Strain Fitness in Sphingobium sp. HT1-2 around GFF5261

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,250,761	-		GFF5259	0.66	+0.0
5,250,780	+		GFF5259	0.70	-1.1
5,250,780	+		GFF5259	0.70	+0.1
5,250,788	-		GFF5259	0.71	-0.6
5,250,795	+		GFF5259	0.73	-0.4
5,250,799	+		GFF5259	0.73	-0.5
5,250,803	-		GFF5259	0.74	+0.0
5,250,826	-		GFF5259	0.78	-1.5
5,250,834	-		GFF5259	0.80	+0.4
5,250,912	+				-0.8
5,250,924	+				+0.6
5,250,924	+				+1.2
5,250,924	+				+0.2
5,250,924	+				-0.6
5,250,924	+				-0.8
5,250,930	-				-0.7
5,250,932	-				-0.5
5,250,932	-				-0.9
5,250,932	-				-0.8
5,250,932	-				+0.3
5,250,932	-				-1.2
5,250,932	-				+0.2
5,250,956	+				-0.3
5,250,956	+				-0.3
5,251,040	+		GFF5260	0.16	-1.2
5,251,171	-		GFF5260	0.36	-0.3
5,251,576	+				+0.5
5,251,588	+				+0.3
5,251,594	-				-0.7
5,251,604	-				+0.1
5,251,604	-				+0.1
5,251,604	-				-0.6
5,251,645	-				-0.7
5,251,645	-				-0.5
5,251,654	-				+0.2
5,251,690	+				-0.0
5,251,717	-				-0.0
5,251,719	+				+0.2
5,251,719	-				-0.6
5,251,745	-		GFF5261	0.12	+0.2
5,251,790	-		GFF5261	0.29	-0.2
5,251,798	+		GFF5261	0.32	-1.2
5,251,798	+		GFF5261	0.32	-1.2
5,251,810	+		GFF5261	0.37	+0.5
5,251,810	+		GFF5261	0.37	+0.8
5,251,810	+		GFF5261	0.37	-2.5
5,251,810	+		GFF5261	0.37	-0.2
5,251,810	+		GFF5261	0.37	-0.6
5,251,817	+		GFF5261	0.39	-2.0
5,251,818	-		GFF5261	0.40	+0.4
5,251,818	-		GFF5261	0.40	-0.9
5,251,818	-		GFF5261	0.40	-0.6
5,251,818	-		GFF5261	0.40	+0.8
5,251,825	+		GFF5261	0.42	+0.3
5,251,825	+		GFF5261	0.42	-0.0
5,251,832	+		GFF5261	0.45	-0.5
5,251,833	-		GFF5261	0.45	+0.4
5,251,833	-		GFF5261	0.45	-0.5
5,251,833	-		GFF5261	0.45	-2.2
5,251,833	-		GFF5261	0.45	-0.8
5,251,843	-		GFF5261	0.49	-1.4
5,251,849	+		GFF5261	0.51	-0.3
5,251,857	-		GFF5261	0.54	-1.0
5,251,857	-		GFF5261	0.54	+0.9
5,251,869	-		GFF5261	0.59	-0.5
5,251,889	+		GFF5261	0.66	-1.7
5,251,889	+		GFF5261	0.66	-1.8
5,251,889	+		GFF5261	0.66	-0.2
5,251,889	+		GFF5261	0.66	+0.5
5,251,889	+		GFF5261	0.66	-1.7
5,251,897	-		GFF5261	0.69	-0.3
5,251,897	-		GFF5261	0.69	-1.2
5,251,897	-		GFF5261	0.69	-0.3
5,251,897	-		GFF5261	0.69	-0.3
5,251,907	+		GFF5261	0.73	-1.0
5,251,907	+		GFF5261	0.73	-0.4
5,251,913	+		GFF5261	0.75	-0.3
5,251,913	+		GFF5261	0.75	+0.5
5,251,915	-		GFF5261	0.76	+0.7
5,251,915	-		GFF5261	0.76	-0.6
5,251,915	-		GFF5261	0.76	-1.6
5,251,915	-		GFF5261	0.76	+0.8
5,251,915	-		GFF5261	0.76	+0.1
5,251,915	-		GFF5261	0.76	-0.9
5,251,915	-		GFF5261	0.76	-0.3
5,251,915	-		GFF5261	0.76	-1.9
5,251,947	-		GFF5261	0.88	-1.6
5,251,949	+		GFF5261	0.89	+0.9
