Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03318

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03317 and MPMX19_03318 are separated by 62 nucleotidesMPMX19_03318 and MPMX19_03319 are separated by 36 nucleotides MPMX19_03317: MPMX19_03317 - hypothetical protein, at 665,185 to 666,366 _03317 MPMX19_03318: MPMX19_03318 - hypothetical protein, at 666,429 to 667,916 _03318 MPMX19_03319: MPMX19_03319 - hypothetical protein, at 667,953 to 669,902 _03319 Position (kb) 666 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 665.450 kb on + strand, within MPMX19_03317at 665.450 kb on + strand, within MPMX19_03317at 665.451 kb on - strand, within MPMX19_03317at 665.451 kb on - strand, within MPMX19_03317at 665.546 kb on + strand, within MPMX19_03317at 665.589 kb on - strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.768 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.771 kb on + strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.772 kb on - strand, within MPMX19_03317at 665.786 kb on + strand, within MPMX19_03317at 665.786 kb on + strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.787 kb on - strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.828 kb on + strand, within MPMX19_03317at 665.829 kb on - strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.859 kb on + strand, within MPMX19_03317at 665.860 kb on - strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.861 kb on + strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.862 kb on - strand, within MPMX19_03317at 665.876 kb on + strand, within MPMX19_03317at 666.093 kb on + strand, within MPMX19_03317at 666.173 kb on + strand, within MPMX19_03317at 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.269 kb on + strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.270 kb on - strandat 666.489 kb on + strandat 666.489 kb on + strandat 666.489 kb on + strandat 666.490 kb on - strandat 666.490 kb on - strandat 666.490 kb on - strandat 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.799 kb on + strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 666.800 kb on - strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.768 kb on + strandat 667.768 kb on + strandat 667.768 kb on + strandat 667.768 kb on + strandat 667.768 kb on + strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.837 kb on + strandat 667.837 kb on + strandat 667.837 kb on + strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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665,450 + MPMX19_03317 0.22 +1.2
665,450 + MPMX19_03317 0.22 -0.8
665,451 - MPMX19_03317 0.23 -0.0
665,451 - MPMX19_03317 0.23 -0.8
665,546 + MPMX19_03317 0.31 +0.2
665,589 - MPMX19_03317 0.34 +0.0
665,768 + MPMX19_03317 0.49 -0.8
665,768 + MPMX19_03317 0.49 +0.3
665,768 + MPMX19_03317 0.49 -0.4
665,768 + MPMX19_03317 0.49 -0.6
