Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05994 and MPMX19_05995 are separated by 487 nucleotides MPMX19_05995 and MPMX19_05996 are separated by 114 nucleotides MPMX19_05996 and MPMX19_05997 are separated by 55 nucleotides
MPMX19_05994: MPMX19_05994 - hypothetical protein, at 147,637 to 148,494
_05994
MPMX19_05995: MPMX19_05995 - hypothetical protein, at 148,982 to 150,598
_05995
MPMX19_05996: MPMX19_05996 - Dodecaprenyl-phosphate galacturonate synthase, at 150,713 to 151,474
_05996
MPMX19_05997: MPMX19_05997 - hypothetical protein, at 151,530 to 151,865
_05997
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 148.643 kb on - strand at 148.643 kb on - strand at 148.673 kb on - strand at 148.673 kb on - strand at 148.673 kb on - strand at 149.009 kb on + strand at 149.009 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.781 kb on - strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.586 kb on + strand at 150.596 kb on + strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.738 kb on - strand at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.329 kb on - strand, within MPMX19_05996 at 151.329 kb on - strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.424 kb on + strand at 151.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 148,643 - +0.3 148,643 - -1.9 148,673 - +1.6 148,673 - -1.5 148,673 - -0.6 149,009 + -2.1 149,009 + +0.4 149,141 + -0.3 149,141 + -0.7 149,141 + +0.7 149,141 + -0.3 149,141 + -1.9 149,141 + -0.8 149,141 + +1.0 149,141 + -0.9 149,141 + -0.3 149,141 + +0.9 149,141 + -0.6 149,141 + -1.1 149,141 + +0.3 149,141 + -1.3 149,141 + -1.0 149,141 + +0.9 149,142 - +0.9 149,142 - +0.4 149,142 - -1.2 149,142 - -0.3 149,142 - -0.6 149,142 - -0.2 149,142 - -0.9 149,142 - -0.2 149,142 - -0.7 149,142 - +1.3 149,142 - -0.8 149,142 - +0.1 149,142 - +1.5 149,720 + MPMX19_05995 0.46 +1.7 149,720 + MPMX19_05995 0.46 -2.8 149,720 + MPMX19_05995 0.46 +0.3 149,720 + MPMX19_05995 0.46 -0.4 149,720 + MPMX19_05995 0.46 -0.6 149,721 - MPMX19_05995 0.46 -1.5 149,721 - MPMX19_05995 0.46 +0.0 149,721 - MPMX19_05995 0.46 -0.6 149,721 - MPMX19_05995 0.46 -1.3 149,721 - MPMX19_05995 0.46 -0.9 149,721 - MPMX19_05995 0.46 -0.1 149,729 + MPMX19_05995 0.46 +0.5 149,729 + MPMX19_05995 0.46 +0.5 149,729 + MPMX19_05995 0.46 -0.5 149,729 + MPMX19_05995 0.46 +0.2 149,729 + MPMX19_05995 0.46 -0.4 149,730 - MPMX19_05995 0.46 -1.7 149,730 - MPMX19_05995 0.46 -0.0 149,730 - MPMX19_05995 0.46 +1.0 149,730 - MPMX19_05995 0.46 -0.9 149,730 - MPMX19_05995 0.46 +0.1 149,730 - MPMX19_05995 0.46 -0.7 149,730 - MPMX19_05995 0.46 +0.2 149,730 - MPMX19_05995 0.46 -0.0 149,730 - MPMX19_05995 0.46 +0.1 149,730 - MPMX19_05995 0.46 -0.3 149,730 - MPMX19_05995 0.46 -0.9 149,780 + MPMX19_05995 0.49 -1.4 149,780 + MPMX19_05995 0.49 -0.1 149,780 + MPMX19_05995 0.49 -0.3 149,780 + MPMX19_05995 0.49 -0.3 149,781 - MPMX19_05995 0.49 -1.0 149,822 + MPMX19_05995 0.52 -1.1 149,822 + MPMX19_05995 0.52 +0.4 149,822 + MPMX19_05995 0.52 -0.6 149,822 + MPMX19_05995 0.52 +0.4 149,822 + MPMX19_05995 0.52 -0.3 149,822 + MPMX19_05995 0.52 +1.0 149,822 + MPMX19_05995 0.52 -0.2 149,822 + MPMX19_05995 0.52 -0.5 149,822 + MPMX19_05995 0.52 -1.6 149,822 + MPMX19_05995 0.52 +0.7 149,822 + MPMX19_05995 0.52 +0.5 149,822 + MPMX19_05995 0.52 -1.4 149,823 - MPMX19_05995 0.52 +0.6 149,823 - MPMX19_05995 0.52 -1.0 149,823 - MPMX19_05995 0.52 -0.3 149,823 - MPMX19_05995 0.52 -0.3 149,823 - MPMX19_05995 0.52 +0.3 149,823 - MPMX19_05995 0.52 +0.1 149,823 - MPMX19_05995 0.52 +0.7 149,823 - MPMX19_05995 0.52 -0.5 149,823 - MPMX19_05995 0.52 -2.0 149,823 - MPMX19_05995 0.52 -2.4 149,823 - MPMX19_05995 0.52 -0.8 149,823 - MPMX19_05995 0.52 -0.5 150,551 + -1.3 150,551 + +0.3 150,551 + -1.1 150,551 + +0.3 150,551 + +0.1 150,551 + +1.3 150,551 + -0.6 150,551 + -0.3 150,551 + -0.3 150,551 + +1.0 150,551 + -0.1 150,551 + -0.1 150,551 + -0.4 150,552 - +0.2 150,552 - +0.1 150,552 - -0.9 150,552 - -0.5 150,552 - -0.8 150,552 - +0.7 150,552 - +1.3 150,552 - +0.7 150,552 - +0.0 150,552 - +0.3 150,552 - +0.5 150,552 - -0.4 150,552 - +0.2 150,552 - -0.3 150,586 + -0.3 150,596 + +0.0 150,597 - -0.8 150,597 - -1.1 150,597 - +1.1 150,597 - +0.5 150,597 - -0.3 150,597 - -0.6 150,738 - +0.8 151,328 + MPMX19_05996 0.81 -0.9 151,328 + MPMX19_05996 0.81 -0.5 151,328 + MPMX19_05996 0.81 +0.1 151,328 + MPMX19_05996 0.81 -0.3 151,328 + MPMX19_05996 0.81 +0.7 151,328 + MPMX19_05996 0.81 -0.1 151,328 + MPMX19_05996 0.81 -0.1 151,328 + MPMX19_05996 0.81 +0.8 151,328 + MPMX19_05996 0.81 -0.6 151,328 + MPMX19_05996 0.81 +1.1 151,328 + MPMX19_05996 0.81 -1.0 151,328 + MPMX19_05996 0.81 -0.3 151,328 + MPMX19_05996 0.81 +0.4 151,329 - MPMX19_05996 0.81 +1.7 151,329 - MPMX19_05996 0.81 -1.6 151,373 + MPMX19_05996 0.87 -1.5 151,373 + MPMX19_05996 0.87 +0.4 151,373 + MPMX19_05996 0.87 -0.6 151,424 + +0.2 151,424 + -0.9
Or see this region's nucleotide sequence