Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04514

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04513 and MPMX19_04514 overlap by 4 nucleotidesMPMX19_04514 and MPMX19_04515 are separated by 100 nucleotidesMPMX19_04515 and MPMX19_04516 overlap by 4 nucleotides MPMX19_04513: MPMX19_04513 - Adaptive-response sensory-kinase SasA, at 883,773 to 886,277 _04513 MPMX19_04514: MPMX19_04514 - hypothetical protein, at 886,274 to 887,701 _04514 MPMX19_04515: MPMX19_04515 - hypothetical protein, at 887,802 to 888,302 _04515 MPMX19_04516: MPMX19_04516 - Long-chain-fatty-acid--CoA ligase, at 888,299 to 889,819 _04516 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 886.120 kb on + strandat 886.120 kb on + strandat 886.120 kb on + strandat 886.120 kb on + strandat 886.121 kb on - strandat 886.121 kb on - strandat 886.121 kb on - strandat 886.644 kb on + strand, within MPMX19_04514at 886.644 kb on + strand, within MPMX19_04514at 886.644 kb on + strand, within MPMX19_04514at 886.645 kb on - strand, within MPMX19_04514at 886.737 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.049 kb on + strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.050 kb on - strand, within MPMX19_04514at 887.200 kb on - strand, within MPMX19_04514at 887.259 kb on + strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.260 kb on - strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.307 kb on + strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.308 kb on - strand, within MPMX19_04514at 887.500 kb on + strand, within MPMX19_04514at 887.500 kb on + strand, within MPMX19_04514at 887.500 kb on + strand, within MPMX19_04514at 887.501 kb on - strand, within MPMX19_04514at 887.501 kb on - strand, within MPMX19_04514at 887.526 kb on + strand, within MPMX19_04514at 887.526 kb on + strand, within MPMX19_04514at 887.527 kb on - strand, within MPMX19_04514at 887.527 kb on - strand, within MPMX19_04514at 887.527 kb on - strand, within MPMX19_04514at 887.559 kb on + strandat 887.559 kb on + strandat 887.559 kb on + strandat 887.560 kb on - strandat 887.560 kb on - strandat 887.560 kb on - strandat 887.754 kb on + strandat 887.755 kb on - strandat 888.079 kb on + strand, within MPMX19_04515at 888.079 kb on + strand, within MPMX19_04515at 888.079 kb on + strand, within MPMX19_04515at 888.080 kb on - strand, within MPMX19_04515at 888.080 kb on - strand, within MPMX19_04515at 888.080 kb on - strand, within MPMX19_04515at 888.080 kb on - strand, within MPMX19_04515at 888.130 kb on + strand, within MPMX19_04515at 888.130 kb on + strand, within MPMX19_04515at 888.130 kb on + strand, within MPMX19_04515at 888.130 kb on + strand, within MPMX19_04515at 888.130 kb on + strand, within MPMX19_04515at 888.131 kb on - strand, within MPMX19_04515at 888.131 kb on - strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.166 kb on + strand, within MPMX19_04515at 888.167 kb on - strand, within MPMX19_04515at 888.167 kb on - strand, within MPMX19_04515at 888.167 kb on - strand, within MPMX19_04515at 888.167 kb on - strand, within MPMX19_04515at 888.167 kb on - strand, within MPMX19_04515at 888.167 kb on - strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.193 kb on + strand, within MPMX19_04515at 888.194 kb on - strand, within MPMX19_04515at 888.194 kb on - strand, within MPMX19_04515at 888.217 kb on + strand, within MPMX19_04515at 888.217 kb on + strand, within MPMX19_04515at 888.218 kb on - strand, within MPMX19_04515at 888.218 kb on - strand, within MPMX19_04515at 888.218 kb on - strand, within MPMX19_04515at 888.405 kb on + strandat 888.405 kb on + strandat 888.406 kb on - strandat 888.582 kb on + strand, within MPMX19_04516at 888.583 kb on - strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.639 kb on + strand, within MPMX19_04516at 888.640 kb on - strand, within MPMX19_04516at 888.640 kb on - strand, within MPMX19_04516at 888.640 kb on - strand, within MPMX19_04516at 888.640 kb on - strand, within MPMX19_04516at 888.640 kb on - strand, within MPMX19_04516

