Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05319 and MPMX19_05320 are separated by 191 nucleotides MPMX19_05320 and MPMX19_05321 are separated by 140 nucleotides
MPMX19_05319: MPMX19_05319 - Cystathionine gamma-synthase, at 858,293 to 859,438
_05319
MPMX19_05320: MPMX19_05320 - hypothetical protein, at 859,630 to 860,904
_05320
MPMX19_05321: MPMX19_05321 - Multicopper oxidase mco, at 861,045 to 862,529
_05321
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.670 kb on + strand, within MPMX19_05319 at 858.671 kb on - strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 859.001 kb on - strand, within MPMX19_05319 at 859.136 kb on + strand, within MPMX19_05319 at 859.137 kb on - strand, within MPMX19_05319 at 859.196 kb on + strand, within MPMX19_05319 at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.535 kb on + strand at 859.580 kb on + strand at 859.581 kb on - strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.619 kb on - strand at 859.619 kb on - strand at 859.619 kb on - strand at 859.712 kb on - strand at 859.712 kb on - strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.987 kb on + strand, within MPMX19_05320 at 859.987 kb on + strand, within MPMX19_05320 at 859.987 kb on + strand, within MPMX19_05320 at 859.988 kb on - strand, within MPMX19_05320 at 859.988 kb on - strand, within MPMX19_05320 at 860.011 kb on + strand, within MPMX19_05320 at 860.231 kb on - strand, within MPMX19_05320 at 860.281 kb on + strand, within MPMX19_05320 at 860.281 kb on + strand, within MPMX19_05320 at 860.282 kb on - strand, within MPMX19_05320 at 860.282 kb on - strand, within MPMX19_05320 at 860.282 kb on - strand, within MPMX19_05320 at 860.427 kb on - strand, within MPMX19_05320 at 860.427 kb on - strand, within MPMX19_05320 at 860.427 kb on - strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.530 kb on + strand, within MPMX19_05320 at 860.530 kb on + strand, within MPMX19_05320 at 860.530 kb on + strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.533 kb on + strand, within MPMX19_05320 at 860.533 kb on + strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.561 kb on - strand, within MPMX19_05320 at 860.561 kb on - strand, within MPMX19_05320 at 860.561 kb on - strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.732 kb on - strand, within MPMX19_05320 at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.432 kb on + strand, within MPMX19_05321 at 861.433 kb on - strand, within MPMX19_05321 at 861.474 kb on + strand, within MPMX19_05321 at 861.475 kb on - strand, within MPMX19_05321 at 861.475 kb on - strand, within MPMX19_05321 at 861.475 kb on - strand, within MPMX19_05321 at 861.777 kb on + strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 858,670 + MPMX19_05319 0.33 +0.9 858,671 - MPMX19_05319 0.33 -1.2 858,899 + MPMX19_05319 0.53 -1.1 858,899 + MPMX19_05319 0.53 -1.5 858,899 + MPMX19_05319 0.53 -0.4 858,899 + MPMX19_05319 0.53 -0.3 858,899 + MPMX19_05319 0.53 +0.1 858,899 + MPMX19_05319 0.53 -1.4 