Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00574 and MPMX19_00575 are separated by 216 nucleotides MPMX19_00575 and MPMX19_00576 are separated by 214 nucleotides MPMX19_00576 and MPMX19_00577 are separated by 179 nucleotides
MPMX19_00574: MPMX19_00574 - hypothetical protein, at 588,595 to 589,440
_00574
MPMX19_00575: MPMX19_00575 - 4-hydroxybenzoate octaprenyltransferase, at 589,657 to 590,604
_00575
MPMX19_00576: MPMX19_00576 - hypothetical protein, at 590,819 to 591,208
_00576
MPMX19_00577: MPMX19_00577 - Ribosomal RNA small subunit methyltransferase E, at 591,388 to 592,167
_00577
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 588.657 kb on + strand at 588.728 kb on + strand, within MPMX19_00574 at 588.728 kb on + strand, within MPMX19_00574 at 588.728 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.772 kb on + strand, within MPMX19_00574 at 588.773 kb on - strand, within MPMX19_00574 at 588.773 kb on - strand, within MPMX19_00574 at 588.773 kb on - strand, within MPMX19_00574 at 588.773 kb on - strand, within MPMX19_00574 at 588.773 kb on - strand, within MPMX19_00574 at 589.018 kb on + strand, within MPMX19_00574 at 589.018 kb on + strand, within MPMX19_00574 at 589.018 kb on + strand, within MPMX19_00574 at 589.028 kb on - strand, within MPMX19_00574 at 589.447 kb on + strand at 589.447 kb on + strand at 589.447 kb on + strand at 589.447 kb on + strand at 589.447 kb on + strand at 589.447 kb on + strand at 589.447 kb on + strand at 589.557 kb on + strand at 589.557 kb on + strand at 589.557 kb on + strand at 589.558 kb on - strand at 589.558 kb on - strand at 589.558 kb on - strand at 589.558 kb on - strand at 589.558 kb on - strand at 589.558 kb on - strand at 589.558 kb on - strand at 589.618 kb on + strand at 589.659 kb on - strand at 590.510 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.675 kb on - strand at 590.675 kb on - strand at 590.675 kb on - strand at 590.675 kb on - strand at 590.730 kb on + strand at 590.731 kb on - strand at 590.778 kb on + strand at 590.778 kb on + strand at 590.778 kb on + strand at 590.779 kb on - strand at 590.794 kb on + strand at 590.794 kb on + strand at 590.794 kb on + strand at 590.794 kb on + strand at 590.795 kb on - strand at 590.795 kb on - strand at 590.915 kb on + strand, within MPMX19_00576 at 590.916 kb on - strand, within MPMX19_00576 at 590.916 kb on - strand, within MPMX19_00576 at 590.999 kb on + strand, within MPMX19_00576 at 591.139 kb on + strand, within MPMX19_00576 at 591.139 kb on + strand, within MPMX19_00576 at 591.139 kb on + strand, within MPMX19_00576 at 591.140 kb on - strand, within MPMX19_00576 at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 588,657 + -0.5 588,728 + MPMX19_00574 0.16 -1.1 588,728 + MPMX19_00574 0.16 -1.8 588,728 + MPMX19_00574 0.16 -0.5 588,772 + MPMX19_00574 0.21 -0.2 588,772 + MPMX19_00574 0.21 +0.0 588,772 + MPMX19_00574 