Strain Fitness in Sphingobium sp. HT1-2 around GFF4714

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,714,640	-		GFF4713	0.62	+0.5
4,714,644	+		GFF4713	0.62	-0.0
4,714,650	-		GFF4713	0.63	+0.3
4,714,650	-		GFF4713	0.63	-0.7
4,714,650	-		GFF4713	0.63	-1.4
4,714,676	+		GFF4713	0.64	-0.2
4,714,684	-		GFF4713	0.64	+0.8
4,714,684	-		GFF4713	0.64	+0.0
4,714,684	-		GFF4713	0.64	-0.4
4,714,693	+		GFF4713	0.64	-0.5
4,714,694	+		GFF4713	0.64	-2.0
4,714,701	-		GFF4713	0.65	+0.9
4,714,715	-		GFF4713	0.65	+0.5
4,714,731	-		GFF4713	0.66	+0.1
4,714,739	+		GFF4713	0.66	-0.9
4,714,747	-		GFF4713	0.66	-0.4
4,714,747	-		GFF4713	0.66	+0.3
4,714,747	-		GFF4713	0.66	-1.3
4,714,747	-		GFF4713	0.66	-0.6
4,714,793	+		GFF4713	0.68	-0.4
4,714,794	-		GFF4713	0.68	-1.4
4,714,799	-		GFF4713	0.69	+0.1
4,714,799	-		GFF4713	0.69	-0.6
4,714,813	+		GFF4713	0.69	-0.4
4,714,826	-		GFF4713	0.70	+0.2
4,714,828	-		GFF4713	0.70	+0.2
4,714,831	-		GFF4713	0.70	-0.3
4,714,854	-		GFF4713	0.71	-1.7
4,714,860	+		GFF4713	0.71	-0.1
4,714,863	-		GFF4713	0.71	-0.1
4,714,864	-		GFF4713	0.71	+0.5
4,714,873	-		GFF4713	0.71	-0.4
4,714,893	-		GFF4713	0.72	-2.0
4,714,939	-		GFF4713	0.74	+0.7
4,714,979	-		GFF4713	0.76	-0.3
4,714,984	+		GFF4713	0.76	-2.1
4,714,987	-		GFF4713	0.76	+0.9
4,714,997	-		GFF4713	0.76	-0.2
4,715,004	-		GFF4713	0.77	-1.9
4,715,007	-		GFF4713	0.77	+0.4
4,715,012	+		GFF4713	0.77	+0.3
4,715,043	-		GFF4713	0.78	+1.0
4,715,045	+		GFF4713	0.78	-0.5
4,715,092	-		GFF4713	0.80	+1.9
4,715,094	+		GFF4713	0.80	+1.4
4,715,097	-		GFF4713	0.80	-1.5
4,715,124	+		GFF4713	0.82	-0.1
4,715,132	-		GFF4713	0.82	+1.2
4,715,142	+		GFF4713	0.82	+0.6
4,715,142	+		GFF4713	0.82	+0.2
4,715,144	+		GFF4713	0.82	-1.5
4,715,144	+		GFF4713	0.82	+0.6
4,715,150	-		GFF4713	0.83	+1.3
4,715,151	+		GFF4713	0.83	+1.0
4,715,189	+		GFF4713	0.84	-0.3
4,715,193	+		GFF4713	0.84	+1.2
4,715,193	+		GFF4713	0.84	-2.0
4,715,193	+		GFF4713	0.84	+1.0
4,715,193	+		GFF4713	0.84	+1.4
4,715,193	+		GFF4713	0.84	+1.5
4,715,193	+		GFF4713	0.84	-0.6
4,715,193	+		GFF4713	0.84	+1.0
4,715,193	+		GFF4713	0.84	+0.7
4,715,193	+		GFF4713	0.84	-0.1
4,715,193	+		GFF4713	0.84	-2.1
4,715,193	+		GFF4713	0.84	+0.5
4,715,193	+		GFF4713	0.84	+0.1
4,715,193	+		GFF4713	0.84	-0.5
4,715,193	+		GFF4713	0.84	+1.3
4,715,193	+		GFF4713	0.84	+0.9
4,715,193	+		GFF4713	0.84	+0.0
4,715,193	+		GFF4713	0.84	+0.0