858,899 + MPMX19_05319 0.53 -1.8 858,899 + MPMX19_05319 0.53 -1.9 858,900 - MPMX19_05319 0.53 +0.3 858,900 - MPMX19_05319 0.53 +0.9 858,900 - MPMX19_05319 0.53 -0.8 858,900 - MPMX19_05319 0.53 -0.3 859,001 - MPMX19_05319 0.62 -1.1 859,136 + MPMX19_05319 0.74 -0.0 859,137 - MPMX19_05319 0.74 +0.1 859,196 + MPMX19_05319 0.79 +0.1 859,403 + -0.3 859,403 + -0.6 859,403 + -0.2 859,403 + -0.7 859,404 - +1.0 859,404 - +0.7 859,404 - +0.4 859,404 - -0.6 859,404 - -1.8 859,404 - -0.4 859,483 + -0.6 859,483 + -0.2 859,483 + +0.8 859,483 + -0.4 859,483 + -1.2 859,483 + +1.0 859,484 - -0.4 859,484 - -0.3 859,484 - +1.2 859,484 - -1.0 859,484 - +1.6 859,484 - -0.2 859,484 - -1.2 859,484 - +0.7 859,535 + -0.9 859,580 + -0.1 859,581 - -0.3 859,618 + +0.9 859,618 + +0.2 859,618 + +0.2 859,618 + -0.4 859,618 + +0.2 859,618 + +0.6 859,618 + -0.2 859,619 - -0.8 859,619 - -0.4 859,619 - +1.1 859,712 - -1.6 859,712 - +0.6 859,732 + +0.6 859,732 + +0.4 859,732 + +0.6 859,732 + +0.4 859,732 + +2.6 859,732 + +0.3 859,732 + +0.2 859,732 + -0.0 859,732 + +0.4 859,732 + +1.2 859,732 + -0.8 859,733 - -0.2 859,733 - -1.0 859,733 - -0.9 859,733 - -0.8 859,733 - -0.8 859,733 - -0.2 859,733 - -0.4 859,733 - +0.4 859,733 - -0.4 859,733 - +0.9 859,733 - +0.2 859,757 - -2.3 859,757 - -0.0 859,757 - -0.6 859,757 - +0.5 859,876 + MPMX19_05320 0.19 +0.5 859,876 + MPMX19_05320 0.19 -0.0 859,876 + MPMX19_05320 0.19 -0.4 859,876 + MPMX19_05320 0.19 +1.0 859,876 + MPMX19_05320 0.19 -1.7 859,876 + MPMX19_05320 0.19 -1.8 859,876 + MPMX19_05320 0.19 -1.4 859,876 + MPMX19_05320 0.19 +0.3 859,876 + MPMX19_05320 0.19 -1.3 859,877 - MPMX19_05320 0.19 -1.6 859,877 - MPMX19_05320 0.19 -0.8 859,877 - MPMX19_05320 0.19 -0.0 859,877 - MPMX19_05320 0.19 -0.8 859,877 - MPMX19_05320 0.19 -0.4 859,972 + MPMX19_05320 0.27 -2.2 859,972 + MPMX19_05320 0.27 +0.3 859,972 + MPMX19_05320 0.27 -0.4 859,972 + MPMX19_05320 0.27 -2.2 859,972 + MPMX19_05320 0.27 -0.8 859,972 + MPMX19_05320 0.27 -0.3 859,972 + MPMX19_05320 0.27 +0.3 859,973 - MPMX19_05320 0.27 +0.4 859,973 - MPMX19_05320 0.27 -0.7 859,973 - MPMX19_05320 0.27 -0.3 859,973 - MPMX19_05320 0.27 -0.8 859,973 - MPMX19_05320 0.27 +0.4 859,973 - MPMX19_05320 0.27 +0.5 859,987 + MPMX19_05320 0.28 +1.6 859,987 + MPMX19_05320 0.28 -0.4 859,987 + MPMX19_05320 0.28 -0.5 859,988 - MPMX19_05320 0.28 +0.2 859,988 - MPMX19_05320 0.28 +0.3 860,011 + MPMX19_05320 0.30 -1.4 860,231 - MPMX19_05320 0.47 -1.2 860,281 + MPMX19_05320 0.51 +0.7 860,281 + MPMX19_05320 0.51 -1.8 860,282 - MPMX19_05320 0.51 +0.6 860,282 - MPMX19_05320 0.51 +0.8 860,282 - MPMX19_05320 0.51 +0.3 860,427 - MPMX19_05320 0.63 +0.0 860,427 - MPMX19_05320 0.63 +0.9 860,427 - MPMX19_05320 0.63 +0.3 860,431 + MPMX19_05320 0.63 -0.4 860,431 + MPMX19_05320 0.63 +1.9 860,431 + MPMX19_05320 0.63 +0.8 860,431 + MPMX19_05320 0.63 -0.3 860,431 + MPMX19_05320 0.63 +1.1 860,431 + MPMX19_05320 0.63 +0.4 860,431 + MPMX19_05320 0.63 +0.2 860,431 + MPMX19_05320 0.63 -1.2 860,432 - MPMX19_05320 0.63 -1.8 860,432 - MPMX19_05320 