Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06023

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06022 and MPMX19_06023 are separated by 109 nucleotidesMPMX19_06023 and MPMX19_06024 are separated by 5 nucleotidesMPMX19_06024 and MPMX19_06025 are separated by 28 nucleotides MPMX19_06022: MPMX19_06022 - Bicyclomycin resistance protein, at 175,082 to 176,308 _06022 MPMX19_06023: MPMX19_06023 - Putative aliphatic sulfonates-binding protein, at 176,418 to 177,500 _06023 MPMX19_06024: MPMX19_06024 - hypothetical protein, at 177,506 to 177,823 _06024 MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892 _06025 Position (kb) 176 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.745 kb on + strand, within MPMX19_06022at 175.746 kb on - strand, within MPMX19_06022at 175.746 kb on - strand, within MPMX19_06022at 175.754 kb on + strand, within MPMX19_06022at 175.754 kb on + strand, within MPMX19_06022at 175.754 kb on + strand, within MPMX19_06022at 175.754 kb on + strand, within MPMX19_06022at 175.755 kb on - strand, within MPMX19_06022at 175.755 kb on - strand, within MPMX19_06022at 175.755 kb on - strand, within MPMX19_06022at 175.755 kb on - strand, within MPMX19_06022at 175.778 kb on + strand, within MPMX19_06022at 175.778 kb on + strand, within MPMX19_06022at 175.778 kb on + strand, within MPMX19_06022at 175.778 kb on + strand, within MPMX19_06022at 175.778 kb on + strand, within MPMX19_06022at 175.778 kb on + strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.779 kb on - strand, within MPMX19_06022at 175.820 kb on + strand, within MPMX19_06022at 175.820 kb on + strand, within MPMX19_06022at 175.820 kb on + strand, within MPMX19_06022at 175.820 kb on + strand, within MPMX19_06022at 175.820 kb on + strand, within MPMX19_06022at 175.821 kb on - strand, within MPMX19_06022at 175.821 kb on - strand, within MPMX19_06022at 175.853 kb on + strand, within MPMX19_06022at 175.853 kb on + strand, within MPMX19_06022at 175.853 kb on + strand, within MPMX19_06022at 175.853 kb on + strand, within MPMX19_06022at 175.853 kb on + strand, within MPMX19_06022at 175.853 kb on + strand, within MPMX19_06022at 175.854 kb on - strand, within MPMX19_06022at 175.854 kb on - strand, within MPMX19_06022at 175.854 kb on - strand, within MPMX19_06022at 175.854 kb on - strand, within MPMX19_06022at 175.854 kb on - strand, within MPMX19_06022at 176.323 kb on + strandat 176.323 kb on + strandat 176.323 kb on + strandat 176.323 kb on + strandat 176.324 kb on - strandat 176.391 kb on - strandat 176.391 kb on - strandat 176.391 kb on - strandat 176.391 kb on - strandat 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.580 kb on + strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.581 kb on - strand, within MPMX19_06023at 