Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06855

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06854 and MPMX19_06855 are separated by 306 nucleotidesMPMX19_06855 and MPMX19_06856 are separated by 35 nucleotides MPMX19_06854: MPMX19_06854 - Acetylornithine deacetylase, at 122,309 to 123,433 _06854 MPMX19_06855: MPMX19_06855 - hypothetical protein, at 123,740 to 124,699 _06855 MPMX19_06856: MPMX19_06856 - Riboflavin transporter, at 124,735 to 125,712 _06856 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 122.751 kb on + strand, within MPMX19_06854at 122.751 kb on + strand, within MPMX19_06854at 122.752 kb on - strand, within MPMX19_06854at 123.042 kb on + strand, within MPMX19_06854at 123.043 kb on - strand, within MPMX19_06854at 123.243 kb on + strand, within MPMX19_06854at 123.243 kb on + strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.540 kb on + strandat 123.540 kb on + strandat 123.540 kb on + strandat 123.540 kb on + strandat 123.541 kb on - strandat 123.541 kb on - strandat 123.541 kb on - strandat 123.649 kb on + strandat 124.148 kb on + strand, within MPMX19_06855at 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.670 kb on + strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.671 kb on - strandat 124.672 kb on + strandat 124.672 kb on + strandat 124.672 kb on + strandat 124.672 kb on + strandat 124.672 kb on + strandat 124.672 kb on + strandat 124.672 kb on + strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.673 kb on - strandat 124.963 kb on + strand, within MPMX19_06856at 124.963 kb on + strand, within MPMX19_06856at 124.964 kb on - strand, within MPMX19_06856at 124.964 kb on - strand, within MPMX19_06856at 125.038 kb on + strand, within MPMX19_06856at 125.039 kb on - strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.081 kb on - strand, within MPMX19_06856at 125.081 kb on - strand, within MPMX19_06856at 125.081 kb on - strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.548 kb on + strand, within MPMX19_06856at 125.549 kb on - strand, within MPMX19_06856at 125.586 kb on + strand, within MPMX19_06856at 125.587 kb on - strand, within MPMX19_06856

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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122,751 + MPMX19_06854 0.39 -0.4
122,751 + MPMX19_06854 0.39 -0.6
122,752 - MPMX19_06854 0.39 -0.1
123,042 + MPMX19_06854 0.65 -0.2
123,043 - MPMX19_06854 0.65 -0.8
123,243 + MPMX19_06854 0.83 -0.5
123,243 + MPMX19_06854 0.83 +2.2
123,244 - MPMX19_06854 0.83 -0.6
123,244 - MPMX19_06854 0.83 -0.4
123,244 - MPMX19_06854 0.83 -0.8
123,244 - MPMX19_06854 0.83 -1.2
123,540 + +0.1
123,540 + -1.0
123,540 + +0.5
123,540 + -0.7
123,541 - -0.1
123,541 - -0.7
123,541 - +0.0
123,649 + +0.1
124,148 + MPMX19_06855 0.42 +1.6
124,670 + +0.0
124,670 + +0.5
124,670 + +0.1
124,670 + -0.9
124,670 + +0.8
124,670 + -0.9
124,670 + -0.2
124,670 + -0.4
124,670 + -2.1
124,670 + -0.2
124,671 - -1.6
124,671 - -1.1
124,671 - +1.3
124,671 - -0.9
124,671 - -1.0
124,671 - +1.0
124,671 - +0.3
124,671 - -0.8
124,671 - +0.6
124,671 - -0.0
124,672 + -0.3
124,672 + -0.1
124,672 + +0.4
124,672 + +0.2
124,672 + -0.1
124,672 + -0.7
124,672 + -2.0
124,673 - -0.0
124,673 - -0.1
124,673 - -0.4
124,673 - +0.3
124,673 - +0.4
124,673 - -0.7
124,673 - -1.4
124,673 - -1.2
124,673 - -2.0
124,963 + MPMX19_06856 0.23 -0.3
124,963 + MPMX19_06856 0.23 +1.0
124,964 - MPMX19_06856 0.23 +0.1
124,964 - MPMX19_06856 0.23 -0.5
125,038 + MPMX19_06856 0.31 -0.6
125,039 - MPMX19_06856 0.31 -0.0
125,080 + MPMX19_06856 0.35 -0.2
125,080 + MPMX19_06856 0.35 -0.0
125,080 + MPMX19_06856 0.35 +0.4
125,080 + MPMX19_06856 0.35 +0.8
125,081 - MPMX19_06856 0.35 +1.0
125,081 - MPMX19_06856 0.35 +0.1
125,081 - MPMX19_06856 0.35 +0.3
125,371 + MPMX19_06856 0.65 +0.2
125,371 + MPMX19_06856 0.65 +1.4
125,371 + MPMX19_06856 0.65 +0.4
125,371 + MPMX19_06856 0.65 -1.6
125,371 + MPMX19_06856 0.65 +1.0
125,372 - MPMX19_06856 0.65 -0.2
125,372 - MPMX19_06856 0.65 -1.1
125,372 - MPMX19_06856 0.65 +1.2
125,372 - MPMX19_06856 0.65 -0.0
125,372 - MPMX19_06856 0.65 -0.3
125,372 - MPMX19_06856 0.65 +0.5
125,372 - MPMX19_06856 0.65 -0.7
125,372 - MPMX19_06856 0.65 -1.6
125,548 + MPMX19_06856 0.83 -0.1
125,549 - MPMX19_06856 0.83 -1.0
125,586 + MPMX19_06856 0.87 +0.8
125,587 - MPMX19_06856 0.87 -1.9

Or see this region's nucleotide sequence