665,768 + MPMX19_03317 0.49 -0.8
665,768 + MPMX19_03317 0.49 -0.4
665,768 + MPMX19_03317 0.49 -1.8
665,768 + MPMX19_03317 0.49 -0.7
665,771 + MPMX19_03317 0.50 -1.3
665,771 + MPMX19_03317 0.50 +0.1
665,771 + MPMX19_03317 0.50 -0.3
665,771 + MPMX19_03317 0.50 -2.1
665,772 - MPMX19_03317 0.50 +2.3
665,772 - MPMX19_03317 0.50 +0.0
665,772 - MPMX19_03317 0.50 +2.1
665,772 - MPMX19_03317 0.50 -0.1
665,772 - MPMX19_03317 0.50 -1.3
665,772 - MPMX19_03317 0.50 -0.3
665,772 - MPMX19_03317 0.50 -0.1
665,772 - MPMX19_03317 0.50 -1.5
665,772 - MPMX19_03317 0.50 -0.7
665,786 + MPMX19_03317 0.51 -0.8
665,786 + MPMX19_03317 0.51 -0.0
665,787 - MPMX19_03317 0.51 -0.6
665,787 - MPMX19_03317 0.51 -0.7
665,787 - MPMX19_03317 0.51 -0.7
665,787 - MPMX19_03317 0.51 -0.0
665,828 + MPMX19_03317 0.54 -0.0
665,828 + MPMX19_03317 0.54 -0.2
665,828 + MPMX19_03317 0.54 +0.8
665,829 - MPMX19_03317 0.54 -0.1
665,859 + MPMX19_03317 0.57 -0.6
665,859 + MPMX19_03317 0.57 -0.4
665,859 + MPMX19_03317 0.57 -0.9
665,859 + MPMX19_03317 0.57 -0.8
665,859 + MPMX19_03317 0.57 -0.0
665,860 - MPMX19_03317 0.57 +0.1
665,861 + MPMX19_03317 0.57 -1.4
665,861 + MPMX19_03317 0.57 -2.5
665,861 + MPMX19_03317 0.57 -0.2
665,861 + MPMX19_03317 0.57 -0.6
665,861 + MPMX19_03317 0.57 -0.4
665,861 + MPMX19_03317 0.57 -0.5
665,862 - MPMX19_03317 0.57 -1.0
665,862 - MPMX19_03317 0.57 -0.4
665,862 - MPMX19_03317 0.57 -2.4
665,862 - MPMX19_03317 0.57 -1.4
665,862 - MPMX19_03317 0.57 +0.7
665,862 - MPMX19_03317 0.57 +0.2
665,876 + MPMX19_03317 0.58 +0.2
666,093 + MPMX19_03317 0.77 -0.9
666,173 + MPMX19_03317 0.84 +0.5
666,269 + -0.1
666,269 + -0.3
666,269 + +0.4
666,269 + -0.8
666,269 + +0.9
666,269 + -2.0
666,269 + -0.4
666,269 + -0.7
666,269 + +0.7
666,269 + +0.2
666,269 + -0.1
666,269 + +0.6
666,269 + -0.6
666,269 + +0.2
666,269 + -2.1
666,269 + -0.4
666,269 + -0.7
666,269 + -0.6
666,269 + -0.6
666,269 + -0.5
666,269 + -1.4
666,269 + +0.6
666,269 + +0.6
666,269 + -0.7
666,269 + +0.8
666,269 + +0.7
666,269 + -0.4
666,269 + -1.0
666,270 - +1.0
666,270 - -0.7
666,270 - -0.6
666,270 - -0.8
666,270 - -1.1
666,270 - -0.1
666,270 - -0.3
666,270 - +0.8
666,270 - +0.8
666,270 - -0.8
666,270 - +0.4
666,270 - -0.2
666,270 - -1.6
666,270 - +0.4
666,489 + -1.2
666,489 + -0.1
666,489 + -2.6
666,490 - -0.9
666,490 - -0.4
666,490 - +1.6
666,799 + MPMX19_03318 0.25 -0.2
666,799 + MPMX19_03318 0.25 -0.5
666,799 + MPMX19_03318 0.25 -2.2
666,799 + MPMX19_03318 0.25 -0.0
666,799 + MPMX19_03318 0.25 -0.7
666,800 - MPMX19_03318 0.25 -2.0
666,800 - MPMX19_03318 0.25 -2.9
666,800 - MPMX19_03318 0.25 -0.9
666,800 - MPMX19_03318 0.25 -1.8
667,111 + MPMX19_03318 0.46 -1.2
667,111 + MPMX19_03318 0.46 -0.0
667,111 + MPMX19_03318 0.46 -0.7
667,111 + MPMX19_03318 0.46 -2.5
667,111 + MPMX19_03318 0.46 +0.2
667,111 + MPMX19_03318 0.46 -0.3
667,111 + MPMX19_03318 0.46 +1.2
667,111 + MPMX19_03318 0.46 -1.4
