Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05686 and MPMX19_05687 are separated by 90 nucleotides MPMX19_05687 and MPMX19_05688 overlap by 4 nucleotides MPMX19_05688 and MPMX19_05689 are separated by 205 nucleotides MPMX19_05689 and MPMX19_05690 are separated by 27 nucleotides
MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723
_05686
MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314
_05687
MPMX19_05688: MPMX19_05688 - Sensor histidine kinase RcsC, at 403,311 to 406,088
_05688
MPMX19_05689: MPMX19_05689 - hypothetical protein, at 406,294 to 406,467
_05689
MPMX19_05690: MPMX19_05690 - Protein phosphotransferase ChpT, at 406,495 to 407,178
_05690
Position (kb) 403
404
405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.888 kb on + strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.891 kb on - strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.375 kb on - strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.616 kb on - strand, within MPMX19_05688 at 403.616 kb on - strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.994 kb on - strand, within MPMX19_05688 at 403.994 kb on - strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.883 kb on - strand, within MPMX19_05688 at 404.927 kb on - strand, within MPMX19_05688 at 406.113 kb on + strand at 406.113 kb on + strand at 406.113 kb on + strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 402,422 + MPMX19_05686 0.17 +0.8 402,422 + MPMX19_05686 0.17 -1.3 402,422 + MPMX19_05686 0.17 -0.3 402,422 + MPMX19_05686 0.17 -2.3 402,422 + MPMX19_05686 0.17 -0.1 402,422 + MPMX19_05686 0.17 -0.8 402,423 - MPMX19_05686 0.18 +0.4 402,423 - MPMX19_05686 0.18 -1.1 402,423 - MPMX19_05686 0.18 -0.3 402,423 - MPMX19_05686 0.18 -0.2 402,423 - MPMX19_05686 0.18 -1.5 402,423 - MPMX19_05686 0.18 -0.7 402,888 + MPMX19_05687 0.15 +0.7 402,889 - MPMX19_05687 0.15 -1.3 402,889 - MPMX19_05687 0.15 -2.4 402,889 - MPMX19_05687 0.15 -0.7 402,890 + MPMX19_05687 0.15 +0.9 402,890 + MPMX19_05687 0.15 +0.4 402,890 + MPMX19_05687 0.15 -0.2 402,890 + MPMX19_05687 0.15 -0.5 402,891 - MPMX19_05687 0.15 -0.7 403,001 + MPMX19_05687 0.37 -0.2 403,001 + MPMX19_05687 0.37 -2.6 403,001 + MPMX19_05687 0.37 +0.6 403,001 + MPMX19_05687 0.37 -2.0 403,001 + MPMX19_05687 0.37 +0.1 403,001 + MPMX19_05687 0.37 -0.0 403,002 - MPMX19_05687 0.38 +0.7 403,002 - MPMX19_05687 0.38 -1.6 403,002 - MPMX19_05687 0.38 -1.2 403,002 - MPMX19_05687 0.38 -1.5 403,002 - MPMX19_05687 0.38 +0.1 403,002 - MPMX19_05687 0.38 +0.5 403,375 - +1.1 