,592	+		GFF1758	0.53	-0.8
1,787,592	+		GFF1758	0.53	-0.3
1,787,600	+		GFF1758	0.53	-0.1
1,787,600	+		GFF1758	0.53	-0.6
1,787,600	+		GFF1758	0.53	-0.4
1,787,600	+		GFF1758	0.53	+0.2
1,787,600	+		GFF1758	0.53	-0.0
1,787,600	-		GFF1758	0.53	+0.1
1,787,600	-		GFF1758	0.53	+0.7
1,787,602	+		GFF1758	0.53	-0.4
1,787,608	-		GFF1758	0.54	-0.8
1,787,608	-		GFF1758	0.54	+0.5
1,787,608	-		GFF1758	0.54	-1.7
1,787,610	+		GFF1758	0.54	-0.0
1,787,610	+		GFF1758	0.54	+0.2
1,787,618	-		GFF1758	0.54	-0.7
1,787,618	-		GFF1758	0.54	-0.6
1,787,626	-		GFF1758	0.55	+0.0
1,787,660	+		GFF1758	0.57	+0.5
1,787,660	+		GFF1758	0.57	+0.9
1,787,665	+		GFF1758	0.57	+1.7
1,787,665	+		GFF1758	0.57	+1.5
1,787,668	-		GFF1758	0.57	+0.1
1,787,668	-		GFF1758	0.57	-0.3
1,787,670	-		GFF1758	0.57	+0.4
1,787,693	-		GFF1758	0.59	-1.8
1,787,721	-		GFF1758	0.60	-2.2
1,787,721	-		GFF1758	0.60	-0.7
1,787,747	+		GFF1758	0.62	-0.6
1,787,752	+		GFF1758	0.62	-0.9
1,787,757	+		GFF1758	0.62	+0.0
1,787,767	+		GFF1758	0.63	-0.3
1,787,775	-		GFF1758	0.64	-0.4
1,787,785	+		GFF1758	0.64	+0.5
1,787,793	-		GFF1758	0.65	+0.3
1,787,835	-		GFF1758	0.67	+0.4
1,787,886	-		GFF1758	0.70	+0.8
1,787,896	+		GFF1758	0.71	-0.9
1,787,912	+		GFF1758	0.72	-1.1
1,787,920	-		GFF1758	0.72	-1.0
1,787,929	+		GFF1758	0.73	-1.0
1,787,929	+		GFF1758	0.73	-0.3
1,787,929	+		GFF1758	0.73	-1.4
1,787,929	+		GFF1758	0.73	+0.2
1,787,929	+		GFF1758	0.73	+0.0
1,787,937	+		GFF1758	0.73	+0.6
1,787,937	-		GFF1758	0.73	-0.2
1,787,937	-		GFF1758	0.73	-0.1
1,787,937	-		GFF1758	0.73	-0.2
1,787,937	-		GFF1758	0.73	-0.2
1,787,937	-		GFF1758	0.73	-0.8
1,787,937	-		GFF1758	0.73	+1.0
1,787,947	+		GFF1758	0.74	+0.3
1,787,947	+		GFF1758	0.74	-0.6
1,787,947	+		GFF1758	0.74	-0.4
1,787,955	-		GFF1758	0.74	+0.0
1,787,956	-		GFF1758	0.74	+0.7
1,787,963	-		GFF1758	0.75	+0.4
1,787,976	+		GFF1758	0.76	-0.6
1,788,062	+		GFF1758	0.81	-0.6
1,788,062	+		GFF1758	0.81	-2.0
1,788,064	+		GFF1758	0.81	-1.2
1,788,070	-		GFF1758	0.81	-0.8
1,788,070	-		GFF1758	0.81	-0.0
1,788,070	-		GFF1758	0.81	+0.0
1,788,123	-		GFF1758	0.84	-0.5
1,788,138	+		GFF1758	0.85	+1.8
1,788,146	-		GFF1758	0.86	-0.5
1,788,148	+		GFF1758	0.86	+0.3
1,788,170	+		GFF1758	0.87	-0.4
1,788,175	+		GFF1758	0.88	+1.9
1,788,175	+		GFF1758	0.88	+0.3
1,788,175	+		GFF1758	0.88	+0.6
1,788,175	+		GFF1758	0.88	+0.2
1,788,175	+		GFF1758	0.88	+0.2
1,788,175	+		GFF1758	0.88	+1.9
1,788,175	+		GFF1758	0.88	-0.8
1,788,183	-		GFF1758	0.88	+0.6
1,788,183	-		GFF1758	0.88	+0.1
1,788,183	-		GFF1758	0.88	-0.5
1,788,183	-		GFF1758	0.88	+0.0
1,788,183	-		GFF1758	0.88	+0.8
1,788,183	-		GFF1758	0.88	-1.7
1,788,184	-		GFF1758	0.88	-1.3
1,788,196	-		GFF1758	0.89	-0.1
1,788,209	+		GFF1758	0.90	+0.3
1,788,214	+		GFF1758	0.90	-0.2
1,788,217	-				-2.8
1,788,217	-				-0.4
1,788,217	-				-2.2
1,788,222	-				-1.3
1,788,245	-				-0.9
1,788,247	+				-0.0
1,788,260	-				-0.6
1,788,264	+				-0.3
1,788,264	+				+0.6
1,788,264	+				+0.4
1,788,264	+				+1.2
1,788,269	+				+1.2
1,788,272	-				-0.3
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1,788,272	-				-1.4
1,788,272	-				-0.4
1,788,272	-				-0.6
1,788,277	-				-2.1
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1,788,348	-				+1.2
1,788,361	+				-0.0
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1,788,469	+				-0.6
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1,788,587	+				+0.2
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1,789,315	-		GFF1759	0.60	+0.5
1,789,339	-		GFF1759	0.62	-2.6
1,789,345	-		GFF1759	0.62	-1.0