667,111 + MPMX19_03318 0.46 +0.2
667,112 - MPMX19_03318 0.46 -1.2
667,112 - MPMX19_03318 0.46 +0.2
667,112 - MPMX19_03318 0.46 -1.0
667,112 - MPMX19_03318 0.46 -1.9
667,123 + MPMX19_03318 0.47 +0.5
667,123 + MPMX19_03318 0.47 -0.4
667,123 + MPMX19_03318 0.47 +0.2
667,353 + MPMX19_03318 0.62 -0.2
667,353 + MPMX19_03318 0.62 -1.9
667,353 + MPMX19_03318 0.62 -0.8
667,354 - MPMX19_03318 0.62 +0.7
667,354 - MPMX19_03318 0.62 -0.4
667,354 - MPMX19_03318 0.62 +1.2
667,354 - MPMX19_03318 0.62 +0.6
667,354 - MPMX19_03318 0.62 -0.5
667,354 - MPMX19_03318 0.62 -1.2
667,450 + MPMX19_03318 0.69 -1.2
667,450 + MPMX19_03318 0.69 -0.5
667,450 + MPMX19_03318 0.69 +0.2
667,450 + MPMX19_03318 0.69 -0.7
667,451 - MPMX19_03318 0.69 -1.2
667,451 - MPMX19_03318 0.69 +0.8
667,451 - MPMX19_03318 0.69 -0.5
667,451 - MPMX19_03318 0.69 -0.1
667,708 + MPMX19_03318 0.86 -0.9
667,708 + MPMX19_03318 0.86 -0.8
667,708 + MPMX19_03318 0.86 -0.7
667,708 + MPMX19_03318 0.86 -0.4
667,708 + MPMX19_03318 0.86 -1.2
667,708 + MPMX19_03318 0.86 -1.4
667,708 + MPMX19_03318 0.86 -0.0
667,708 + MPMX19_03318 0.86 -0.8
667,709 - MPMX19_03318 0.86 -1.2
667,709 - MPMX19_03318 0.86 -0.4
667,709 - MPMX19_03318 0.86 -0.8
667,709 - MPMX19_03318 0.86 +0.4
667,709 - MPMX19_03318 0.86 -0.0
667,709 - MPMX19_03318 0.86 +1.0
667,768 + +0.6
667,768 + -0.3
667,768 + +1.0
667,768 + +0.3
667,768 + -0.8
667,769 - -2.0
667,769 - +0.9
667,769 - -1.2
667,769 - -0.0
667,769 - -3.6
667,769 - +0.8
667,837 + -0.0
667,837 + -0.8
667,837 + +0.7
667,838 - -0.4
667,838 - +0.1
667,838 - -0.9
667,838 - -0.6
667,838 - -0.6
667,838 - -1.6
667,838 - +0.6
668,383 + MPMX19_03319 0.22 -1.8
668,383 + MPMX19_03319 0.22 -1.4
668,383 + MPMX19_03319 0.22 -0.2
668,383 + MPMX19_03319 0.22 -0.8
668,383 + MPMX19_03319 0.22 -1.2
668,383 + MPMX19_03319 0.22 -0.6
668,383 + MPMX19_03319 0.22 -0.8
668,383 + MPMX19_03319 0.22 +0.1
668,383 + MPMX19_03319 0.22 -1.0
668,383 + MPMX19_03319 0.22 -0.3
668,383 + MPMX19_03319 0.22 -0.6
668,383 + MPMX19_03319 0.22 -0.9
668,384 - MPMX19_03319 0.22 +0.2
668,384 - MPMX19_03319 0.22 -1.3
668,384 - MPMX19_03319 0.22 -1.4
668,384 - MPMX19_03319 0.22 -0.4
668,384 - MPMX19_03319 0.22 -0.3
668,384 - MPMX19_03319 0.22 -1.7
668,384 - MPMX19_03319 0.22 -0.8
668,384 - MPMX19_03319 0.22 +1.8
668,384 - MPMX19_03319 0.22 +1.1
668,384 - MPMX19_03319 0.22 -0.8
668,384 - MPMX19_03319 0.22 -2.0
668,911 + MPMX19_03319 0.49 -1.2
668,911 + MPMX19_03319 0.49 -0.0
668,911 + MPMX19_03319 0.49 -0.9
668,911 + MPMX19_03319 0.49 +1.2
668,911 + MPMX19_03319 0.49 +1.8
668,911 + MPMX19_03319 0.49 -1.2
668,912 - MPMX19_03319 0.49 -1.4
668,912 - MPMX19_03319 0.49 -1.7
668,912 - MPMX19_03319 0.49 +0.3
668,912 - MPMX19_03319 0.49 -1.2
668,912 - MPMX19_03319 0.49 +0.4
668,912 - MPMX19_03319 0.49 +1.2
668,912 - MPMX19_03319 0.49 +0.2
668,912 - MPMX19_03319 0.49 +0.6

Or see this region's nucleotide sequence