Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04016

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04015 and MPMX19_04016 overlap by 4 nucleotidesMPMX19_04016 and MPMX19_04017 are separated by 35 nucleotides MPMX19_04015: MPMX19_04015 - Oligopeptide transport ATP-binding protein OppF, at 310,735 to 311,736 _04015 MPMX19_04016: MPMX19_04016 - Oligopeptide transport ATP-binding protein OppD, at 311,733 to 312,737 _04016 MPMX19_04017: MPMX19_04017 - D-threonine aldolase, at 312,773 to 313,831 _04017 Position (kb) 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 310.786 kb on + strandat 310.787 kb on - strandat 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.967 kb on + strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.968 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 310.989 kb on - strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.030 kb on + strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.031 kb on - strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.057 kb on + strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.058 kb on - strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.411 kb on + strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.412 kb on - strand, within MPMX19_04015at 311.724 kb on + strandat 311.724 kb on + strandat 311.725 kb on - strandat 311.725 kb on - strandat 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.899 kb on + strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.900 kb on - strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.965 kb on + strand, within MPMX19_04016at 311.966 kb on - strand, within MPMX19_04016at 311.966 kb on - strand, within MPMX19_04016at 312.028 kb on + strand, within MPMX19_04016at 312.028 kb on + strand, within MPMX19_04016at 312.028 kb on + strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.029 kb on - strand, within MPMX19_04016at 312.262 kb on + strand, within MPMX19_04016at 312.358 kb on + strand, within MPMX19_04016at 312.359 kb on - strand, within MPMX19_04016at 312.359 kb on - strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.394 kb on + strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.395 kb on - strand, within MPMX19_04016at 312.760 kb on + strandat 312.761 kb on - strandat 312.761 kb on - strandat 312.982 kb on - strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.164 kb on + strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.165 kb on - strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.170 kb on + strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.171 kb on - strand, within MPMX19_04017at 313.326 kb on + strand, within MPMX19_04017at 313.327 kb on - strand, within MPMX19_04017at 313.584 kb on + strand, within MPMX19_04017at 313.584 kb on + strand, within MPMX19_04017at 313.585 kb on - strand, within MPMX19_04017at 313.585 kb on - strand, within MPMX19_04017at 313.585 kb on - strand, within MPMX19_04017

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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310,786 + -1.8
310,787 - -1.8
310,967 + MPMX19_04015 0.23 -1.0
310,967 + MPMX19_04015 0.23 -0.8
310,967 + MPMX19_04015 0.23 -0.4
310,967 + MPMX19_04015 0.23 -0.9
310,968 - MPMX19_04015 0.23 -0.5
310,968 - MPMX19_04015 0.23 -0.5
310,968 - MPMX19_04015 0.23 +1.1
