Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02880 and MPMX19_02881 are separated by 13 nucleotides MPMX19_02881 and MPMX19_02882 are separated by 109 nucleotides MPMX19_02882 and MPMX19_02883 are separated by 13 nucleotides MPMX19_02883 and MPMX19_02884 are separated by 1 nucleotides
MPMX19_02880: MPMX19_02880 - hypothetical protein, at 130,552 to 131,658
_02880
MPMX19_02881: MPMX19_02881 - hypothetical protein, at 131,672 to 132,157
_02881
MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157
_02882
MPMX19_02883: MPMX19_02883 - hypothetical protein, at 133,171 to 133,500
_02883
MPMX19_02884: MPMX19_02884 - hypothetical protein, at 133,502 to 134,845
_02884
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.638 kb on + strand at 131.673 kb on + strand at 131.778 kb on + strand, within MPMX19_02881 at 131.778 kb on + strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 132.200 kb on + strand at 132.227 kb on + strand at 132.227 kb on + strand at 132.228 kb on - strand at 132.228 kb on - strand at 132.250 kb on + strand at 132.250 kb on + strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.266 kb on + strand at 132.266 kb on + strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.517 kb on - strand, within MPMX19_02882 at 132.553 kb on - strand, within MPMX19_02882 at 132.741 kb on + strand, within MPMX19_02882 at 132.741 kb on + strand, within MPMX19_02882 at 132.741 kb on + strand, within MPMX19_02882 at 132.742 kb on - strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.776 kb on + strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.954 kb on + strand, within MPMX19_02882 at 132.954 kb on + strand, within MPMX19_02882 at 132.955 kb on - strand, within MPMX19_02882 at 132.955 kb on - strand, within MPMX19_02882 at 133.155 kb on + strand at 133.172 kb on + strand at 133.172 kb on + strand at 133.172 kb on + strand at 133.172 kb on + strand at 133.172 kb on + strand at 133.173 kb on - strand at 133.173 kb on - strand at 133.173 kb on - strand at 133.173 kb on - strand at 133.412 kb on + strand, within MPMX19_02883 at 133.514 kb on - strand at 133.623 kb on + strand at 133.623 kb on + strand at 133.624 kb on - strand at 133.624 kb on - strand at 133.704 kb on + strand, within MPMX19_02884 at 133.704 kb on + strand, within MPMX19_02884 at 133.704 kb on + strand, within MPMX19_02884 at 133.704 kb on + strand, within MPMX19_02884 at 133.705 kb on - strand, within MPMX19_02884 at 133.705 kb on - strand, within MPMX19_02884 at 133.705 kb on - strand, within MPMX19_02884 at 133.705 kb on - strand, within MPMX19_02884 at 133.705 kb on - strand, within MPMX19_02884 at 133.705 kb on - strand, within MPMX19_02884 at 133.866 kb on + strand, within MPMX19_02884 at 133.866 kb on + strand, within MPMX19_02884 at 133.866 kb on + strand, within MPMX19_02884 at 133.866 kb on + strand, within MPMX19_02884 at 133.866 kb on + strand, within MPMX19_02884 at 133.867 kb on - strand, within MPMX19_02884 at 133.867 kb on - strand, within MPMX19_02884 at 133.867 kb on - strand, within MPMX19_02884 at 133.867 kb on - strand, within MPMX19_02884 at 133.867 kb on - strand, within MPMX19_02884 at 133.902 kb on + strand, within MPMX19_02884 at 133.903 kb on - strand, within MPMX19_02884 at 133.903 kb on - strand, within MPMX19_02884 at 134.028 kb on + strand, within MPMX19_02884 at 134.028 kb on + strand, within MPMX19_02884 at 134.053 kb on - strand, within MPMX19_02884 at 134.053 kb on - strand, within MPMX19_02884
