Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05088

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05087 and MPMX19_05088 are separated by 454 nucleotidesMPMX19_05088 and MPMX19_05089 are separated by 0 nucleotides MPMX19_05087: MPMX19_05087 - hypothetical protein, at 575,783 to 576,679 _05087 MPMX19_05088: MPMX19_05088 - Enterobactin exporter EntS, at 577,134 to 578,369 _05088 MPMX19_05089: MPMX19_05089 - Acetyl-CoA acetyltransferase, at 578,370 to 579,539 _05089 Position (kb) 577 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.192 kb on + strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.193 kb on - strand, within MPMX19_05087at 576.220 kb on + strand, within MPMX19_05087at 576.220 kb on + strand, within MPMX19_05087at 576.220 kb on + strand, within MPMX19_05087at 576.220 kb on + strand, within MPMX19_05087at 576.221 kb on - strand, within MPMX19_05087at 576.228 kb on + strand, within MPMX19_05087at 576.228 kb on + strand, within MPMX19_05087at 576.228 kb on + strand, within MPMX19_05087at 576.229 kb on - strand, within MPMX19_05087at 576.229 kb on - strand, within MPMX19_05087at 576.229 kb on - strand, within MPMX19_05087at 576.272 kb on - strand, within MPMX19_05087at 576.312 kb on + strand, within MPMX19_05087at 576.313 kb on - strand, within MPMX19_05087at 576.313 kb on - strand, within MPMX19_05087at 576.313 kb on - strand, within MPMX19_05087at 576.373 kb on + strand, within MPMX19_05087at 576.373 kb on + strand, within MPMX19_05087at 576.375 kb on + strand, within MPMX19_05087at 576.375 kb on + strand, within MPMX19_05087at 576.375 kb on + strand, within MPMX19_05087at 576.375 kb on + strand, within MPMX19_05087at 576.376 kb on - strand, within MPMX19_05087at 576.376 kb on - strand, within MPMX19_05087at 576.376 kb on - strand, within MPMX19_05087at 576.376 kb on - strand, within MPMX19_05087at 576.452 kb on - strand, within MPMX19_05087at 576.452 kb on - strand, within MPMX19_05087at 576.465 kb on + strand, within MPMX19_05087at 576.478 kb on + strand, within MPMX19_05087at 576.480 kb on + strand, within MPMX19_05087at 576.481 kb on - strand, within MPMX19_05087at 576.481 kb on - strand, within MPMX19_05087at 576.481 kb on - strand, within MPMX19_05087at 576.481 kb on - strand, within MPMX19_05087at 576.486 kb on + strand, within MPMX19_05087at 576.486 kb on + strand, within MPMX19_05087at 576.486 kb on + strand, within MPMX19_05087at 576.486 kb on + strand, within MPMX19_05087at 576.487 kb on - strand, within MPMX19_05087at 576.487 kb on - strand, within MPMX19_05087at 576.487 kb on - strand, within MPMX19_05087at 576.487 kb on - strand, within MPMX19_05087at 576.491 kb on + strand, within MPMX19_05087at 576.505 kb on + strand, within MPMX19_05087at 576.506 kb on - strand, within MPMX19_05087at 576.506 kb on - strand, within MPMX19_05087at 576.506 kb on - strand, within MPMX19_05087at 576.506 kb on - strand, within MPMX19_05087at 576.506 kb on - strand, within MPMX19_05087at 576.508 kb on + strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.509 kb on - strand, within MPMX19_05087at 576.539 kb on - strand, within MPMX19_05087at 576.539 kb on - strand, within MPMX19_05087at 576.539 kb on - strand, within MPMX19_05087at 576.539 kb on - strand, within MPMX19_05087at 576.671 kb on - strandat 576.688 kb on + strandat 576.805 kb on + strandat 576.806 kb on - strandat 576.811 kb on - strandat 576.829 kb on + strandat 576.881 kb on - strandat 576.896 kb on + strandat 576.904 kb on - strandat 576.911 kb on - strandat 576.990 kb on - strandat 576.993 kb on + strandat 576.994 kb on - strandat 577.006 kb on + strandat 577.006 kb on + strandat 577.006 kb on + strandat 577.006 kb on + strandat 577.007 kb on - strandat 577.007 kb on - strandat 577.007 kb on - strandat 577.007 kb on - strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.024 kb on + strandat 577.025 kb on - strandat 577.025 kb on - strandat 577.067 kb on - strandat 577.067 kb on - strandat 577.080 kb on + strandat 577.080 kb on + strandat 577.081 kb on - strandat 577.089 kb on + strandat 577.151 kb on + strandat 577.151 kb on + strandat 577.152 kb on - strandat 577.152 kb on - strandat 577.458 kb on + strand, within MPMX19_05088at 577.458 kb on + strand, within MPMX19_05088at 577.458 kb on + strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.342 kb on + strandat 578.342 kb on + strandat 578.512 kb on + strand, within MPMX19_05089at 578.897 kb on + strand, within MPMX19_05089at 578.897 kb on + strand, within MPMX19_05089at 579.038 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.130 kb on + strand, within MPMX19_05089at 579.130 kb on + strand, within MPMX19_05089at 579.131 kb on - strand, within MPMX19_05089

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
576,192 + MPMX19_05087 0.46 -1.2
576,192 + MPMX19_05087 0.46 -0.6
576,192 + MPMX19_05087 0.46 -0.3
576,192 + MPMX19_05087 0.46 -1.6
576,192 + MPMX19_05087 0.46 +0.0
576,192 + MPMX19_05087 0.46 -0.4
576,192 + MPMX19_05087 0.46 +0.0
576,192 + MPMX19_05087 0.46 +0.1
576,192 + MPMX19_05087 0.46 -0.7
576,192 + MPMX19_05087 0.46 -0.7
576,192 + MPMX19_05087 0.46 -2.8
576,193 - MPMX19_05087 0.46 +0.6
576,193 - MPMX19_05087 0.46 -0.3
576,193 - MPMX19_05087 0.46 -1.0
576,193 - MPMX19_05087 0.46 -2.2
576,193 - MPMX19_05087 0.46 +0.6
576,193 - MPMX19_05087 0.46 -0.9
576,193 - MPMX19_05087 0.46 +0.6
576,193 - MPMX19_05087 0.46 -0.5
576,193 - MPMX19_05087 0.46 -2.1
576,193 - MPMX19_05087 0.46 +0.0
576,193 - MPMX19_05087 0.46 -0.3
576,193 - MPMX19_05087 0.46 -0.7
576,193 - MPMX19_05087 0.46 -0.9
576,193 - MPMX19_05087 0.46 -0.7
576,193 - MPMX19_05087 0.46 -0.7
576,193 - MPMX19_05087 0.46 -0.4
576,220 + MPMX19_05087 0.49 -0.4
576,220 + MPMX19_05087 0.49 -0.4
576,220 + MPMX19_05087 0.49 -0.3
576,220 + MPMX19_05087 0.49 -2.5