310,968 - MPMX19_04015 0.23 -1.9
310,968 - MPMX19_04015 0.23 -0.8
310,968 - MPMX19_04015 0.23 +1.5
310,968 - MPMX19_04015 0.23 -0.4
310,968 - MPMX19_04015 0.23 +0.1
310,989 - MPMX19_04015 0.25 +0.1
310,989 - MPMX19_04015 0.25 +0.2
310,989 - MPMX19_04015 0.25 -0.1
310,989 - MPMX19_04015 0.25 +1.0
311,030 + MPMX19_04015 0.29 -1.3
311,030 + MPMX19_04015 0.29 -1.3
311,030 + MPMX19_04015 0.29 -2.0
311,030 + MPMX19_04015 0.29 +0.1
311,030 + MPMX19_04015 0.29 -0.1
311,030 + MPMX19_04015 0.29 -0.4
311,030 + MPMX19_04015 0.29 -1.5
311,030 + MPMX19_04015 0.29 -1.9
311,030 + MPMX19_04015 0.29 +0.6
311,030 + MPMX19_04015 0.29 +0.9
311,030 + MPMX19_04015 0.29 +0.5
311,030 + MPMX19_04015 0.29 +0.1
311,030 + MPMX19_04015 0.29 -0.1
311,030 + MPMX19_04015 0.29 -0.6
311,030 + MPMX19_04015 0.29 +1.7
311,030 + MPMX19_04015 0.29 -0.2
311,030 + MPMX19_04015 0.29 -0.7
311,030 + MPMX19_04015 0.29 -0.1
311,030 + MPMX19_04015 0.29 -0.8
311,030 + MPMX19_04015 0.29 +0.3
311,030 + MPMX19_04015 0.29 -1.0
311,031 - MPMX19_04015 0.30 -0.6
311,031 - MPMX19_04015 0.30 -0.6
311,031 - MPMX19_04015 0.30 -0.1
311,031 - MPMX19_04015 0.30 +0.5
311,031 - MPMX19_04015 0.30 +1.7
311,031 - MPMX19_04015 0.30 +0.3
311,031 - MPMX19_04015 0.30 -1.4
311,031 - MPMX19_04015 0.30 -0.8
311,031 - MPMX19_04015 0.30 -0.1
311,031 - MPMX19_04015 0.30 -0.1
311,031 - MPMX19_04015 0.30 -0.7
311,031 - MPMX19_04015 0.30 +0.1
311,031 - MPMX19_04015 0.30 -0.3
311,031 - MPMX19_04015 0.30 +0.0
311,057 + MPMX19_04015 0.32 -0.6
311,057 + MPMX19_04015 0.32 -1.3
311,057 + MPMX19_04015 0.32 +0.7
311,057 + MPMX19_04015 0.32 +1.0
311,058 - MPMX19_04015 0.32 -0.5
311,058 - MPMX19_04015 0.32 -0.6
311,058 - MPMX19_04015 0.32 -0.6
311,058 - MPMX19_04015 0.32 -0.9
311,058 - MPMX19_04015 0.32 -0.1
311,058 - MPMX19_04015 0.32 +0.1
311,411 + MPMX19_04015 0.67 -0.6
311,411 + MPMX19_04015 0.67 -0.5
311,411 + MPMX19_04015 0.67 -1.9
311,411 + MPMX19_04015 0.67 +0.0
311,411 + MPMX19_04015 0.67 -1.3
311,412 - MPMX19_04015 0.68 +0.4
311,412 - MPMX19_04015 0.68 -0.7
311,412 - MPMX19_04015 0.68 -1.2
311,724 + -0.5
311,724 + -0.5
311,725 - -2.2
311,725 - +0.9
311,899 + MPMX19_04016 0.17 -1.1
311,899 + MPMX19_04016 0.17 -0.3
311,899 + MPMX19_04016 0.17 -1.9
311,899 + MPMX19_04016 0.17 +0.9
311,899 + MPMX19_04016 0.17 -1.8
311,899 + MPMX19_04016 0.17 +1.5
311,899 + MPMX19_04016 0.17 +0.8
311,900 - MPMX19_04016 0.17 +1.1
311,900 - MPMX19_04016 0.17 -0.7
311,900 - MPMX19_04016 0.17 +1.3
311,900 - MPMX19_04016 0.17 -1.8
311,900 - MPMX19_04016 0.17 -0.9
311,900 - MPMX19_04016 0.17 -1.0
311,965 + MPMX19_04016 0.23 -0.3
311,965 + MPMX19_04016 0.23 +0.4
311,965 + MPMX19_04016 0.23 -0.3
311,965 + MPMX19_04016 0.23 -0.8
311,965 + MPMX19_04016 0.23 -0.5
311,965 + MPMX19_04016 0.23 -1.3
311,965 + MPMX19_04016 0.23 +1.1
311,965 + MPMX19_04016 0.23 -0.3
311,965 + MPMX19_04016 0.23 -0.9
311,965 + MPMX19_04016 0.23 -0.9
311,965 + MPMX19_04016 0.23 -0.9
311,966 - MPMX19_04016 0.23 -1.3
311,966 - MPMX19_04016 0.23 +0.4
312,028 + MPMX19_04016 0.29 +0.2
312,028 + MPMX19_04016 0.29 +0.2
312,028 + MPMX19_04016 0.29 +0.7
312,029 - MPMX19_04016 0.29 +1.2
312,029 - MPMX19_04016 0.29 +0.1
312,029 - MPMX19_04016 0.29 +0.6
312,029 - MPMX19_04016 0.29 +2.4
312,029 - MPMX19_04016 0.29 +0.4
312,029 - MPMX19_04016 0.29 +0.2
312,029 - MPMX19_04016 0.29 -0.5
