Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05860

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05859 and MPMX19_05860 are separated by 48 nucleotidesMPMX19_05860 and MPMX19_05861 overlap by 1 nucleotidesMPMX19_05861 and MPMX19_05862 are separated by 5 nucleotides MPMX19_05859: MPMX19_05859 - Beta-ketoadipyl-CoA thiolase, at 594,005 to 595,204 _05859 MPMX19_05860: MPMX19_05860 - 3-oxoadipate enol-lactonase 2, at 595,253 to 596,050 _05860 MPMX19_05861: MPMX19_05861 - hypothetical protein, at 596,050 to 596,463 _05861 MPMX19_05862: MPMX19_05862 - 3-carboxy-cis,cis-muconate cycloisomerase, at 596,469 to 597,839 _05862 Position (kb) 595 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 594.476 kb on + strand, within MPMX19_05859at 594.476 kb on + strand, within MPMX19_05859at 594.476 kb on + strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 595.202 kb on + strandat 595.202 kb on + strandat 595.203 kb on - strandat 595.203 kb on - strandat 595.203 kb on - strandat 595.203 kb on - strandat 595.203 kb on - strandat 595.289 kb on + strandat 595.289 kb on + strandat 595.289 kb on + strandat 595.289 kb on + strandat 595.289 kb on + strandat 595.289 kb on + strandat 595.290 kb on - strandat 595.409 kb on + strand, within MPMX19_05860at 595.409 kb on + strand, within MPMX19_05860at 595.409 kb on + strand, within MPMX19_05860at 595.409 kb on + strand, within MPMX19_05860at 595.410 kb on - strand, within MPMX19_05860at 595.410 kb on - strand, within MPMX19_05860at 595.466 kb on + strand, within MPMX19_05860at 595.769 kb on + strand, within MPMX19_05860at 595.769 kb on + strand, within MPMX19_05860at 595.770 kb on - strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.805 kb on + strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 595.806 kb on - strand, within MPMX19_05860at 596.083 kb on + strandat 596.083 kb on + strandat 596.083 kb on + strandat 596.083 kb on + strandat 596.083 kb on + strandat 596.083 kb on + strandat 596.084 kb on - strandat 596.084 kb on - strandat 596.084 kb on - strandat 596.084 kb on - strandat 596.084 kb on - strandat 596.084 kb on - strandat 596.370 kb on + strand, within MPMX19_05861at 596.370 kb on + strand, within MPMX19_05861at 596.371 kb on - strand, within MPMX19_05861at 596.371 kb on - strand, within MPMX19_05861at 596.371 kb on - strand, within MPMX19_05861at 596.371 kb on - strand, within MPMX19_05861at 596.371 kb on - strand, within MPMX19_05861at 596.371 kb on - strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.374 kb on + strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.375 kb on - strand, within MPMX19_05861at 596.406 kb on - strand, within MPMX19_05861at 596.425 kb on + strandat 596.425 kb on + strandat 596.426 kb on - strandat 596.426 kb on - strandat 