4,715,193	+		GFF4713	0.84	-1.8
4,715,194	+		GFF4713	0.84	-1.8
4,715,194	+		GFF4713	0.84	+0.0
4,715,200	+		GFF4713	0.85	+0.7
4,715,201	-		GFF4713	0.85	+0.8
4,715,201	-		GFF4713	0.85	-1.0
4,715,201	-		GFF4713	0.85	+0.6
4,715,201	-		GFF4713	0.85	-1.0
4,715,201	-		GFF4713	0.85	-0.1
4,715,201	-		GFF4713	0.85	+0.7
4,715,201	-		GFF4713	0.85	+0.4
4,715,201	-		GFF4713	0.85	+1.0
4,715,201	-		GFF4713	0.85	-0.4
4,715,201	-		GFF4713	0.85	+1.2
4,715,201	-		GFF4713	0.85	+0.0
4,715,201	-		GFF4713	0.85	+1.0
4,715,202	-		GFF4713	0.85	+0.6
4,715,204	+		GFF4713	0.85	+1.0
4,715,218	-		GFF4713	0.85	-0.3
4,715,221	+		GFF4713	0.85	+0.6
4,715,229	+		GFF4713	0.86	-0.5
4,715,245	+		GFF4713	0.86	-0.3
4,715,247	-		GFF4713	0.87	-0.0
4,715,255	+		GFF4713	0.87	+1.6
4,715,268	+		GFF4713	0.87	+1.2
4,715,268	+		GFF4713	0.87	+0.5
4,715,269	-		GFF4713	0.87	+1.1
4,715,269	-		GFF4713	0.87	+0.2
4,715,269	-		GFF4713	0.87	-0.1
4,715,269	-		GFF4713	0.87	+0.7
4,715,276	-		GFF4713	0.88	-1.8
4,715,286	-		GFF4713	0.88	-0.5
4,715,297	+		GFF4713	0.89	-0.4
4,715,297	+		GFF4713	0.89	-1.9
4,715,305	-		GFF4713	0.89	-0.1
4,715,305	-		GFF4713	0.89	+0.4
4,715,308	+		GFF4713	0.89	-0.6
4,715,308	+		GFF4713	0.89	+1.2
4,715,330	+		GFF4713	0.90	-0.8
4,715,333	+		GFF4713	0.90	-1.7
4,715,338	-				+0.0
4,715,338	-				+1.4
4,715,344	+				+1.0
4,715,352	-				+0.7
4,715,375	+				+0.1
4,715,383	-				+0.2
4,715,397	+				+1.1
4,715,398	+				-0.0
4,715,406	-				+1.2
4,715,406	-				-0.2
4,715,410	+				+0.9
4,715,410	+				-1.3
4,715,410	+				+1.7
4,715,412	+				-1.8
4,715,418	-				+0.0
4,715,418	-				+0.2
4,715,420	-				+0.2
4,715,434	+				+0.2
4,715,434	+				-1.9
4,715,434	+				+0.0
4,715,434	+				+0.2
4,715,434	+				+0.5
4,715,442	-				-0.0
4,715,442	-				+0.9
4,715,442	-				+0.2
4,715,453	-				-1.2
4,715,458	+				+0.8
4,715,468	+				+0.1
4,715,492	+				+0.6
4,715,519	+				-0.6
4,715,519	+				+0.5
4,715,538	+				-0.7
4,715,543	+				-1.4
4,715,544	-				+0.2
4,715,562	+				-0.3
4,715,562	+				+0.9
4,715,570	-				-0.7
4,715,570	-				+0.3
4,715,570	-				-0.2
4,715,570	-				+0.4
4,715,625	-				+0.4
4,715,654	-				+0.8
4,715,656	+				-0.5
4,715,664	-				+0.4
4,715,666	+				-0.4
4,715,673	+				+0.4
4,715,673	-				-0.2
4,715,674	-				+1.0
4,715,710	-				+0.6
4,715,722	+				+0.0
4,715,769	+				-0.7
4,715,777	+				-1.8
4,715,804	-		GFF4714	0.10	+0.4
4,715,810	+		GFF4714	0.11	+0.6