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 131,638 + -0.9 131,673 + -0.4 131,778 + MPMX19_02881 0.22 -1.4 131,778 + MPMX19_02881 0.22 +0.9 131,779 - MPMX19_02881 0.22 -0.7 131,779 - MPMX19_02881 0.22 -0.4 131,779 - MPMX19_02881 0.22 +0.1 131,838 + MPMX19_02881 0.34 -0.8 131,838 + MPMX19_02881 0.34 +0.1 131,838 + MPMX19_02881 0.34 -0.9 131,838 + MPMX19_02881 0.34 +0.2 131,839 - MPMX19_02881 0.34 -1.7 131,839 - MPMX19_02881 0.34 -0.9 131,839 - MPMX19_02881 0.34 -0.5 131,839 - MPMX19_02881 0.34 +0.3 131,839 - MPMX19_02881 0.34 -0.5 131,839 - MPMX19_02881 0.34 -0.7 131,839 - MPMX19_02881 0.34 -0.7 132,200 + +2.4 132,227 + +0.2 132,227 + +0.7 132,228 - -0.3 132,228 - +1.5 132,250 + -1.4 132,250 + -2.2 132,251 - -1.2 132,251 - -1.6 132,251 - +0.2 132,266 + -0.8 132,266 + +0.3 132,267 - -0.9 132,267 - -1.3 132,267 - -1.1 132,360 + MPMX19_02882 0.10 -0.8 132,360 + MPMX19_02882 0.10 +0.1 132,360 + MPMX19_02882 0.10 +1.6 132,360 + MPMX19_02882 0.10 -2.1 132,360 + MPMX19_02882 0.10 -1.8 132,360 + MPMX19_02882 0.10 +0.8 132,360 + MPMX19_02882 0.10 -1.9 132,361 - MPMX19_02882 0.11 +0.4 132,361 - MPMX19_02882 0.11 -1.2 132,361 - MPMX19_02882 0.11 +1.1 132,516 + MPMX19_02882 0.28 -1.8 132,516 + MPMX19_02882 0.28 +1.3 132,516 + MPMX19_02882 0.28 -0.9 132,516 + MPMX19_02882 0.28 -0.2 132,516 + MPMX19_02882 0.28 +1.3 132,517 - MPMX19_02882 0.28 +0.2 132,553 - MPMX19_02882 0.32 -0.6 132,741 + MPMX19_02882 0.53 +0.4 132,741 + MPMX19_02882 0.53 -0.7 132,741 + MPMX19_02882 0.53 -0.7 132,742 - MPMX19_02882 0.53 +0.9 132,774 + MPMX19_02882 0.57 +0.2 132,774 + MPMX19_02882 0.57 -0.5 132,774 + MPMX19_02882 0.57 +0.0 132,774 + MPMX19_02882 0.57 +0.1 132,774 + MPMX19_02882 0.57 -0.3 132,774 + MPMX19_02882 0.57 -1.7 132,774 + MPMX19_02882 0.57 +0.1 132,774 + MPMX19_02882 0.57 -1.2 132,774 + MPMX19_02882 0.57 -1.9 132,775 - MPMX19_02882 0.57 -1.4 132,775 - MPMX19_02882 0.57 -0.9 132,775 - MPMX19_02882 0.57 -1.4 132,775 - MPMX19_02882 0.57 -0.9 132,775 - MPMX19_02882 0.57 +0.4 132,775 - MPMX19_02882 0.57 +0.8 132,775 - MPMX19_02882 0.57 -0.4 132,775 - MPMX19_02882 0.57 -0.1 132,775 - MPMX19_02882 0.57 +0.6 132,775 - MPMX19_02882 0.57 -0.8 132,775 - MPMX19_02882 0.57 -0.8 132,776 + MPMX19_02882 0.57 +0.5 132,777 - MPMX19_02882 0.57 +0.1 132,777 - MPMX19_02882 0.57 -0.4 132,777 - MPMX19_02882 0.57 -0.3 132,777 - MPMX19_02882 0.57 +0.6 132,954 + MPMX19_02882 0.77 -1.8 132,954 + MPMX19_02882 0.77 +0.5 132,955 - MPMX19_02882 0.77 +0.1 132,955 - MPMX19_02882 0.77 -0.6 133,155 + +0.6 133,172 + -0.4 133,172 + -0.7 133,172 + -0.7 133,172 + -0.2 133,172 + -0.7 133,173 - +0.5 133,173 - -0.2 133,173 - -1.4 133,173 - +1.6 133,412 + MPMX19_02883 0.73 +0.1 133,514 - -0.7 133,623 + -0.5 133,623 + -1.7 133,624 - +0.4 133,624 - +0.6 133,704 + MPMX19_02884 0.15 +0.1 133,704 + MPMX19_02884 0.15 -1.3 133,704 + MPMX19_02884 0.15 -0.1 133,704 + MPMX19_02884 0.15 -1.5 133,705 - MPMX19_02884 0.15 -0.2 133,705 - MPMX19_02884 0.15 -0.6 133,705 - MPMX19_02884 0.15 +1.5 133,705 - MPMX19_02884 0.15 +0.2 133,705 - MPMX19_02884 0.15 -1.1 133,705 - MPMX19_02884 0.15 +1.3 133,866 + MPMX19_02884 0.27 -0.4 133,866 + MPMX19_02884 0.27 +1.1 133,866 + MPMX19_02884 0.27 -0.9 133,866 + MPMX19_02884 0.27 +0.6 133,866 + MPMX19_02884 0.27 +0.8 133,867 - MPMX19_02884 0.27 +0.4 133,867 - MPMX19_02884 0.27 -0.8 133,867 - MPMX19_02884 0.27 -0.1 133,867 - MPMX19_02884 0.27 +0.6 133,867 - MPMX19_02884 0.27 -0.2 133,902 + MPMX19_02884 0.30 +0.3 133,903 - MPMX19_02884 0.30 +0.9 133,903 - MPMX19_02884 0.30 +0.1 134,028 + MPMX19_02884 0.39 -0.8 134,028 + MPMX19_02884 0.39 +1.0 134,053 - MPMX19_02884 0.41 -1.4 134,053 - MPMX19_02884 0.41 -1.3
Or see this region's nucleotide sequence