Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06935 and MPMX19_06936 are separated by 45 nucleotides MPMX19_06936 and MPMX19_06937 are separated by 133 nucleotides MPMX19_06937 and MPMX19_06938 are separated by 132 nucleotides MPMX19_06938 and MPMX19_06939 overlap by 8 nucleotides
MPMX19_06935: MPMX19_06935 - putative periplasmic iron-binding protein, at 207,716 to 208,639
_06935
MPMX19_06936: MPMX19_06936 - hypothetical protein, at 208,685 to 209,401
_06936
MPMX19_06937: MPMX19_06937 - hypothetical protein, at 209,535 to 210,818
_06937
MPMX19_06938: MPMX19_06938 - Short-chain-enoyl-CoA hydratase, at 210,951 to 211,766
_06938
MPMX19_06939: MPMX19_06939 - S-(hydroxymethyl)glutathione dehydrogenase, at 211,759 to 212,889
_06939
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.536 kb on - strand, within MPMX19_06935 at 208.536 kb on - strand, within MPMX19_06935 at 208.536 kb on - strand, within MPMX19_06935 at 208.577 kb on + strand at 208.577 kb on + strand at 208.577 kb on + strand at 208.577 kb on + strand at 208.578 kb on - strand at 208.578 kb on - strand at 208.578 kb on - strand at 208.578 kb on - strand at 208.686 kb on + strand at 208.687 kb on - strand at 208.687 kb on - strand at 208.687 kb on - strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.746 kb on + strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.747 kb on - strand at 208.863 kb on + strand, within MPMX19_06936 at 208.863 kb on + strand, within MPMX19_06936 at 208.863 kb on + strand, within MPMX19_06936 at 208.863 kb on + strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 208.864 kb on - strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.121 kb on + strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.122 kb on - strand, within MPMX19_06936 at 209.322 kb on + strand, within MPMX19_06936 at 209.322 kb on + strand, within MPMX19_06936 at 209.322 kb on + strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.323 kb on - strand, within MPMX19_06936 at 209.467 kb on + strand at 209.467 kb on + strand at 209.468 kb on - strand at 209.468 kb on - strand at 209.479 kb on - strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.635 kb on + strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.636 kb on - strand at 209.638 kb on + strand at 209.638 kb on + strand at 209.639 kb on - strand at 209.639 kb on - strand at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.686 kb on + strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.687 kb on - strand, within MPMX19_06937 at 209.821 kb on + strand, within MPMX19_06937 at 209.821 kb on + strand, within MPMX19_06937 at 209.821 kb on + strand, within MPMX19_06937 at 209.821 kb on + strand, within MPMX19_06937 at 209.822 kb on - strand, within MPMX19_06937 at 209.929 kb on + strand, within MPMX19_06937 at 209.930 kb on - strand, within MPMX19_06937 at 209.930 kb on - strand, within MPMX19_06937 at 209.930 kb on - strand, within MPMX19_06937 at 209.930 kb on - strand, within MPMX19_06937 at 210.133 kb on + strand, within