5,251,949	+		GFF5261	0.89	+0.1
5,251,957	-				-1.1
5,251,957	-				+0.6
5,251,980	+				-1.0
5,251,991	-				-0.2
5,251,995	+				-1.7
5,251,995	+				+0.0
5,251,995	+				+1.3
5,251,995	+				-0.9
5,251,995	+				+0.1
5,251,995	+				-0.2
5,252,000	-				+0.2
5,252,003	-				-2.3
5,252,003	-				-0.0
5,252,003	-				-0.7
5,252,005	+				-0.0
5,252,005	+				+0.0
5,252,008	-				-1.5
5,252,013	-				-1.8
5,252,013	-				-0.8
5,252,015	+				+1.0
5,252,015	+				+0.1
5,252,015	+				-1.0
5,252,015	+				-0.4
5,252,015	+				+0.6
5,252,015	+				-2.3
5,252,015	+				-0.1
5,252,018	-				-0.4
5,252,023	-				-1.7
5,252,023	-				-2.8
5,252,023	-				-0.8
5,252,026	+				+0.2
5,252,034	-				+0.1
5,252,065	+				-0.2
5,252,065	+				+0.1
5,252,065	+				-0.6
5,252,065	+				-1.5
5,252,065	+				+0.8
5,252,073	-				-0.3
5,252,073	-				-3.3
5,252,073	-				-1.0
5,252,073	-				-0.5
5,252,073	-				-1.2
5,252,073	-				-0.1
5,252,073	-				-0.5
5,252,075	+				+0.6
5,252,084	+				+0.1
5,252,084	+				+0.1
5,252,092	-				-0.3
5,252,092	-				-0.3
5,252,105	+				-0.5
5,252,115	-				-0.1
5,252,115	-				-0.4
5,252,172	+		GFF5262	0.16	-0.3
5,252,206	-		GFF5262	0.20	-0.1
5,252,220	+		GFF5262	0.22	-1.1
5,252,228	-		GFF5262	0.23	-0.7
5,252,231	-		GFF5262	0.23	+0.7
5,252,232	+		GFF5262	0.23	+0.8
5,252,240	-		GFF5262	0.24	+0.4
5,252,264	-		GFF5262	0.27	-2.8
5,252,288	+		GFF5262	0.30	+0.3
5,252,304	+		GFF5262	0.32	+1.3
5,252,304	+		GFF5262	0.32	-0.8
5,252,305	-		GFF5262	0.32	-0.9
5,252,307	+		GFF5262	0.32	-1.5
5,252,309	+		GFF5262	0.32	-0.6
5,252,309	+		GFF5262	0.32	+0.1
5,252,309	+		GFF5262	0.32	-0.3
5,252,309	+		GFF5262	0.32	+0.6
5,252,315	-		GFF5262	0.33	-0.2
5,252,317	-		GFF5262	0.33	+0.7
5,252,322	+		GFF5262	0.34	-1.8
5,252,324	+		GFF5262	0.34	-1.8
5,252,327	+		GFF5262	0.35	-0.2
5,252,330	-		GFF5262	0.35	-0.1
5,252,330	-		GFF5262	0.35	-0.1
5,252,330	-		GFF5262	0.35	-0.3
5,252,343	+		GFF5262	0.36	+0.3
5,252,348	+		GFF5262	0.37	+0.3
5,252,348	+		GFF5262	0.37	+0.2
5,252,348	+		GFF5262	0.37	-0.1
5,252,354	-		GFF5262	0.38	-0.1
5,252,356	-		GFF5262	0.38	-0.1
5,252,356	-		GFF5262	0.38	-0.0
5,252,364	+		GFF5262	0.39	-0.2
5,252,370	+		GFF5262	0.40	-0.2
5,252,370	+		GFF5262	0.40	-0.5
5,252,370	+		GFF5262	0.40	-1.7
5,252,370	+		GFF5262	0.40	-0.1
5,252,372	-		GFF5262	0.40	-0.4
5,252,375	+		GFF5262	0.40	+0.1
5,252,375	+		GFF5262	0.40	-2.0
5,252,375	+		GFF5262	0.40	-0.9
5,252,375	+		GFF5262	0.40	+0.2
5,252,375	+		GFF5262	0.40	-1.2
5,252,375	+		GFF5262	0.40	-2.1
5,252,375	+		GFF5262	0.40	-0.7
5,252,375	+		GFF5262	0.40	+0.0