596.426 kb on - strandat 596.554 kb on + strandat 596.554 kb on + strandat 596.554 kb on + strandat 596.554 kb on + strandat 596.554 kb on + strandat 596.554 kb on + strandat 596.555 kb on - strandat 596.555 kb on - strandat 596.555 kb on - strandat 596.664 kb on + strand, within MPMX19_05862at 596.664 kb on + strand, within MPMX19_05862at 596.664 kb on + strand, within MPMX19_05862at 596.664 kb on + strand, within MPMX19_05862at 596.665 kb on - strand, within MPMX19_05862at 596.775 kb on + strand, within MPMX19_05862at 596.775 kb on + strand, within MPMX19_05862at 596.775 kb on + strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862at 596.776 kb on - strand, within MPMX19_05862

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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594,476 + MPMX19_05859 0.39 -2.2
594,476 + MPMX19_05859 0.39 -0.6
594,476 + MPMX19_05859 0.39 -0.1
594,477 - MPMX19_05859 0.39 +0.8
594,477 - MPMX19_05859 0.39 -0.5
594,477 - MPMX19_05859 0.39 -0.4
594,477 - MPMX19_05859 0.39 +1.3
594,477 - MPMX19_05859 0.39 -1.7
594,477 - MPMX19_05859 0.39 -0.3
594,477 - MPMX19_05859 0.39 +1.3
594,477 - MPMX19_05859 0.39 -1.7
594,477 - MPMX19_05859 0.39 -0.3
594,477 - MPMX19_05859 0.39 -0.5
595,202 + -1.1
595,202 + -3.6
595,203 - -1.1
595,203 - +0.4
595,203 - -0.5
595,203 - -0.5
595,203 - +0.3
595,289 + -0.5
595,289 + -0.8
595,289 + +0.5
595,289 + -0.8
595,289 + +1.3
595,289 + -0.2
595,290 - +0.3
595,409 + MPMX19_05860 0.20 -2.1
595,409 + MPMX19_05860 0.20 +1.1
595,409 + MPMX19_05860 0.20 +0.9
595,409 + MPMX19_05860 0.20 -1.5
595,410 - MPMX19_05860 0.20 -1.0
595,410 - MPMX19_05860 0.20 +0.1
595,466 + MPMX19_05860 0.27 -0.3
595,769 + MPMX19_05860 0.65 -0.0
595,769 + MPMX19_05860 0.65 +0.1
595,770 - MPMX19_05860 0.65 +0.1
595,805 + MPMX19_05860 0.69 -0.5
595,805 + MPMX19_05860 0.69 +0.7
595,805 + MPMX19_05860 0.69 +0.3
595,805 + MPMX19_05860 0.69 -0.7
595,805 + MPMX19_05860 0.69 +0.3
595,805 + MPMX19_05860 0.69 +0.4
595,805 + MPMX19_05860 0.69 +0.9
595,805 + MPMX19_05860 0.69 +0.8
595,805 + MPMX19_05860 0.69 +0.7
595,805 + MPMX19_05860 0.69 -0.2
595,805 + MPMX19_05860 0.69 -0.0
595,805 + MPMX19_05860 0.69 -1.1
595,805 + MPMX19_05860 0.69 +1.4
595,806 - MPMX19_05860 0.69 -0.5
595,806 - MPMX19_05860 0.69 +1.0
595,806 - MPMX19_05860 0.69 +0.3
595,806 - MPMX19_05860 0.69 -0.9
595,806 - MPMX19_05860 0.69 -0.7
595,806 - MPMX19_05860 0.69 +1.0
595,806 - MPMX19_05860 0.69 -0.1
595,806 - MPMX19_05860 0.69 -0.9
595,806 - MPMX19_05860 0.69 -1.1
595,806 - MPMX19_05860 0.69 -1.7
595,806 - MPMX19_05860 0.69 -0.1
595,806 - MPMX19_05860 0.69 -2.1
596,083 + -0.9
596,083 + +0.0
596,083 + +0.6
596,083 + +0.1
596,083 + +0.2
596,083 + +0.2
596,084 - -0.7
596,084 - +0.3
596,084 - -0.6
596,084 - -1.3
596,084 - -1.3
596,084 - -0.6