0.63 +0.6 860,432 - MPMX19_05320 0.63 -1.0 860,432 - MPMX19_05320 0.63 +1.6 860,432 - MPMX19_05320 0.63 +0.7 860,432 - MPMX19_05320 0.63 -1.4 860,432 - MPMX19_05320 0.63 +0.6 860,432 - MPMX19_05320 0.63 +0.6 860,530 + MPMX19_05320 0.71 +0.9 860,530 + MPMX19_05320 0.71 -0.0 860,530 + MPMX19_05320 0.71 -0.4 860,531 - MPMX19_05320 0.71 +1.0 860,531 - MPMX19_05320 0.71 -0.4 860,531 - MPMX19_05320 0.71 -0.5 860,531 - MPMX19_05320 0.71 +2.1 860,531 - MPMX19_05320 0.71 -1.5 860,531 - MPMX19_05320 0.71 -0.4 860,531 - MPMX19_05320 0.71 -1.8 860,533 + MPMX19_05320 0.71 -0.9 860,533 + MPMX19_05320 0.71 +1.1 860,534 - MPMX19_05320 0.71 -0.1 860,534 - MPMX19_05320 0.71 -0.2 860,534 - MPMX19_05320 0.71 -1.8 860,534 - MPMX19_05320 0.71 +0.4 860,560 + MPMX19_05320 0.73 +0.3 860,560 + MPMX19_05320 0.73 +0.4 860,560 + MPMX19_05320 0.73 -0.0 860,560 + MPMX19_05320 0.73 +0.2 860,561 - MPMX19_05320 0.73 +0.1 860,561 - MPMX19_05320 0.73 -0.0 860,561 - MPMX19_05320 0.73 +0.4 860,572 + MPMX19_05320 0.74 -1.7 860,572 + MPMX19_05320 0.74 +0.1 860,572 + MPMX19_05320 0.74 -1.1 860,572 + MPMX19_05320 0.74 -1.4 860,572 + MPMX19_05320 0.74 -0.8 860,573 - MPMX19_05320 0.74 -1.8 860,573 - MPMX19_05320 0.74 +0.1 860,573 - MPMX19_05320 0.74 -1.0 860,573 - MPMX19_05320 0.74 -1.0 860,573 - MPMX19_05320 0.74 -0.9 860,731 + MPMX19_05320 0.86 -0.4 860,731 + MPMX19_05320 0.86 +0.6 860,731 + MPMX19_05320 0.86 -0.1 860,731 + MPMX19_05320 0.86 -0.9 860,731 + MPMX19_05320 0.86 -1.2 860,732 - MPMX19_05320 0.86 -0.1 860,902 + -0.6 860,902 + +0.8 860,902 + -1.6 860,902 + +0.5 860,902 + -1.8 860,902 + -0.0 860,902 + +1.6 860,902 + -1.4 860,902 + -0.2 860,902 + -1.4 860,902 + +0.5 860,902 + -0.2 860,902 + +0.8 860,902 + +0.4 860,902 + -0.0 860,902 + -0.6 860,902 + -0.4 860,902 + -0.6 860,903 - -0.4 860,903 - -1.4 860,903 - -1.0 860,903 - +0.8 860,903 - -0.0 860,903 - +0.8 860,903 - -1.0 860,903 - -0.4 860,903 - +1.0 860,903 - -1.7 860,903 - -0.2 860,903 - -0.4 860,903 - -0.2 860,903 - +0.2 860,903 - -2.0 860,903 - -0.4 861,291 + MPMX19_05321 0.17 -0.3 861,291 + MPMX19_05321 0.17 -0.2 861,291 + MPMX19_05321 0.17 -0.2 861,291 + MPMX19_05321 0.17 -1.4 861,291 + MPMX19_05321 0.17 -0.4 861,291 + MPMX19_05321 0.17 +0.6 861,291 + MPMX19_05321 0.17 -1.2 861,292 - MPMX19_05321 0.17 +0.7 861,292 - MPMX19_05321 0.17 +0.2 861,292 - MPMX19_05321 0.17 -0.6 861,292 - MPMX19_05321 0.17 -1.1 861,292 - MPMX19_05321 0.17 -1.2 861,292 - MPMX19_05321 0.17 -0.1 861,292 - MPMX19_05321 0.17 -0.4 861,292 - MPMX19_05321 0.17 -1.0 861,292 - MPMX19_05321 0.17 -0.2 861,292 - MPMX19_05321 0.17 -0.3 861,432 + MPMX19_05321 0.26 -0.3 861,433 - MPMX19_05321 0.26 -0.1 861,474 + MPMX19_05321 0.29 +0.6 861,475 - MPMX19_05321 0.29 +0.1 861,475 - MPMX19_05321 0.29 +0.4 861,475 - MPMX19_05321 0.29 +0.4 861,777 + MPMX19_05321 0.49 -1.3 861,778 - MPMX19_05321 0.49 -1.5 861,778 - MPMX19_05321 0.49 +0.2 861,778 - MPMX19_05321 0.49 -1.6 861,778 - MPMX19_05321 0.49 -0.0 861,778 - MPMX19_05321 0.49 +0.4
Or see this region's nucleotide sequence