Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05428

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05427 and MPMX19_05428 are separated by 81 nucleotidesMPMX19_05428 and MPMX19_05429 are separated by 142 nucleotides MPMX19_05427: MPMX19_05427 - L-glyceraldehyde 3-phosphate reductase, at 118,326 to 119,381 _05427 MPMX19_05428: MPMX19_05428 - PCP degradation transcriptional activation protein, at 119,463 to 120,377 _05428 MPMX19_05429: MPMX19_05429 - Riboflavin transporter RibZ, at 120,520 to 121,953 _05429 Position (kb) 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 119.032 kb on + strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.056 kb on + strand, within MPMX19_05427at 119.057 kb on - strand, within MPMX19_05427at 119.077 kb on + strand, within MPMX19_05427at 119.077 kb on + strand, within MPMX19_05427at 119.113 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.332 kb on + strandat 119.333 kb on - strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.347 kb on + strandat 119.348 kb on - strandat 119.348 kb on - strandat 119.355 kb on - strandat 119.355 kb on - strandat 119.368 kb on + strandat 119.368 kb on + strandat 119.368 kb on + strandat 119.368 kb on + strandat 119.369 kb on - strandat 119.369 kb on - strandat 119.411 kb on - strandat 119.411 kb on - strandat 119.412 kb on + strandat 119.412 kb on + strandat 119.412 kb on + strandat 119.413 kb on - strandat 119.413 kb on - strandat 119.413 kb on - strandat 119.421 kb on - strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.461 kb on + strandat 119.462 kb on - strandat 119.462 kb on - strandat 119.462 kb on - strandat 119.462 kb on - strandat 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.389 kb on + strandat 120.389 kb on + strandat 120.389 kb on + strandat 120.440 kb on + strandat 120.441 kb on - strandat 120.441 kb on - strandat 120.483 kb on + strandat 120.483 kb on + strandat 120.721 kb on + strand, within MPMX19_05429at 120.721 kb on + strand, within MPMX19_05429at 120.721 kb on + strand, within MPMX19_05429at 120.722 kb on - strand, within MPMX19_05429at 120.722 kb on - strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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118,666 + MPMX19_05427 0.32 +0.3
118,666 + MPMX19_05427 0.32 +0.8
118,666 + MPMX19_05427 0.32 -2.4
118,666 + MPMX19_05427 0.32 +0.3
118,666 + MPMX19_05427 0.32 -0.3
118,666 + MPMX19_05427 0.32 -0.2
118,667 - MPMX19_05427 0.32 -0.4
118,667 - MPMX19_05427 0.32 -1.9
118,667 - MPMX19_05427 0.32 -0.5
118,667 - MPMX19_05427 0.32 -1.1
118,667 - MPMX19_05427 0.32 -0.1
118,667 - MPMX19_05427 0.32 -0.6
118,667 - MPMX19_05427 0.32 -0.1
118,667 - MPMX19_05427 0.32 -0.2
118,667 - MPMX19_05427 0.32 +0.0
118,667 - MPMX19_05427 0.32 -0.6
118,667 - MPMX19_05427 0.32 -1.3
118,667 - MPMX19_05427 0.32 -0.6
118,667 - MPMX19_05427 0.32 +0.0
118,667 - MPMX19_05427 0.32 -2.0
118,667 - MPMX19_05427 0.32 -0.7
118,789 + MPMX19_05427 0.44 -1.2
118,789 + MPMX19_05427 0.44 -0.1
118,789 + MPMX19_05427 0.44 -0.9
118,789 + MPMX19_05427 0.44 +0.1
118,789 + MPMX19_05427 0.44 -1.5
118,789 + MPMX19_05427 0.44 -0.3
118,790 - MPMX19_05427 0.44 -1.0
118,790 - MPMX19_05427 0.44 -0.3
118,790 - MPMX19_05427 0.44 -0.3
118,867 + MPMX19_05427 0.51 +0.4
118,867 + MPMX19_05427 0.51 -1.4
118,867 + MPMX19_05427 0.51 +0.7
118,868 - MPMX19_05427 0.51 -0.1
118,868 - MPMX19_05427 0.51 +0.1
118,868 - MPMX19_05427 0.51 -1.3
118,885 + MPMX19_05427 0.53 -0.8
118,885 + MPMX19_05427 0.53 -0.9
118,885 + MPMX19_05427 0.53 +0.4
118,885 + MPMX19_05427 0.53 -1.3
118,885 + MPMX19_05427 0.53 +0.7
118,885 + MPMX19_05427 0.53 -0.4
118,885 + MPMX19_05427 0.53 -1.6
118,885 + MPMX19_05427 0.53 -0.3