596,370 + MPMX19_05861 0.77 +1.1
596,370 + MPMX19_05861 0.77 -1.1
596,371 - MPMX19_05861 0.78 +0.2
596,371 - MPMX19_05861 0.78 -0.7
596,371 - MPMX19_05861 0.78 -0.3
596,371 - MPMX19_05861 0.78 -0.8
596,371 - MPMX19_05861 0.78 +1.1
596,371 - MPMX19_05861 0.78 -0.9
596,374 + MPMX19_05861 0.78 +1.0
596,374 + MPMX19_05861 0.78 +0.1
596,374 + MPMX19_05861 0.78 -1.7
596,374 + MPMX19_05861 0.78 +0.1
596,374 + MPMX19_05861 0.78 +0.1
596,374 + MPMX19_05861 0.78 -0.1
596,374 + MPMX19_05861 0.78 +0.6
596,374 + MPMX19_05861 0.78 +0.7
596,374 + MPMX19_05861 0.78 -1.0
596,374 + MPMX19_05861 0.78 -0.9
596,374 + MPMX19_05861 0.78 -0.1
596,374 + MPMX19_05861 0.78 +0.3
596,374 + MPMX19_05861 0.78 -0.0
596,374 + MPMX19_05861 0.78 -1.1
596,374 + MPMX19_05861 0.78 -0.6
596,374 + MPMX19_05861 0.78 +1.0
596,374 + MPMX19_05861 0.78 -3.0
596,374 + MPMX19_05861 0.78 +0.4
596,374 + MPMX19_05861 0.78 -1.6
596,374 + MPMX19_05861 0.78 -0.7
596,374 + MPMX19_05861 0.78 -1.3
596,374 + MPMX19_05861 0.78 -0.2
596,374 + MPMX19_05861 0.78 -0.0
596,374 + MPMX19_05861 0.78 +0.2
596,374 + MPMX19_05861 0.78 +0.7
596,374 + MPMX19_05861 0.78 -0.1
596,374 + MPMX19_05861 0.78 +1.1
596,374 + MPMX19_05861 0.78 +3.0
596,374 + MPMX19_05861 0.78 -0.2
596,374 + MPMX19_05861 0.78 -0.3
596,374 + MPMX19_05861 0.78 -1.7
596,374 + MPMX19_05861 0.78 -0.8
596,374 + MPMX19_05861 0.78 -0.1
596,375 - MPMX19_05861 0.79 -0.7
596,375 - MPMX19_05861 0.79 -0.0
596,375 - MPMX19_05861 0.79 +0.5
596,375 - MPMX19_05861 0.79 +0.5
596,375 - MPMX19_05861 0.79 -1.4
596,375 - MPMX19_05861 0.79 -0.8
596,375 - MPMX19_05861 0.79 +0.7
596,375 - MPMX19_05861 0.79 +0.1
596,375 - MPMX19_05861 0.79 -1.0
596,375 - MPMX19_05861 0.79 -2.7
596,375 - MPMX19_05861 0.79 +1.0
596,375 - MPMX19_05861 0.79 -0.0
596,375 - MPMX19_05861 0.79 -0.5
596,375 - MPMX19_05861 0.79 -1.5
596,375 - MPMX19_05861 0.79 -1.0
596,375 - MPMX19_05861 0.79 -0.4
596,375 - MPMX19_05861 0.79 -1.4
596,375 - MPMX19_05861 0.79 +0.0
596,375 - MPMX19_05861 0.79 -1.8
596,375 - MPMX19_05861 0.79 -0.7
596,406 - MPMX19_05861 0.86 -0.3
596,425 + -1.1
596,425 + -0.9
596,426 - +0.3
596,426 - -0.8
596,426 - -0.6
596,554 + -0.0
596,554 + -1.3
596,554 + -2.9
596,554 + -0.2
596,554 + -0.5
596,554 + -1.0
596,555 - -0.2
596,555 - +1.3
596,555 - +0.5
596,664 + MPMX19_05862 0.14 +0.5
596,664 + MPMX19_05862 0.14 +0.2
596,664 + MPMX19_05862 0.14 +0.9
596,664 + MPMX19_05862 0.14 -0.1
596,665 - MPMX19_05862 0.14 -0.9
596,775 + MPMX19_05862 0.22 +0.5
596,775 + MPMX19_05862 0.22 -1.1
596,775 + MPMX19_05862 0.22 +0.7
596,776 - MPMX19_05862 0.22 -0.6
596,776 - MPMX19_05862 0.22 +0.9
596,776 - MPMX19_05862 0.22 -0.5
596,776 - MPMX19_05862 0.22 +0.3
596,776 - MPMX19_05862 0.22 +0.3
596,776 - MPMX19_05862 0.22 -1.3
596,776 - MPMX19_05862 0.22 -0.8

Or see this region's nucleotide sequence