576,221 - MPMX19_05087 0.49 +0.2
576,228 + MPMX19_05087 0.50 +0.6
576,228 + MPMX19_05087 0.50 +1.2
576,228 + MPMX19_05087 0.50 +1.6
576,229 - MPMX19_05087 0.50 +0.2
576,229 - MPMX19_05087 0.50 +0.0
576,229 - MPMX19_05087 0.50 -1.1
576,272 - MPMX19_05087 0.55 +0.6
576,312 + MPMX19_05087 0.59 +0.3
576,313 - MPMX19_05087 0.59 -1.3
576,313 - MPMX19_05087 0.59 +0.6
576,313 - MPMX19_05087 0.59 -1.4
576,373 + MPMX19_05087 0.66 -1.4
576,373 + MPMX19_05087 0.66 +0.3
576,375 + MPMX19_05087 0.66 -0.9
576,375 + MPMX19_05087 0.66 -0.8
576,375 + MPMX19_05087 0.66 +0.5
576,375 + MPMX19_05087 0.66 -1.0
576,376 - MPMX19_05087 0.66 -1.7
576,376 - MPMX19_05087 0.66 -0.1
576,376 - MPMX19_05087 0.66 -2.2
576,376 - MPMX19_05087 0.66 +0.3
576,452 - MPMX19_05087 0.75 -1.0
576,452 - MPMX19_05087 0.75 +0.0
576,465 + MPMX19_05087 0.76 +0.8
576,478 + MPMX19_05087 0.77 +0.6
576,480 + MPMX19_05087 0.78 +0.3
576,481 - MPMX19_05087 0.78 -1.6
576,481 - MPMX19_05087 0.78 -0.7
576,481 - MPMX19_05087 0.78 -0.6
576,481 - MPMX19_05087 0.78 -2.2
576,486 + MPMX19_05087 0.78 -0.2
576,486 + MPMX19_05087 0.78 +0.2
576,486 + MPMX19_05087 0.78 -1.6
576,486 + MPMX19_05087 0.78 -0.3
576,487 - MPMX19_05087 0.78 -0.6
576,487 - MPMX19_05087 0.78 -2.0
576,487 - MPMX19_05087 0.78 +0.7
576,487 - MPMX19_05087 0.78 -1.2
576,491 + MPMX19_05087 0.79 -0.1
576,505 + MPMX19_05087 0.80 +0.0
576,506 - MPMX19_05087 0.81 -0.2
576,506 - MPMX19_05087 0.81 -0.3
576,506 - MPMX19_05087 0.81 +0.5
576,506 - MPMX19_05087 0.81 -0.5
576,506 - MPMX19_05087 0.81 -1.2
576,508 + MPMX19_05087 0.81 +0.0
576,509 - MPMX19_05087 0.81 +1.6
576,509 - MPMX19_05087 0.81 +0.4
576,509 - MPMX19_05087 0.81 -1.3
576,509 - MPMX19_05087 0.81 -0.9
576,509 - MPMX19_05087 0.81 +0.1
576,509 - MPMX19_05087 0.81 +0.4
576,509 - MPMX19_05087 0.81 -2.7
576,509 - MPMX19_05087 0.81 -1.0
576,539 - MPMX19_05087 0.84 +0.4
576,539 - MPMX19_05087 0.84 +0.8
576,539 - MPMX19_05087 0.84 +0.7
576,539 - MPMX19_05087 0.84 -1.2
576,671 - +1.2
576,688 + -0.8
576,805 + -0.2
576,806 - +0.4
576,811 - +0.6
576,829 + -1.4
576,881 - -0.4
576,896 + +1.3
576,904 - -0.3
576,911 - -0.9
576,990 - -0.7
576,993 + +0.9
576,994 - -0.4
577,006 + -1.1
577,006 + -0.8
577,006 + -0.6
577,006 + -0.7
577,007 - -2.1
577,007 - -0.1
577,007 - +0.9
577,007 - +0.5
577,008 + -0.5
577,008 + +0.3
577,008 + +0.0
577,009 - +1.2
577,009 - -0.9
577,024 + +0.2
577,025 - +0.6
577,025 - -1.2
577,067 - +0.1
577,067 - +0.2
577,080 + -0.1
577,080 + -0.1
577,081 - +1.1
577,089 + +0.3
577,151 + -0.5
577,151 + -0.4
577,152 - -2.3
577,152 - -1.2
577,458 + MPMX19_05088 0.26 +0.7
577,458 + MPMX19_05088 0.26 -1.4
577,458 + MPMX19_05088 0.26 +1.3
577,459 - MPMX19_05088 0.26 -0.3
577,459 - MPMX19_05088 0.26 +0.3
577,459 - MPMX19_05088 0.26 -1.9
577,459 - MPMX19_05088 0.26 +0.3
577,459 - MPMX19_05088 0.26 -0.5
577,459 - MPMX19_05088 0.26 +1.4
577,459 - MPMX19_05088 0.26 -0.4
577,624 + MPMX19_05088 0.40 -1.0
