Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04460 and MPMX19_04461 are separated by 44 nucleotides MPMX19_04461 and MPMX19_04462 are separated by 154 nucleotides MPMX19_04462 and MPMX19_04463 are separated by 335 nucleotides
MPMX19_04460: MPMX19_04460 - Pyruvate kinase, at 827,257 to 828,723
_04460
MPMX19_04461: MPMX19_04461 - HTH-type transcriptional repressor RspR, at 828,768 to 829,457
_04461
MPMX19_04462: MPMX19_04462 - Thiamine-phosphate synthase, at 829,612 to 830,307
_04462
MPMX19_04463: MPMX19_04463 - Oxalate:formate antiporter, at 830,643 to 831,950
_04463
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1
2 at 828.678 kb on + strand at 828.678 kb on + strand at 828.678 kb on + strand at 828.678 kb on + strand at 828.678 kb on + strand at 828.679 kb on - strand at 828.679 kb on - strand at 828.679 kb on - strand at 828.679 kb on - strand at 828.702 kb on + strand at 828.703 kb on - strand at 828.703 kb on - strand at 828.703 kb on - strand at 828.703 kb on - strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.747 kb on + strand at 828.748 kb on - strand at 828.748 kb on - strand at 828.748 kb on - strand at 828.769 kb on + strand at 828.769 kb on + strand at 828.770 kb on - strand at 829.042 kb on + strand, within MPMX19_04461 at 829.042 kb on + strand, within MPMX19_04461 at 829.043 kb on - strand, within MPMX19_04461 at 829.043 kb on - strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.354 kb on + strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.355 kb on - strand, within MPMX19_04461 at 829.393 kb on + strand at 829.393 kb on + strand at 829.393 kb on + strand at 829.393 kb on + strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.394 kb on - strand at 829.537 kb on + strand at 829.538 kb on - strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.542 kb on + strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.543 kb on - strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.546 kb on + strand at 829.547 kb on - strand at 829.547 kb on - strand at 829.601 kb on + strand at 829.601 kb on + strand at 829.601 kb on + strand at 829.601 kb on + strand at 829.602 kb on - strand at 829.602 kb on - strand at 829.841 kb on + strand, within MPMX19_04462 at 829.886 kb on + strand, within MPMX19_04462 at 829.886 kb on + strand, within MPMX19_04462 at 829.886 kb on + strand, within MPMX19_04462 at 829.886 kb on + strand, within MPMX19_04462 at 829.886 kb on + strand, within MPMX19_04462 at 829.886 kb on + strand, within MPMX19_04462 at 829.887 kb on - strand, within MPMX19_04462 at 829.887 kb on - strand, within MPMX19_04462 at 829.887 kb on - strand, within MPMX19_04462 at 829.887 kb on - strand, within MPMX19_04462 at 829.954 kb on + strand, within MPMX19_04462 at 829.955 kb on - strand, within MPMX19_04462 at 829.955 kb on - strand, within MPMX19_04462 at 830.376 kb on - strand at 830.376 kb on - strand at 830.651 kb on + strand at 830.651 kb on + strand at 830.652 kb on - strand at 830.652 kb on - strand at 830.652 kb on - strand at 830.652 kb on - strand at 830.667 kb on - strand at 830.751 kb on + strand at 830.751 kb on + strand at 830.751 kb on + strand at 830.751 kb on + strand at 830.751 kb on + strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.752 kb on - strand at 830.976 kb on + strand, within MPMX19_04463 at 830.976 kb on + strand, within MPMX19_04463 at 830.976 kb on + strand, within MPMX19_04463 at 830.976 kb on + strand, within MPMX19_04463 at 830.976 kb on + strand, within MPMX19_04463 at 830.976 kb on + strand, within MPMX19_04463 at 830.976 kb on + strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 830.977 kb on - strand, within MPMX19_04463 at 831.018 kb on + strand, within MPMX19_04463 at 831.018 kb on + strand, within MPMX19_04463 at 831.019 kb on - strand, within MPMX19_04463 at 831.019 kb on - strand, within MPMX19_04463 at 831.019 kb on - strand, within MPMX19_04463 at 831.019 kb on - strand, within MPMX19_04463 at 831.019 kb on - strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.288 kb on + strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.289 kb on - strand, within MPMX19_04463 at 831.290 kb on + strand, within MPMX19_04463 at 831.290 kb on + strand, within MPMX19_04463 at 831.290 kb on + strand, within MPMX19_04463 at 831.290 kb on + strand, within MPMX19_04463 at 831.290 kb on + strand, within MPMX19_04463 at 831.291 kb on - strand, within MPMX19_04463 at 831.291 kb on - strand, within MPMX19_04463 at 831.291 kb on - strand, within MPMX19_04463 at 831.291 kb on - strand, within MPMX19_04463 at 831.291 kb on - strand, within MPMX19_04463
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 828,678 + +0.3 828,678 + +0.2 828,678 + -2.0 828,678 + +1.2 828,678 + -0.1 828,679 - +0.0 828,679 - +1.1 828,679 - -0.3 828,679 - -1.2 828,702 + -0.1 828,703 - -2.3 828,703 - -0.7 828,703 - +0.4 828,703 - -0.6 828,747 + -1.6 828,747 + +1.5 828,747 + -1.6 828,747 + +2.7 828,747 + +0.4 828,748 - -1.7 828,748 - -1.1 828,748 - -0.3 828,769 + +0.0 828,769 + -0.3 828,770 - -1.0 829,042 + MPMX19_04461 0.40 -1.3 829,042 + MPMX19_04461 0.40 -1.6 829,043 - MPMX19_04461 0.40 +0.9 829,043 - MPMX19_04461 0.40 -0.2 829,354 + MPMX19_04461 0.85 -1.1 829,354 + MPMX19_04461 0.85 -0.6 829,354 + MPMX19_04461 0.85 -0.5 829,354 + MPMX19_04461 0.85 -0.5 829,354 + MPMX19_04461 0.85 -1.6 829,354 + MPMX19_04461 0.85 -1.0 829,354 + MPMX19_04461 0.85 -0.6 829,355 - MPMX19_04461 0.85 -0.5 829,355 - MPMX19_04461 0.85 -0.6 829,355 - MPMX19_04461 0.85 -1.2 829,355 - MPMX19_04461 0.85 -1.1 829,355 - MPMX19_04461 0.85 -0.8 829,355 - MPMX19_04461 0.85 -0.8 829,355 - MPMX19_04461 0.85 -1.1 829,355 - MPMX19_04461 0.85 -0.3 829,355 - MPMX19_04461 0.85 +0.2 829,355 - MPMX19_04461 0.85 -2.1 829,393 + -0.2 829,393 + -0.3 829,393 + -0.1 829,393 + -1.1 829,394 - +0.2 829,394 - -0.8 829,394 - -1.0 829,394 - -1.0 829,394 - -1.1 829,537 + -2.4 829,538 - +0.1 829,542 + -1.1 829,542 + -0.3 829,542 + -0.3 829,542 + -0.5 829,542 + -0.7 829,542 + -0.8 829,542 + -0.8 829,542 + -0.3 829,542 + -0.7 829,542 + -1.8 829,543 - +0.2 829,543 - +0.0 829,543 - -0.2 829,543 - -0.8 829,543 - +0.3 829,543 - -0.5 829,543 - -0.9 829,543 - -1.5 829,543 - +0.2 829,543 - -0.7 829,546 + -1.0 829,546 + -0.6 829,546 + -0.4 829,546 + +0.7 829,546 + -0.3 829,547 - -0.4 829,547 - -0.6 829,601 + -1.4 829,601 + +0.6 829,601 + +1.6 829,601 + -2.6 829,602 - -0.8 829,602 - +0.7 829,841 + MPMX19_04462 0.33 +0.2 829,886 + MPMX19_04462 0.39 -0.3 829,886 + MPMX19_04462 0.39 -0.2 829,886 + MPMX19_04462 0.39 +0.1 829,886 + MPMX19_04462 0.39 +0.3 829,886 + MPMX19_04462 0.39 -0.4 829,886 + MPMX19_04462 0.39 -1.1 829,887 - MPMX19_04462 0.40 -0.8 829,887 - MPMX19_04462 0.40 +0.0 829,887 - MPMX19_04462 0.40 -1.6 829,887 - MPMX19_04462 0.40 -0.8 829,954 + MPMX19_04462 0.49 -0.4 829,955 - MPMX19_04462 0.49 -1.1 829,955 - MPMX19_04462 0.49 -0.8 830,376 - -2.2 830,376 - -1.7 830,651 + +0.4 830,651 + -2.1 830,652 - -0.1 830,652 - -1.1 830,652 - -0.6 830,652 - -1.0 830,667 - -0.3 830,751 + -0.6 830,751 + +1.1 830,751 + -1.1 830,751 + +0.3 830,751 + -1.5 830,752 - -0.7 830,752 - -1.3 830,752 - +0.5 830,752 - +0.6 830,752 - -0.3 830,752 - -0.1 830,752 - -0.8 830,752 - -1.1 830,752 - -2.0 830,976 + MPMX19_04463 0.25 -1.3 830,976 + MPMX19_04463 0.25 +0.3 830,976 + MPMX19_04463 0.25 -1.8 830,976 + MPMX19_04463 0.25 -0.0 830,976 + MPMX19_04463 0.25 -1.4 830,976 + MPMX19_04463 0.25 -0.3 830,976 + MPMX19_04463 0.25 +0.2 830,977 - MPMX19_04463 0.26 -1.6 830,977 - MPMX19_04463 0.26 -0.6 830,977 - MPMX19_04463 0.26 +1.7 830,977 - MPMX19_04463 0.26 +0.1 830,977 - MPMX19_04463 0.26 -0.2 830,977 - MPMX19_04463 0.26 +0.8 830,977 - MPMX19_04463 0.26 +1.7 830,977 - MPMX19_04463 0.26 -0.5 831,018 + MPMX19_04463 0.29 +0.7 831,018 + MPMX19_04463 0.29 +0.6 831,019 - MPMX19_04463 0.29 -0.3 831,019 - MPMX19_04463 0.29 -0.5 831,019 - MPMX19_04463 0.29 +0.4 831,019 - MPMX19_04463 0.29 -1.0 831,019 - MPMX19_04463 0.29 +1.7 831,288 + MPMX19_04463 0.49 +0.4 831,288 + MPMX19_04463 0.49 +0.4 831,288 + MPMX19_04463 0.49 -0.8 831,288 + MPMX19_04463 0.49 +0.5 831,288 + MPMX19_04463 0.49 -1.0 831,288 + MPMX19_04463 0.49 +0.9 831,288 + MPMX19_04463 0.49 -1.7 831,288 + MPMX19_04463 0.49 -0.9 831,288 + MPMX19_04463 0.49 +0.0 831,288 + MPMX19_04463 0.49 -0.1 831,288 + MPMX19_04463 0.49 +0.2 831,288 + MPMX19_04463 0.49 +0.7 831,288 + MPMX19_04463 0.49 -0.7 831,288 + MPMX19_04463 0.49 -0.8 831,288 + MPMX19_04463 0.49 -0.8 831,288 + MPMX19_04463 0.49 +0.2 831,288 + MPMX19_04463 0.49 -2.1 831,289 - MPMX19_04463 0.49 -1.1 831,289 - MPMX19_04463 0.49 -0.8 831,289 - MPMX19_04463 0.49 -1.4 831,289 - MPMX19_04463 0.49 -1.9 831,289 - MPMX19_04463 0.49 -0.2 831,289 - MPMX19_04463 0.49 -0.7 831,289 - MPMX19_04463 0.49 +0.6 831,289 - MPMX19_04463 0.49 +1.1 831,289 - MPMX19_04463 0.49 -0.3 831,289 - MPMX19_04463 0.49 -0.8 831,289 - MPMX19_04463 0.49 +1.2 831,290 + MPMX19_04463 0.49 +0.2 831,290 + MPMX19_04463 0.49 +0.9 831,290 + MPMX19_04463 0.49 -1.3 831,290 + MPMX19_04463 0.49 -1.7 831,290 + MPMX19_04463 0.49 +0.0 831,291 - MPMX19_04463 0.50 -0.4 831,291 - MPMX19_04463 0.50 +0.6 831,291 - MPMX19_04463 0.50 -0.2 831,291 - MPMX19_04463 0.50 +0.5 831,291 - MPMX19_04463 0.50 -0.7
Or see this region's nucleotide sequence