403,387 + -1.9 403,387 + -0.6 403,387 + -1.2 403,387 + +0.4 403,387 + -2.0 403,387 + -0.1 403,387 + -0.8 403,387 + +0.1 403,387 + -0.6 403,387 + -1.1 403,387 + +0.4 403,387 + +0.5 403,387 + +0.7 403,387 + -1.0 403,387 + -0.9 403,387 + -0.9 403,387 + +0.4 403,387 + -0.5 403,387 + -0.1 403,387 + -0.2 403,388 - -0.9 403,388 - -1.2 403,388 - -0.3 403,388 - -0.5 403,388 - -0.2 403,388 - +0.1 403,388 - -1.2 403,388 - +0.9 403,388 - +0.1 403,388 - +0.4 403,388 - -0.3 403,388 - -1.0 403,388 - +0.7 403,388 - -1.9 403,388 - +0.1 403,388 - -1.2 403,388 - -0.5 403,616 - MPMX19_05688 0.11 +0.1 403,616 - MPMX19_05688 0.11 +0.7 403,741 + MPMX19_05688 0.15 -0.3 403,741 + MPMX19_05688 0.15 -0.5 403,741 + MPMX19_05688 0.15 +1.3 403,741 + MPMX19_05688 0.15 -0.2 403,741 + MPMX19_05688 0.15 -1.5 403,741 + MPMX19_05688 0.15 -1.1 403,741 + MPMX19_05688 0.15 +0.1 403,741 + MPMX19_05688 0.15 -0.3 403,742 - MPMX19_05688 0.16 -1.3 403,742 - MPMX19_05688 0.16 +0.7 403,742 - MPMX19_05688 0.16 -0.3 403,742 - MPMX19_05688 0.16 +0.2 403,742 - MPMX19_05688 0.16 +1.1 403,742 - MPMX19_05688 0.16 -1.2 403,742 - MPMX19_05688 0.16 -1.1 403,742 - MPMX19_05688 0.16 -0.1 403,742 - MPMX19_05688 0.16 -1.6 403,742 - MPMX19_05688 0.16 -0.8 403,742 - MPMX19_05688 0.16 -0.6 403,742 - MPMX19_05688 0.16 -1.6 403,993 + MPMX19_05688 0.25 -2.8 403,993 + MPMX19_05688 0.25 -0.2 403,993 + MPMX19_05688 0.25 +0.5 403,993 + MPMX19_05688 0.25 -1.1 403,994 - MPMX19_05688 0.25 -1.3 403,994 - MPMX19_05688 0.25 -1.5 404,356 + MPMX19_05688 0.38 -2.3 404,356 + MPMX19_05688 0.38 -0.8 404,356 + MPMX19_05688 0.38 -2.4 404,356 + MPMX19_05688 0.38 -0.6 404,356 + MPMX19_05688 0.38 -0.3 404,356 + MPMX19_05688 0.38 -0.5 404,356 + MPMX19_05688 0.38 -0.9 404,356 + MPMX19_05688 0.38 +0.3 404,356 + MPMX19_05688 0.38 -0.3 404,356 + MPMX19_05688 0.38 +0.1 404,357 - MPMX19_05688 0.38 -1.4 404,357 - MPMX19_05688 0.38 -0.1 404,357 - MPMX19_05688 0.38 -1.4 404,357 - MPMX19_05688 0.38 -0.8 404,357 - MPMX19_05688 0.38 +0.3 404,357 - MPMX19_05688 0.38 -1.5 404,357 - MPMX19_05688 0.38 -1.7 404,357 - MPMX19_05688 0.38 -0.9 404,357 - MPMX19_05688 0.38 -1.3 404,357 - MPMX19_05688 0.38 -0.6 404,357 - MPMX19_05688 0.38 -1.4 404,357 - MPMX19_05688 0.38 -0.3 404,357 - MPMX19_05688 0.38 -0.6 404,883 - MPMX19_05688 0.57 -0.5 404,927 - MPMX19_05688 0.58 -0.1 406,113 + +0.7 406,113 + -0.3 406,113 + -1.7 406,114 - -1.5 406,114 - -0.3 406,114 - -0.2 406,114 - -1.0 406,114 - +0.8 406,114 - +0.1 406,114 - -2.8 406,114 - -0.5 406,114 - -0.3 406,182 + +0.9 406,182 + +0.3 406,182 + -1.3 406,182 + -1.8 406,182 + -0.2 406,182 + -1.3 406,183 - -0.6 406,183 - -0.5 406,183 - -1.3 406,183 - -1.0 406,183 - -1.1 406,183 - -0.3 406,183 - -0.3 406,209 + +0.5 406,209 + +0.7 406,209 + -0.1 406,209 + +0.1 406,209 + -0.8 406,209 + -0.1 406,210 - -0.3 406,210 - -1.4 406,210 - -1.5 406,210 - -1.4 406,210 - -0.5 406,210 - -0.7 406,210 - +0.7 406,220 + -1.8 406,220 + +0.3 406,220 + -0.8 406,220 + -1.0 406,220 + +0.2 406,220 + -1.7 406,220 + -0.7 406,220 + -0.2 406,220 + +0.5 406,220 + -0.7 406,220 + -1.3 406,220 + +0.6 406,220 + -1.6 406,220 + -0.6 406,220 + -1.3 406,220 + -0.4 406,220 + +1.1 406,220 + -0.1 406,221 - -0.9 406,221 - -0.2 406,221 - +0.1 406,221 - -0.8 406,221 - -2.2 406,221 - -1.7 406,221 - -1.3 406,221 - -0.1 406,221 - -0.3 406,221 - -0.3 406,221 - -1.8 406,221 - +0.1 406,221 - -1.5 406,221 - +0.4 406,221 - -1.2 406,221 - -1.5 406,221 - +0.0 406,465 + -1.9 406,465 + -1.8 406,465 + -0.1 406,465 + -0.9 406,466 - -0.3 406,466 - -1.1 406,466 - +0.3 406,466 - -1.8 406,466 - -1.3 406,466 - -1.4 406,466 - -0.1 406,466 - +0.1 406,466 - -1.9 406,586 + MPMX19_05690 0.13 -0.1 406,586 + MPMX19_05690 0.13 +0.0 406,586 + MPMX19_05690 0.13 +1.5 406,586 + MPMX19_05690 0.13 +0.5 406,586 + MPMX19_05690 0.13 +0.2 406,586 + MPMX19_05690 0.13 -1.1 406,586 + MPMX19_05690 0.13 +0.0 406,587 - MPMX19_05690 0.13 +0.4 406,587 - MPMX19_05690 0.13 -0.7 406,587 - MPMX19_05690 0.13 -0.6 406,587 - MPMX19_05690 0.13 -0.7 406,587 - MPMX19_05690 0.13 -0.5 406,587 - MPMX19_05690 0.13 -1.5 406,587 - MPMX19_05690 0.13 -2.4 406,587 - MPMX19_05690 0.13 -0.1 406,587 - MPMX19_05690 0.13 +0.9 406,587 - MPMX19_05690 0.13 -0.7 406,871 + MPMX19_05690 0.55 +0.2 406,871 + MPMX19_05690 0.55 +0.4 406,871 + MPMX19_05690 0.55 -0.3 406,871 + MPMX19_05690 0.55 -0.7 406,871 + MPMX19_05690 0.55 -0.4 406,871 + MPMX19_05690 0.55 +0.2 406,872 - MPMX19_05690 0.55 -0.1 406,872 - MPMX19_05690 0.55 +1.7 406,872 - MPMX19_05690 0.55 -1.7 406,931 + MPMX19_05690 0.64 +0.1 406,931 + MPMX19_05690 0.64 -2.4 406,931 + MPMX19_05690 0.64 -0.5 406,931 + MPMX19_05690 0.64 -0.8 406,931 + MPMX19_05690 0.64 +0.1 406,931 + MPMX19_05690 0.64 +0.7 406,931 + MPMX19_05690 0.64 -0.1 406,931 + MPMX19_05690 0.64 -0.8 406,932 - MPMX19_05690 0.64 -0.8 406,932 - MPMX19_05690 0.64 +0.2 406,932 - MPMX19_05690 0.64 +0.3 406,932 - MPMX19_05690 0.64 -0.1 406,932 - MPMX19_05690 0.64 +0.0 406,932 - MPMX19_05690 0.64 +1.1 406,932 - MPMX19_05690 0.64 +1.0 406,932 - MPMX19_05690 0.64 -0.9
Or see this region's nucleotide sequence