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
886,120 + +0.3
886,120 + +1.0
886,120 + -1.1
886,120 + -1.1
886,121 - +0.3
886,121 - +1.6
886,121 - +0.7
886,644 + MPMX19_04514 0.26 +0.3
886,644 + MPMX19_04514 0.26 +0.4
886,644 + MPMX19_04514 0.26 -0.1
886,645 - MPMX19_04514 0.26 +0.7
886,737 + MPMX19_04514 0.32 +0.7
887,049 + MPMX19_04514 0.54 -1.1
887,049 + MPMX19_04514 0.54 +0.8
887,049 + MPMX19_04514 0.54 +0.6
887,049 + MPMX19_04514 0.54 -0.6
887,049 + MPMX19_04514 0.54 -1.4
887,049 + MPMX19_04514 0.54 -2.3
887,050 - MPMX19_04514 0.54 -0.7
887,050 - MPMX19_04514 0.54 -1.1
887,050 - MPMX19_04514 0.54 +1.7
887,050 - MPMX19_04514 0.54 +1.3
887,050 - MPMX19_04514 0.54 +0.2
887,050 - MPMX19_04514 0.54 +0.0
887,050 - MPMX19_04514 0.54 -0.5
887,050 - MPMX19_04514 0.54 -1.3
887,050 - MPMX19_04514 0.54 +0.0
887,050 - MPMX19_04514 0.54 +2.2
887,050 - MPMX19_04514 0.54 -0.8
887,200 - MPMX19_04514 0.65 -0.1
887,259 + MPMX19_04514 0.69 +0.2
887,260 - MPMX19_04514 0.69 -1.0
887,260 - MPMX19_04514 0.69 -0.8
887,260 - MPMX19_04514 0.69 +1.0
887,260 - MPMX19_04514 0.69 -0.5
887,307 + MPMX19_04514 0.72 -0.7
887,307 + MPMX19_04514 0.72 +0.2
887,307 + MPMX19_04514 0.72 +0.3
887,307 + MPMX19_04514 0.72 -0.6
887,307 + MPMX19_04514 0.72 -0.5
887,307 + MPMX19_04514 0.72 +0.9
887,307 + MPMX19_04514 0.72 -1.7
887,307 + MPMX19_04514 0.72 -0.1
887,308 - MPMX19_04514 0.72 -1.1
887,308 - MPMX19_04514 0.72 +1.7
887,308 - MPMX19_04514 0.72 +1.3
887,308 - MPMX19_04514 0.72 -0.1
887,308 - MPMX19_04514 0.72 -0.8
887,308 - MPMX19_04514 0.72 +0.4
887,308 - MPMX19_04514 0.72 +0.2
887,308 - MPMX19_04514 0.72 +0.0
887,500 + MPMX19_04514 0.86 +0.2
887,500 + MPMX19_04514 0.86 -0.4
887,500 + MPMX19_04514 0.86 +0.7
887,501 - MPMX19_04514 0.86 -0.4
887,501 - MPMX19_04514 0.86 -0.6
887,526 + MPMX19_04514 0.88 +1.7
887,526 + MPMX19_04514 0.88 -0.1
887,527 - MPMX19_04514 0.88 -0.3
887,527 - MPMX19_04514 0.88 -1.6
887,527 - MPMX19_04514 0.88 -2.3
887,559 + +0.3
887,559 + -0.1
887,559 + -0.8
887,560 - +1.4
887,560 - +0.9
887,560 - -1.4
887,754 + -0.7
887,755 - +0.4
888,079 + MPMX19_04515 0.55 +0.6
888,079 + MPMX19_04515 0.55 -2.1
888,079 + MPMX19_04515 0.55 +0.2
888,080 - MPMX19_04515 0.55 -0.1
888,080 - MPMX19_04515 0.55 +0.5
888,080 - MPMX19_04515 0.55 -0.4
888,080 - MPMX19_04515 0.55 -0.3
888,130 + MPMX19_04515 0.65 +0.2
888,130 + MPMX19_04515 0.65 +0.0
888,130 + MPMX19_04515 0.65 +1.1
888,130 + MPMX19_04515 0.65 -0.3
888,130 + MPMX19_04515 0.65 -0.4
888,131 - MPMX19_04515 0.66 +0.1
888,131 - MPMX19_04515 0.66 +2.3
888,166 + MPMX19_04515 0.73 +0.2
888,166 + MPMX19_04515 0.73 +1.2
888,166 + MPMX19_04515 0.73 +0.2
888,166 + MPMX19_04515 0.73 +0.3
888,166 + MPMX19_04515 0.73 -0.4
888,166 + MPMX19_04515 0.73 +0.3
888,166 + MPMX19_04515 0.73 -0.6
888,167 - MPMX19_04515 0.73 -0.8
888,167 - MPMX19_04515 0.73 +0.0
888,167 - MPMX19_04515 0.73 -0.2
888,167 - MPMX19_04515 0.73 -0.3
888,167 - MPMX19_04515 0.73 +0.9
888,167 - MPMX19_04515 0.73 -0.3
888,193 + MPMX19_04515 0.78 -1.8
888,193 + MPMX19_04515 0.78 +0.0
888,193 + MPMX19_04515 0.78 -1.6
888,193 + MPMX19_04515 0.78 -0.8
888,193 + MPMX19_04515 0.78 -2.0
888,193 + MPMX19_04515 0.78 -0.7
888,193 + MPMX19_04515 0.78 -1.6
888,193 + MPMX19_04515 0.78 -0.0
888,193 + MPMX19_04515 0.78 +0.3
888,193 + MPMX19_04515 0.78 -0.5
888,193 + MPMX19_04515 0.78 +2.5
888,193 + MPMX19_04515 0.78 -0.9
888,193 + MPMX19_04515 0.78 -0.4
888,194 - MPMX19_04515 0.78 +0.6
888,194 - MPMX19_04515 0.78 -0.9
888,217 + MPMX19_04515 0.83 -0.7
888,217 + MPMX19_04515 0.83 +1.0
888,218 - MPMX19_04515 0.83 -0.7
888,218 - MPMX19_04515 0.83 -0.3
888,218 - MPMX19_04515 0.83 -0.6
888,405 + +0.2
888,405 + +1.4
888,406 - -0.8
888,582 + MPMX19_04516 0.19 -0.0
888,583 - MPMX19_04516 0.19 -1.3
888,639 + MPMX19_04516 0.22 +0.5
888,639 + MPMX19_04516 0.22 +0.5
888,639 + MPMX19_04516 0.22 -0.0
888,639 + MPMX19_04516 0.22 -0.6
888,639 + MPMX19_04516 0.22 +0.4
888,639 + MPMX19_04516 0.22 -1.0
888,639 + MPMX19_04516 0.22 -0.3
888,639 + MPMX19_04516 0.22 -1.3
888,640 - MPMX19_04516 0.22 -0.9
888,640 - MPMX19_04516 0.22 +1.7
888,640 - MPMX19_04516 0.22 +1.3
888,640 - MPMX19_04516 0.22 -0.8
888,640 - MPMX19_04516 0.22 -0.7

Or see this region's nucleotide sequence