312,029 - MPMX19_04016 0.29 -0.8
312,029 - MPMX19_04016 0.29 +0.2
312,029 - MPMX19_04016 0.29 -0.1
312,029 - MPMX19_04016 0.29 -0.2
312,029 - MPMX19_04016 0.29 -1.7
312,029 - MPMX19_04016 0.29 -0.4
312,262 + MPMX19_04016 0.53 -1.5
312,358 + MPMX19_04016 0.62 -1.1
312,359 - MPMX19_04016 0.62 -2.0
312,359 - MPMX19_04016 0.62 -0.9
312,394 + MPMX19_04016 0.66 +0.5
312,394 + MPMX19_04016 0.66 -1.3
312,394 + MPMX19_04016 0.66 +0.6
312,394 + MPMX19_04016 0.66 -0.5
312,394 + MPMX19_04016 0.66 +0.5
312,394 + MPMX19_04016 0.66 +0.1
312,394 + MPMX19_04016 0.66 -0.2
312,394 + MPMX19_04016 0.66 -0.4
312,394 + MPMX19_04016 0.66 -0.8
312,395 - MPMX19_04016 0.66 -1.5
312,395 - MPMX19_04016 0.66 +0.1
312,395 - MPMX19_04016 0.66 -1.9
312,395 - MPMX19_04016 0.66 +0.9
312,760 + -0.3
312,761 - +0.0
312,761 - +0.8
312,982 - MPMX19_04017 0.20 +0.9
313,164 + MPMX19_04017 0.37 -0.2
313,164 + MPMX19_04017 0.37 +0.4
313,164 + MPMX19_04017 0.37 -0.5
313,164 + MPMX19_04017 0.37 -1.0
313,164 + MPMX19_04017 0.37 -2.8
313,164 + MPMX19_04017 0.37 +0.1
313,164 + MPMX19_04017 0.37 -0.4
313,164 + MPMX19_04017 0.37 -0.8
313,164 + MPMX19_04017 0.37 -0.6
313,165 - MPMX19_04017 0.37 +0.2
313,165 - MPMX19_04017 0.37 -0.3
313,165 - MPMX19_04017 0.37 -0.5
313,165 - MPMX19_04017 0.37 +0.5
313,165 - MPMX19_04017 0.37 +0.2
313,165 - MPMX19_04017 0.37 -0.1
313,165 - MPMX19_04017 0.37 -0.5
313,165 - MPMX19_04017 0.37 +1.5
313,165 - MPMX19_04017 0.37 -1.5
313,165 - MPMX19_04017 0.37 +2.3
313,165 - MPMX19_04017 0.37 -0.7
313,165 - MPMX19_04017 0.37 -0.8
313,165 - MPMX19_04017 0.37 -0.1
313,170 + MPMX19_04017 0.37 +0.7
313,170 + MPMX19_04017 0.37 -0.2
313,170 + MPMX19_04017 0.37 +1.1
313,170 + MPMX19_04017 0.37 +1.7
313,170 + MPMX19_04017 0.37 -0.9
313,170 + MPMX19_04017 0.37 +0.5
313,170 + MPMX19_04017 0.37 -0.3
313,170 + MPMX19_04017 0.37 +0.7
313,170 + MPMX19_04017 0.37 -0.5
313,170 + MPMX19_04017 0.37 -1.1
313,170 + MPMX19_04017 0.37 -0.7
313,170 + MPMX19_04017 0.37 +0.3
313,170 + MPMX19_04017 0.37 -0.8
313,170 + MPMX19_04017 0.37 -1.4
313,170 + MPMX19_04017 0.37 -1.5
313,170 + MPMX19_04017 0.37 -1.7
313,170 + MPMX19_04017 0.37 +1.2
313,170 + MPMX19_04017 0.37 -1.3
313,170 + MPMX19_04017 0.37 +1.5
313,170 + MPMX19_04017 0.37 -1.2
313,170 + MPMX19_04017 0.37 -1.3
313,171 - MPMX19_04017 0.38 +0.4
313,171 - MPMX19_04017 0.38 +0.7
313,171 - MPMX19_04017 0.38 +0.3
313,171 - MPMX19_04017 0.38 -0.4
313,171 - MPMX19_04017 0.38 +0.3
313,171 - MPMX19_04017 0.38 -0.9
313,171 - MPMX19_04017 0.38 -0.5
313,171 - MPMX19_04017 0.38 -2.0
313,171 - MPMX19_04017 0.38 +2.0
313,171 - MPMX19_04017 0.38 -1.5
313,171 - MPMX19_04017 0.38 -0.7
313,171 - MPMX19_04017 0.38 +0.7
313,171 - MPMX19_04017 0.38 +2.0
313,171 - MPMX19_04017 0.38 +1.0
313,171 - MPMX19_04017 0.38 +1.0
313,171 - MPMX19_04017 0.38 -0.4
313,171 - MPMX19_04017 0.38 +0.5
313,171 - MPMX19_04017 0.38 +0.4
313,171 - MPMX19_04017 0.38 -0.9
313,171 - MPMX19_04017 0.38 -0.1
313,171 - MPMX19_04017 0.38 -0.5
313,171 - MPMX19_04017 0.38 -0.2
313,171 - MPMX19_04017 0.38 +0.6
313,171 - MPMX19_04017 0.38 +0.4
313,326 + MPMX19_04017 0.52 -0.1
313,327 - MPMX19_04017 0.52 +0.9
313,584 + MPMX19_04017 0.77 +0.7
313,584 + MPMX19_04017 0.77 -0.6
313,585 - MPMX19_04017 0.77 -1.0
313,585 - MPMX19_04017 0.77 -1.6
313,585 - MPMX19_04017 0.77 -0.3

Or see this region's nucleotide sequence