0.21 -0.9 588,772 + MPMX19_00574 0.21 -0.6 588,772 + MPMX19_00574 0.21 -1.6 588,773 - MPMX19_00574 0.21 +1.0 588,773 - MPMX19_00574 0.21 +0.6 588,773 - MPMX19_00574 0.21 -0.3 588,773 - MPMX19_00574 0.21 -2.3 588,773 - MPMX19_00574 0.21 +0.5 589,018 + MPMX19_00574 0.50 -0.7 589,018 + MPMX19_00574 0.50 +0.2 589,018 + MPMX19_00574 0.50 +0.6 589,028 - MPMX19_00574 0.51 -0.7 589,447 + +0.1 589,447 + +0.0 589,447 + -0.2 589,447 + -1.3 589,447 + -1.2 589,447 + -0.4 589,447 + -0.2 589,557 + -1.6 589,557 + -1.3 589,557 + -1.3 589,558 - -0.5 589,558 - +0.1 589,558 - -0.8 589,558 - +0.0 589,558 - -1.0 589,558 - -0.2 589,558 - +0.9 589,618 + -1.4 589,659 - -0.4 590,510 - +1.0 590,628 - -2.5 590,628 - -0.4 590,628 - -1.0 590,628 - -0.4 590,628 - -0.7 590,628 - -2.4 590,628 - -0.9 590,628 - +0.0 590,628 - -0.6 590,628 - -2.0 590,628 - +0.9 590,628 - +0.2 590,675 - -0.2 590,675 - +0.2 590,675 - -0.0 590,675 - -0.7 590,730 + -0.4 590,731 - +0.2 590,778 + -1.9 590,778 + -1.6 590,778 + -0.4 590,779 - +0.8 590,794 + +0.5 590,794 + -1.0 590,794 + +0.9 590,794 + -0.7 590,795 - -1.0 590,795 - -0.6 590,915 + MPMX19_00576 0.25 -0.7 590,916 - MPMX19_00576 0.25 +0.0 590,916 - MPMX19_00576 0.25 -1.2 590,999 + MPMX19_00576 0.46 +1.0 591,139 + MPMX19_00576 0.82 -1.4 591,139 + MPMX19_00576 0.82 -0.3 591,139 + MPMX19_00576 0.82 +1.6 591,140 - MPMX19_00576 0.82 -0.2 591,270 + -2.9 591,270 + -0.8 591,270 + +0.2 591,270 + -0.4 591,271 - +1.6 591,271 - -0.9 591,271 - +0.6 591,300 + +1.6 591,300 + -0.2 591,300 + -0.2 591,300 + +0.7 591,300 + -0.5 591,301 - -1.8 591,301 - -0.7 591,301 - -0.3 591,301 - -1.2 591,301 - +0.1 591,301 - -0.3 591,301 - -0.8 591,355 + -1.1 591,355 + -0.8 591,355 + +0.2 591,355 + +1.0 591,355 + +0.3 591,355 + -2.0 591,355 + -0.4 591,355 + -0.2 591,355 + -0.9 591,355 + -0.1 591,355 + +0.2 591,355 + -2.0 591,355 + -1.4 591,355 + -0.0 591,355 + -0.2 591,355 + -1.8 591,355 + +0.3 591,356 - -0.4 591,356 - +0.7 591,356 - -1.0 591,356 - +1.1 591,356 - -0.8 591,356 - -0.2 591,356 - +0.6 591,356 - -1.5 591,356 - +0.6 591,356 - -0.8 591,356 - -1.2 591,356 - -2.6 591,356 - -2.0 591,357 + -1.2 591,357 + -0.2 591,357 + +0.6 591,357 + +0.6 591,357 + +0.6 591,357 + -0.7 591,357 + -1.2 591,357 + -1.2 591,357 + -0.2 591,357 + -0.2 591,357 + +1.0 591,357 + -0.5 591,357 + +0.4 591,357 + -1.0 591,358 - +0.8 591,358 - +0.1 591,358 - -0.5 591,358 - -0.8 591,358 - +0.5 591,358 - +0.4 591,358 - -0.4 591,358 - +0.8 591,358 - +0.0 591,358 - -0.5 591,358 - +1.6 591,358 - -1.7 591,358 - -0.1 591,358 - -1.1 591,415 + -1.5 591,415 + -1.5 591,415 + -0.4 591,415 + -0.7 591,415 + +0.2 591,415 + -0.7 591,415 + +0.4 591,415 + +0.2 591,415 + -0.8 591,415 + -0.8 591,415 + -0.5 591,416 - -1.0 591,416 - +0.2 591,416 - -0.6 591,416 - -0.2 591,416 - +0.2 591,416 - +0.0 591,416 - +1.2 591,416 - +0.5 591,416 - +0.3 591,416 - -1.7 591,416 - +0.0 591,416 - -0.8
Or see this region's nucleotide sequence