176.582 kb on + strand, within MPMX19_06023at 176.582 kb on + strand, within MPMX19_06023at 176.583 kb on - strand, within MPMX19_06023at 176.583 kb on - strand, within MPMX19_06023at 176.583 kb on - strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.610 kb on + strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.611 kb on - strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.727 kb on + strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 176.728 kb on - strand, within MPMX19_06023at 177.272 kb on + strand, within MPMX19_06023at 177.272 kb on + strand, within MPMX19_06023at 177.809 kb on + strandat 177.809 kb on + strandat 177.809 kb on + strandat 177.809 kb on + strandat 177.809 kb on + strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.810 kb on - strandat 177.821 kb on + strandat 177.821 kb on + strandat 177.821 kb on - strandat 177.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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175,745 + MPMX19_06022 0.54 -1.5
175,746 - MPMX19_06022 0.54 -0.3
175,746 - MPMX19_06022 0.54 -0.7
175,754 + MPMX19_06022 0.55 -0.6
175,754 + MPMX19_06022 0.55 +0.6
175,754 + MPMX19_06022 0.55 -0.3
175,754 + MPMX19_06022 0.55 -1.4
175,755 - MPMX19_06022 0.55 -1.1
175,755 - MPMX19_06022 0.55 -2.2
175,755 - MPMX19_06022 0.55 -2.1
175,755 - MPMX19_06022 0.55 +0.5
175,778 + MPMX19_06022 0.57 +1.0
175,778 + MPMX19_06022 0.57 -0.9
175,778 + MPMX19_06022 0.57 -0.3
175,778 + MPMX19_06022 0.57 +0.1
175,778 + MPMX19_06022 0.57 -0.5
175,778 + MPMX19_06022 0.57 -0.7
175,779 - MPMX19_06022 0.57 +0.2
175,779 - MPMX19_06022 0.57 -0.3
175,779 - MPMX19_06022 0.57 +0.7
175,779 - MPMX19_06022 0.57 +1.4
175,779 - MPMX19_06022 0.57 -0.4
175,779 - MPMX19_06022 0.57 +0.5
175,779 - MPMX19_06022 0.57 +0.9
175,779 - MPMX19_06022 0.57 +0.1
175,779 - MPMX19_06022 0.57 -0.3
175,779 - MPMX19_06022 0.57 -0.6
175,779 - MPMX19_06022 0.57 -0.0
175,779 - MPMX19_06022 0.57 -1.1
175,779 - MPMX19_06022 0.57 -0.6
175,820 + MPMX19_06022 0.60 +0.3
175,820 + MPMX19_06022 0.60 +0.8
175,820 + MPMX19_06022 0.60 -1.5
175,820 + MPMX19_06022 0.60 +0.1
175,820 + MPMX19_06022 0.60 -0.0
175,821 - MPMX19_06022 0.60 -1.6
175,821 - MPMX19_06022 0.60 +0.0
175,853 + MPMX19_06022 0.63 +0.5
175,853 + MPMX19_06022 0.63 +0.1
175,853 + MPMX19_06022 0.63 -1.4
175,853 + MPMX19_06022 0.63 -0.9
175,853 + MPMX19_06022 0.63 -0.5
175,853 + MPMX19_06022 0.63 -0.0
175,854 - MPMX19_06022 0.63 -0.6
175,854 - MPMX19_06022 0.63 +0.2
175,854 - MPMX19_06022 0.63 +0.1
175,854 - MPMX19_06022 0.63 +1.7
175,854 - MPMX19_06022 0.63 -1.3
176,323 + -0.0
176,323 + -1.8
176,323 + +0.5
176,323 + -0.2
176,324 - -0.5
176,391 - -1.8
176,391 - -1.2
176,391 - -0.6
176,391 - +0.7
176,580 + MPMX19_06023 0.15 +0.1
176,580 + MPMX19_06023 0.15 +1.1