118,885 + MPMX19_05427 0.53 -0.9
118,885 + MPMX19_05427 0.53 +1.9
118,886 - MPMX19_05427 0.53 -0.2
118,886 - MPMX19_05427 0.53 -2.1
118,886 - MPMX19_05427 0.53 -0.6
118,886 - MPMX19_05427 0.53 -0.5
118,886 - MPMX19_05427 0.53 -0.9
118,886 - MPMX19_05427 0.53 -0.2
118,886 - MPMX19_05427 0.53 -0.2
118,886 - MPMX19_05427 0.53 -1.0
118,969 + MPMX19_05427 0.61 -1.6
118,969 + MPMX19_05427 0.61 -1.3
118,969 + MPMX19_05427 0.61 -1.6
118,969 + MPMX19_05427 0.61 -1.1
118,969 + MPMX19_05427 0.61 -0.7
118,969 + MPMX19_05427 0.61 -0.4
118,969 + MPMX19_05427 0.61 +0.3
118,970 - MPMX19_05427 0.61 -0.6
118,970 - MPMX19_05427 0.61 -1.5
118,970 - MPMX19_05427 0.61 -0.6
118,970 - MPMX19_05427 0.61 -1.1
118,970 - MPMX19_05427 0.61 -1.7
118,970 - MPMX19_05427 0.61 +1.3
118,984 + MPMX19_05427 0.62 -0.5
118,984 + MPMX19_05427 0.62 -2.1
118,984 + MPMX19_05427 0.62 -0.2
118,984 + MPMX19_05427 0.62 -0.4
118,984 + MPMX19_05427 0.62 +1.7
118,984 + MPMX19_05427 0.62 -0.3
118,985 - MPMX19_05427 0.62 -0.3
118,985 - MPMX19_05427 0.62 +0.3
118,985 - MPMX19_05427 0.62 -0.3
118,985 - MPMX19_05427 0.62 -0.4
119,032 + MPMX19_05427 0.67 -0.5
119,033 - MPMX19_05427 0.67 +0.5
119,033 - MPMX19_05427 0.67 -1.9
119,033 - MPMX19_05427 0.67 +0.7
119,033 - MPMX19_05427 0.67 -0.3
119,033 - MPMX19_05427 0.67 -0.1
119,033 - MPMX19_05427 0.67 -1.6
119,033 - MPMX19_05427 0.67 -0.0
119,056 + MPMX19_05427 0.69 +0.3
119,057 - MPMX19_05427 0.69 -0.1
119,077 + MPMX19_05427 0.71 -1.4
119,077 + MPMX19_05427 0.71 -0.5
119,113 + MPMX19_05427 0.75 +0.3
119,179 + MPMX19_05427 0.81 -2.4
119,179 + MPMX19_05427 0.81 +1.0
119,179 + MPMX19_05427 0.81 -1.4
119,179 + MPMX19_05427 0.81 -0.7
119,180 - MPMX19_05427 0.81 -1.4
119,180 - MPMX19_05427 0.81 -0.1
119,180 - MPMX19_05427 0.81 +0.2
119,180 - MPMX19_05427 0.81 -0.7
119,180 - MPMX19_05427 0.81 +0.6
119,180 - MPMX19_05427 0.81 +0.6
119,180 - MPMX19_05427 0.81 -0.9
119,180 - MPMX19_05427 0.81 -1.0
119,332 + +0.3
119,333 - -2.0
119,347 + -1.9
119,347 + -1.2
119,347 + -0.5
119,347 + -2.8
119,347 + -1.1
119,348 - -1.3
119,348 - +0.9
119,355 - -0.4
119,355 - -1.6
119,368 + -0.2
119,368 + -0.9
119,368 + -0.2
119,368 + -0.3
119,369 - -1.2
119,369 - -0.9
119,411 - -1.1
119,411 - -2.4
119,412 + -0.5
119,412 + +1.1
119,412 + +0.6
119,413 - +0.4
119,413 - -0.4
119,413 - -0.4
119,421 - -0.6
119,461 + -0.1
119,461 + -1.4
119,461 + -0.8
119,461 + +1.4
119,461 + -0.1
119,462 - -1.1
119,462 - +0.8
119,462 - -0.7
119,462 - -1.0
120,052 + MPMX19_05428 0.64 +0.5
120,052 + MPMX19_05428 0.64 +0.2
120,052 + MPMX19_05428 0.64 -1.3
120,052 + MPMX19_05428 0.64 -1.1
120,052 + MPMX19_05428 0.64 -0.4
120,052 + MPMX19_05428 0.64 -1.6
120,053 - MPMX19_05428 0.64 +0.5
120,053 - MPMX19_05428 0.64 -0.6
120,053 - MPMX19_05428 0.64 +0.4
120,053 - MPMX19_05428 0.64 -0.1
120,053 - MPMX19_05428 0.64 -1.7
120,053 - MPMX19_05428 0.64 -1.0
120,053 - MPMX19_05428 0.64 +0.1
120,053 - MPMX19_05428 0.64 -0.3
120,389 + -1.1
120,389 + -0.7
120,389 + -0.6
120,440 + -2.1
120,441 - -0.7
120,441 - -1.3
120,483 + +0.6
120,483 + -0.9
120,721 + MPMX19_05429 0.14 -1.3
120,721 + MPMX19_05429 0.14 -0.7
120,721 + MPMX19_05429 0.14 -1.7
120,722 - MPMX19_05429 0.14 -1.4
120,722 - MPMX19_05429 0.14 -0.0
121,210 + MPMX19_05429 0.48 +0.3
121,210 + MPMX19_05429 0.48 +0.1
121,210 + MPMX19_05429 0.48 -1.0
121,210 + MPMX19_05429 0.48 -0.9
121,210 + MPMX19_05429 0.48 -0.6
121,210 + MPMX19_05429 0.48 -0.4
121,211 - MPMX19_05429 0.48 +0.9
121,211 - MPMX19_05429 0.48 -0.6
121,211 - MPMX19_05429 0.48 +0.1
121,211 - MPMX19_05429 0.48 -1.0
121,211 - MPMX19_05429 0.48 -0.6
121,211 - MPMX19_05429 0.48 +0.7
121,211 - MPMX19_05429 0.48 +0.9

Or see this region's nucleotide sequence