MPMX19_06937 at 210.133 kb on + strand, within MPMX19_06937 at 210.133 kb on + strand, within MPMX19_06937 at 210.134 kb on - strand, within MPMX19_06937 at 210.134 kb on - strand, within MPMX19_06937 at 210.134 kb on - strand, within MPMX19_06937 at 210.245 kb on - strand, within MPMX19_06937 at 210.262 kb on + strand, within MPMX19_06937 at 210.262 kb on + strand, within MPMX19_06937 at 210.262 kb on + strand, within MPMX19_06937 at 210.262 kb on + strand, within MPMX19_06937 at 210.262 kb on + strand, within MPMX19_06937 at 210.262 kb on + strand, within MPMX19_06937 at 210.263 kb on - strand, within MPMX19_06937 at 210.263 kb on - strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.319 kb on + strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.320 kb on - strand, within MPMX19_06937 at 210.328 kb on + strand, within MPMX19_06937 at 210.328 kb on + strand, within MPMX19_06937 at 210.328 kb on + strand, within MPMX19_06937 at 210.328 kb on + strand, within MPMX19_06937 at 210.329 kb on - strand, within MPMX19_06937 at 210.493 kb on + strand, within MPMX19_06937 at 210.493 kb on + strand, within MPMX19_06937 at 210.493 kb on + strand, within MPMX19_06937 at 210.494 kb on - strand, within MPMX19_06937 at 210.939 kb on + strand at 210.939 kb on + strand at 210.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 208,536 - MPMX19_06935 0.89 -0.6 208,536 - MPMX19_06935 0.89 -0.3 208,536 - MPMX19_06935 0.89 +0.7 208,577 + +0.1 208,577 + -1.7 208,577 + -0.5 208,577 + -1.4 208,578 - -0.2 208,578 - -1.0 208,578 - -0.2 208,578 - -1.3 208,686 + +0.0 208,687 - -0.5 208,687 - +0.3 208,687 - -1.9 208,746 + +0.6 208,746 + +0.2 208,746 + +0.3 208,746 + +0.1 208,746 + -1.6 208,746 + -1.4 208,746 + +0.5 208,746 + -0.0 208,746 + -2.0 208,746 + -1.3 208,746 + -0.9 208,746 + +1.1 208,746 + +0.6 208,747 - -0.6 208,747 - +0.4 208,747 - +0.6 208,747 - +0.4 208,747 - -0.9 208,747 - +0.1 208,747 - +1.2 208,747 - +0.5 208,747 - -0.3 208,747 - +0.8 208,747 - -0.4 208,747 - -0.5 208,747 - -0.1 208,747 - -0.4 208,863 + MPMX19_06936 0.25 -1.2 208,863 + MPMX19_06936 0.25 -1.6 208,863 + MPMX19_06936 0.25 -0.4 208,863 + MPMX19_06936 0.25 -0.5 208,864 - MPMX19_06936 0.25 -1.3 208,864 - MPMX19_06936 0.25 +0.3 208,864 - MPMX19_06936 0.25 -0.6 208,864 - MPMX19_06936 0.25 -1.0 208,864 - MPMX19_06936 0.25 -2.1 208,864 - MPMX19_06936 0.25 -0.6 209,121 + MPMX19_06936 0.61 -0.7 209,121 + MPMX19_06936 0.61 -0.2 209,121 + MPMX19_06936 0.61 -1.2 209,121 + MPMX19_06936 0.61 -1.5 209,121 + MPMX19_06936 0.61 +0.3 209,121 + MPMX19_06936 0.61 -0.8 209,122 - MPMX19_06936 0.61 -0.8 209,122 - MPMX19_06936 0.61 -0.7 209,122 - MPMX19_06936 0.61 -0.9 209,122 - MPMX19_06936 0.61 -1.5 209,122 - MPMX19_06936 0.61 -0.9 209,322 + MPMX19_06936 0.89 -1.0 209,322 + MPMX19_06936 0.89 -1.2 209,322 + MPMX19_06936 0.89 -1.2 209,323 - MPMX19_06936 0.89 -0.3 209,323 - MPMX19_06936 0.89 -0.2 209,323 - MPMX19_06936 0.89 -0.6 209,323 - MPMX19_06936 0.89 -0.4 209,323 - MPMX19_06936 0.89 -0.3 209,323 - MPMX19_06936 0.89 -0.8 209,467 + +0.1 209,467 + +0.8 209,468 - -0.4 209,468 - +0.6 209,479 - -0.8 209,635 + -0.3 209,635 + -0.8 209,635 + +1.3 209,635 + -0.9 209,635 + -0.7 209,635 + -0.6 209,635 + -0.9 209,635 + -0.4 209,635 + +0.6 209,635 + +0.4 209,635 + -0.6 209,635 + +0.2 209,636 - +0.0 209,636 - -0.2 209,636 - -0.6 209,636 - -0.1 209,636 - +1.0 209,636 - -0.3 209,636 - -0.6 209,636 - +1.1 209,636 - -1.1 209,636 - +0.1 209,636 - -1.2 209,636 - -0.2 209,638 + +0.0 209,638 + +0.4 209,639 - -2.8 209,639 - -1.0 209,686 + MPMX19_06937 0.12 -1.6 209,686 + MPMX19_06937 0.12 +0.4 209,686 + MPMX19_06937 0.12 +0.6 209,686 + MPMX19_06937 0.12 -1.0 209,686 + MPMX19_06937 0.12 +1.5 209,686 + MPMX19_06937 0.12 -2.1 209,686 + MPMX19_06937 0.12 -0.2 209,686 + MPMX19_06937 0.12 -0.9 209,686 + MPMX19_06937 0.12 -1.9 209,686 + MPMX19_06937 0.12 -0.9 209,686 + MPMX19_06937 0.12 -0.6 209,686 + MPMX19_06937 0.12 +2.2 209,686 + MPMX19_06937 0.12 -1.0 209,686 + MPMX19_06937 0.12 +0.6 209,686 + MPMX19_06937 0.12 +0.0 209,686 + MPMX19_06937 0.12 -0.6 209,687 - MPMX19_06937 0.12 -0.8 209,687 - MPMX19_06937 0.12 +0.0 209,687 - MPMX19_06937 0.12 -0.9 209,687 - MPMX19_06937 0.12 +0.1 209,687 - MPMX19_06937 0.12 -0.0 209,687 - MPMX19_06937 0.12 -0.6 209,687 - MPMX19_06937 0.12 -0.8 209,687 - MPMX19_06937 0.12 -0.1 209,687 - MPMX19_06937 0.12 +0.2 209,687 - MPMX19_06937 0.12 -2.1 209,821 + MPMX19_06937 0.22 -0.5 209,821 + MPMX19_06937 0.22 -0.4 209,821 + MPMX19_06937 0.22 -0.2 209,821 + MPMX19_06937 0.22 -1.6 209,822 - MPMX19_06937 0.22 -1.4 209,929 + MPMX19_06937 0.31 +0.6 209,930 - MPMX19_06937 0.31 +0.8 209,930 - MPMX19_06937 0.31 -0.1 209,930 - MPMX19_06937 0.31 -1.3 209,930 - MPMX19_06937 0.31 -0.7 210,133 + MPMX19_06937 0.47 -0.9 210,133 + MPMX19_06937 0.47 -0.9 210,133 + MPMX19_06937 0.47 -0.2 210,134 - MPMX19_06937 0.47 -0.6 210,134 - MPMX19_06937 0.47 +0.3 210,134 - MPMX19_06937 0.47 -2.0 210,245 - MPMX19_06937 0.55 -0.1 210,262 + MPMX19_06937 0.57 -1.7 210,262 + MPMX19_06937 0.57 +0.5 210,262 + MPMX19_06937 0.57 -1.7 210,262 + MPMX19_06937 0.57 +0.1 210,262 + MPMX19_06937 0.57 -1.6 210,262 + MPMX19_06937 0.57 +0.6 210,263 - MPMX19_06937 0.57 -0.8 210,263 - MPMX19_06937 0.57 +0.7 210,319 + MPMX19_06937 0.61 -0.3 210,319 + MPMX19_06937 0.61 -0.1 210,319 + MPMX19_06937 0.61 -1.1 210,319 + MPMX19_06937 0.61 -0.8 210,319 + MPMX19_06937 0.61 +0.4 210,319 + MPMX19_06937 0.61 -0.6 210,319 + MPMX19_06937 0.61 -2.5 210,320 - MPMX19_06937 0.61 -1.0 210,320 - MPMX19_06937 0.61 +0.1 210,320 - MPMX19_06937 0.61 -2.6 210,320 - MPMX19_06937 0.61 -1.0 210,320 - MPMX19_06937 0.61 -1.2 210,320 - MPMX19_06937 0.61 -1.9 210,320 - MPMX19_06937 0.61 -0.6 210,320 - MPMX19_06937 0.61 -0.8 210,328 + MPMX19_06937 0.62 -1.1 210,328 + MPMX19_06937 0.62 +1.4 210,328 + MPMX19_06937 0.62 -1.0 210,328 + MPMX19_06937 0.62 +0.6 210,329 - MPMX19_06937 0.62 -0.2 210,493 + MPMX19_06937 0.75 -1.0 210,493 + MPMX19_06937 0.75 +1.3 210,493 + MPMX19_06937 0.75 +0.4 210,494 - MPMX19_06937 0.75 -0.9 210,939 + -1.2 210,939 + +1.4 210,940 - -1.7
Or see this region's nucleotide sequence