176,580 + MPMX19_06023 0.15 -0.2
176,580 + MPMX19_06023 0.15 -0.3
176,580 + MPMX19_06023 0.15 -0.0
176,580 + MPMX19_06023 0.15 +1.0
176,580 + MPMX19_06023 0.15 +1.3
176,581 - MPMX19_06023 0.15 -2.1
176,581 - MPMX19_06023 0.15 +0.5
176,581 - MPMX19_06023 0.15 +0.5
176,581 - MPMX19_06023 0.15 -0.2
176,581 - MPMX19_06023 0.15 +0.1
176,581 - MPMX19_06023 0.15 -0.5
176,581 - MPMX19_06023 0.15 +2.7
176,581 - MPMX19_06023 0.15 +0.8
176,581 - MPMX19_06023 0.15 -0.8
176,581 - MPMX19_06023 0.15 -1.5
176,582 + MPMX19_06023 0.15 -2.6
176,582 + MPMX19_06023 0.15 +0.1
176,583 - MPMX19_06023 0.15 -0.6
176,583 - MPMX19_06023 0.15 -1.6
176,583 - MPMX19_06023 0.15 -0.4
176,610 + MPMX19_06023 0.18 -1.6
176,610 + MPMX19_06023 0.18 +0.8
176,610 + MPMX19_06023 0.18 -0.8
176,610 + MPMX19_06023 0.18 -1.1
176,610 + MPMX19_06023 0.18 -1.9
176,610 + MPMX19_06023 0.18 -2.9
176,610 + MPMX19_06023 0.18 +0.1
176,610 + MPMX19_06023 0.18 -0.9
176,610 + MPMX19_06023 0.18 -0.0
176,610 + MPMX19_06023 0.18 -0.4
176,610 + MPMX19_06023 0.18 -2.0
176,610 + MPMX19_06023 0.18 +0.0
176,610 + MPMX19_06023 0.18 -0.9
176,610 + MPMX19_06023 0.18 -0.3
176,610 + MPMX19_06023 0.18 +1.0
176,611 - MPMX19_06023 0.18 +0.1
176,611 - MPMX19_06023 0.18 -2.1
176,611 - MPMX19_06023 0.18 +2.4
176,611 - MPMX19_06023 0.18 +0.6
176,611 - MPMX19_06023 0.18 -0.9
176,611 - MPMX19_06023 0.18 -0.3
176,611 - MPMX19_06023 0.18 +0.8
176,611 - MPMX19_06023 0.18 +0.8
176,611 - MPMX19_06023 0.18 +1.1
176,611 - MPMX19_06023 0.18 -1.0
176,611 - MPMX19_06023 0.18 +0.2
176,611 - MPMX19_06023 0.18 -1.3
176,611 - MPMX19_06023 0.18 -0.2
176,611 - MPMX19_06023 0.18 -0.4
176,727 + MPMX19_06023 0.29 -1.2
176,727 + MPMX19_06023 0.29 +0.3
176,727 + MPMX19_06023 0.29 -0.2
176,727 + MPMX19_06023 0.29 +0.1
176,727 + MPMX19_06023 0.29 +0.3
176,727 + MPMX19_06023 0.29 -1.1
176,727 + MPMX19_06023 0.29 -1.9
176,727 + MPMX19_06023 0.29 -1.1
176,727 + MPMX19_06023 0.29 -1.3
176,727 + MPMX19_06023 0.29 -1.8
176,727 + MPMX19_06023 0.29 -0.6
176,727 + MPMX19_06023 0.29 -1.5
176,728 - MPMX19_06023 0.29 -1.4
176,728 - MPMX19_06023 0.29 -1.6
176,728 - MPMX19_06023 0.29 -0.4
176,728 - MPMX19_06023 0.29 +0.5
176,728 - MPMX19_06023 0.29 -0.1
176,728 - MPMX19_06023 0.29 +0.0
176,728 - MPMX19_06023 0.29 -0.5
176,728 - MPMX19_06023 0.29 -0.9
176,728 - MPMX19_06023 0.29 -0.6
176,728 - MPMX19_06023 0.29 +0.9
176,728 - MPMX19_06023 0.29 +1.0
177,272 + MPMX19_06023 0.79 -0.2
177,272 + MPMX19_06023 0.79 -0.8
177,809 + -0.5
177,809 + +1.0
177,809 + -1.9
177,809 + -0.8
177,809 + -2.5
177,810 - -0.8
177,810 - +2.0
177,810 - +0.7
177,810 - -1.2
177,810 - +0.5
177,810 - -0.0
177,810 - -0.8
177,810 - -0.7
177,810 - +0.4
177,821 + +0.1
177,821 + -0.3
177,821 - +2.3
177,822 - -1.3

Or see this region's nucleotide sequence