577,624 + MPMX19_05088 0.40 -0.5
577,624 + MPMX19_05088 0.40 -0.6
577,624 + MPMX19_05088 0.40 -2.0
577,624 + MPMX19_05088 0.40 +1.8
577,624 + MPMX19_05088 0.40 -0.3
577,624 + MPMX19_05088 0.40 -0.4
577,625 - MPMX19_05088 0.40 +0.5
577,625 - MPMX19_05088 0.40 -0.4
577,625 - MPMX19_05088 0.40 -1.5
577,625 - MPMX19_05088 0.40 +0.0
577,834 + MPMX19_05088 0.57 +0.0
577,834 + MPMX19_05088 0.57 -0.1
577,834 + MPMX19_05088 0.57 -0.2
577,834 + MPMX19_05088 0.57 -1.3
577,835 - MPMX19_05088 0.57 -0.7
577,835 - MPMX19_05088 0.57 -1.3
577,835 - MPMX19_05088 0.57 +1.4
577,835 - MPMX19_05088 0.57 +0.9
577,835 - MPMX19_05088 0.57 -0.7
577,858 + MPMX19_05088 0.59 +1.0
577,858 + MPMX19_05088 0.59 -0.8
577,858 + MPMX19_05088 0.59 +0.4
577,858 + MPMX19_05088 0.59 -0.1
577,858 + MPMX19_05088 0.59 -0.2
577,858 + MPMX19_05088 0.59 +0.6
577,858 + MPMX19_05088 0.59 -0.1
577,858 + MPMX19_05088 0.59 -0.2
577,858 + MPMX19_05088 0.59 -0.7
577,858 + MPMX19_05088 0.59 +1.1
577,858 + MPMX19_05088 0.59 +0.1
577,858 + MPMX19_05088 0.59 -0.4
577,859 - MPMX19_05088 0.59 -1.7
577,859 - MPMX19_05088 0.59 +0.3
577,859 - MPMX19_05088 0.59 -0.6
577,859 - MPMX19_05088 0.59 +2.1
577,859 - MPMX19_05088 0.59 -0.5
577,859 - MPMX19_05088 0.59 +0.2
577,859 - MPMX19_05088 0.59 +0.3
577,859 - MPMX19_05088 0.59 +0.3
577,859 - MPMX19_05088 0.59 -1.7
577,859 - MPMX19_05088 0.59 -0.9
577,859 - MPMX19_05088 0.59 +1.1
577,859 - MPMX19_05088 0.59 +0.0
577,859 - MPMX19_05088 0.59 -2.6
578,233 + MPMX19_05088 0.89 -0.9
578,233 + MPMX19_05088 0.89 +0.1
578,233 + MPMX19_05088 0.89 -1.1
578,233 + MPMX19_05088 0.89 -0.3
578,233 + MPMX19_05088 0.89 -0.9
578,233 + MPMX19_05088 0.89 -1.0
578,233 + MPMX19_05088 0.89 -1.0
578,233 + MPMX19_05088 0.89 -0.9
578,233 + MPMX19_05088 0.89 +0.2
578,234 - MPMX19_05088 0.89 -0.6
578,234 - MPMX19_05088 0.89 -0.5
578,234 - MPMX19_05088 0.89 -0.5
578,234 - MPMX19_05088 0.89 +0.1
578,234 - MPMX19_05088 0.89 -2.1
578,234 - MPMX19_05088 0.89 +0.6
578,234 - MPMX19_05088 0.89 +0.6
578,234 - MPMX19_05088 0.89 -0.7
578,234 - MPMX19_05088 0.89 +0.2
578,234 - MPMX19_05088 0.89 -0.4
578,234 - MPMX19_05088 0.89 -0.4
578,234 - MPMX19_05088 0.89 -1.2
578,234 - MPMX19_05088 0.89 -0.6
578,234 - MPMX19_05088 0.89 -0.7
578,234 - MPMX19_05088 0.89 +1.2
578,234 - MPMX19_05088 0.89 +0.0
578,234 - MPMX19_05088 0.89 -2.0
578,342 + +0.8
578,342 + -1.7
578,512 + MPMX19_05089 0.12 +0.6
578,897 + MPMX19_05089 0.45 -0.1
578,897 + MPMX19_05089 0.45 +1.1
579,038 + MPMX19_05089 0.57 +1.7
579,052 + MPMX19_05089 0.58 +0.4
579,052 + MPMX19_05089 0.58 -0.1
579,052 + MPMX19_05089 0.58 +0.3
579,052 + MPMX19_05089 0.58 -0.9
579,052 + MPMX19_05089 0.58 +0.6
579,053 - MPMX19_05089 0.58 -1.0
579,053 - MPMX19_05089 0.58 -1.6
579,053 - MPMX19_05089 0.58 -0.0
579,053 - MPMX19_05089 0.58 -0.2
579,130 + MPMX19_05089 0.65 -0.4
579,130 + MPMX19_05089 0.65 -0.8
579,131 - MPMX19_05089 0.65 -0.7

Or see this region's nucleotide sequence