5,252,375	+		GFF5262	0.40	-1.6
5,252,375	+		GFF5262	0.40	-1.3
5,252,377	-		GFF5262	0.41	-0.3
5,252,378	-		GFF5262	0.41	-1.0
5,252,378	-		GFF5262	0.41	-0.2
5,252,383	-		GFF5262	0.41	-0.3
5,252,383	-		GFF5262	0.41	-0.8
5,252,383	-		GFF5262	0.41	-0.6
5,252,383	-		GFF5262	0.41	-0.5
5,252,383	-		GFF5262	0.41	-1.5
5,252,383	-		GFF5262	0.41	-0.5
5,252,391	+		GFF5262	0.42	+0.9
5,252,391	+		GFF5262	0.42	+0.4
5,252,399	-		GFF5262	0.43	-0.1
5,252,399	-		GFF5262	0.43	-0.0
5,252,399	-		GFF5262	0.43	-0.8
5,252,399	-		GFF5262	0.43	-1.2
5,252,412	+		GFF5262	0.45	+0.2
5,252,413	+		GFF5262	0.45	-0.3
5,252,419	+		GFF5262	0.46	-0.3
5,252,441	-		GFF5262	0.48	-2.2
5,252,441	-		GFF5262	0.48	-1.3
5,252,441	-		GFF5262	0.48	-0.1
5,252,462	+		GFF5262	0.51	+0.3
5,252,471	-		GFF5262	0.52	+1.1
5,252,521	+		GFF5262	0.58	+0.4
5,252,568	+		GFF5262	0.64	-0.6
5,252,568	+		GFF5262	0.64	-2.3
5,252,568	+		GFF5262	0.64	-0.3
5,252,568	+		GFF5262	0.64	-0.3
5,252,568	+		GFF5262	0.64	+0.1
5,252,568	+		GFF5262	0.64	+0.8
5,252,576	-		GFF5262	0.65	+0.3
5,252,576	-		GFF5262	0.65	-0.4
5,252,576	-		GFF5262	0.65	-0.0
5,252,592	-		GFF5262	0.66	-1.2
5,252,620	-		GFF5262	0.70	+0.7
5,252,620	-		GFF5262	0.70	-0.8
5,252,625	+		GFF5262	0.70	-0.4
5,252,625	+		GFF5262	0.70	-0.4
5,252,630	-		GFF5262	0.71	-0.7
5,252,652	-		GFF5262	0.74	-1.0
5,252,655	+		GFF5262	0.74	+1.1
5,252,659	+		GFF5262	0.74	-2.0
5,252,659	+		GFF5262	0.74	-1.7
5,252,659	+		GFF5262	0.74	-0.8
5,252,663	+		GFF5262	0.75	+0.2
5,252,669	+		GFF5262	0.76	-1.2
5,252,670	+		GFF5262	0.76	-1.7
5,252,671	-		GFF5262	0.76	+0.4
5,252,671	-		GFF5262	0.76	-0.8
5,252,673	-		GFF5262	0.76	-0.5
5,252,684	+		GFF5262	0.77	-0.9
5,252,702	+		GFF5262	0.80	+0.2
5,252,710	-		GFF5262	0.81	-1.4
5,252,710	-		GFF5262	0.81	+0.1
5,252,714	-		GFF5262	0.81	-0.7
5,252,716	-		GFF5262	0.81	+0.1
5,252,716	-		GFF5262	0.81	-1.5
5,252,716	-		GFF5262	0.81	-1.8
5,252,727	+		GFF5262	0.83	-0.6
5,252,744	+		GFF5262	0.85	-0.8
5,252,750	+		GFF5262	0.85	-0.1
5,252,752	-		GFF5262	0.86	-0.6
5,252,759	+		GFF5262	0.87	-0.0
5,252,790	+				+0.1
5,252,798	-				-1.4
5,252,800	+				-1.5
5,252,815	-				+0.1
5,252,848	+				-0.5
5,252,859	-				+0.5
5,252,865	+				+1.0
5,252,902	-				+1.3
5,252,904	+				-0.1
5,252,912	+				-1.3
5,252,918	+				-1.9
5,252,930	+				-1.3
5,252,946	-		GFF5263	0.11	-1.1
5,252,946	-		GFF5263	0.11	+0.7
5,252,946	-		GFF5263	0.11	-0.6
5,252,949	+		GFF5263	0.11	-1.0
5,252,949	-		GFF5263	0.11	+1.3
5,252,956	+		GFF5263	0.12	-0.1
5,252,960	+		GFF5263	0.12	-0.8
5,252,960	+		GFF5263	0.12	-0.0
5,252,969	-		GFF5263	0.14	-1.6