4,715,817	+		GFF4714	0.11	-1.8
4,715,817	+		GFF4714	0.11	-0.3
4,715,817	+		GFF4714	0.11	+0.1
4,715,817	+		GFF4714	0.11	+0.1
4,715,817	+		GFF4714	0.11	-0.3
4,715,817	+		GFF4714	0.11	+1.3
4,715,817	+		GFF4714	0.11	+0.0
4,715,825	-		GFF4714	0.11	-0.6
4,715,825	-		GFF4714	0.11	+1.1
4,715,828	+		GFF4714	0.12	-1.6
4,715,842	+		GFF4714	0.12	-0.4
4,715,850	-		GFF4714	0.13	+0.1
4,715,863	+		GFF4714	0.14	-1.0
4,715,885	-		GFF4714	0.15	-1.4
4,715,925	-		GFF4714	0.17	+0.8
4,715,929	-		GFF4714	0.17	-1.1
4,715,936	+		GFF4714	0.18	-0.9
4,715,936	+		GFF4714	0.18	-0.5
4,715,944	-		GFF4714	0.18	-0.1
4,715,944	-		GFF4714	0.18	+0.2
4,715,944	-		GFF4714	0.18	+0.4
4,715,992	-		GFF4714	0.21	-0.6
4,716,087	+		GFF4714	0.26	-0.6
4,716,092	+		GFF4714	0.26	-1.9
4,716,100	-		GFF4714	0.27	+1.9
4,716,100	-		GFF4714	0.27	+0.5
4,716,102	-		GFF4714	0.27	+0.6
4,716,110	-		GFF4714	0.28	+0.1
4,716,112	+		GFF4714	0.28	+0.2
4,716,164	-		GFF4714	0.31	-0.2
4,716,164	-		GFF4714	0.31	-0.9
4,716,173	+		GFF4714	0.31	+0.1
4,716,173	+		GFF4714	0.31	-0.6
4,716,180	+		GFF4714	0.31	+0.0
4,716,181	-		GFF4714	0.32	-1.1
4,716,181	-		GFF4714	0.32	+0.1
4,716,181	-		GFF4714	0.32	+0.2
4,716,181	-		GFF4714	0.32	-0.3
4,716,188	-		GFF4714	0.32	+0.3
4,716,198	-		GFF4714	0.32	+0.7
4,716,214	+		GFF4714	0.33	+0.4
4,716,217	-		GFF4714	0.34	-0.4
4,716,217	-		GFF4714	0.34	+0.3
4,716,219	+		GFF4714	0.34	+0.4
4,716,222	-		GFF4714	0.34	-0.7
4,716,222	-		GFF4714	0.34	-0.3
4,716,222	-		GFF4714	0.34	+0.3
4,716,225	-		GFF4714	0.34	-1.7
4,716,227	-		GFF4714	0.34	-0.8
4,716,232	-		GFF4714	0.34	+0.5
4,716,242	+		GFF4714	0.35	-1.6
4,716,245	-		GFF4714	0.35	+1.7
4,716,250	-		GFF4714	0.35	-0.2
4,716,250	-		GFF4714	0.35	+1.4
4,716,250	-		GFF4714	0.35	-0.3
4,716,250	-		GFF4714	0.35	-0.5
4,716,264	+		GFF4714	0.36	-0.1
4,716,303	-		GFF4714	0.38	+0.5
4,716,312	+		GFF4714	0.39	-0.6
4,716,391	+		GFF4714	0.43	+1.3
4,716,391	+		GFF4714	0.43	+0.0
4,716,399	-		GFF4714	0.44	-1.1
4,716,415	-		GFF4714	0.45	+1.4
4,716,439	+		GFF4714	0.46	-1.1
4,716,439	+		GFF4714	0.46	-0.8
4,716,446	+		GFF4714	0.47	-1.6
4,716,446	+		GFF4714	0.47	-0.7
4,716,447	-		GFF4714	0.47	-0.4
4,716,459	+		GFF4714	0.47	-1.0
4,716,462	+		GFF4714	0.47	-1.6
4,716,470	-		GFF4714	0.48	+0.2
4,716,480	+		GFF4714	0.48	-1.0
4,716,549	-		GFF4714	0.52	+0.1
4,716,549	-		GFF4714	0.52	+0.5
4,716,561	-		GFF4714	0.53	-0.0
4,716,563	+		GFF4714	0.53	-0.0
4,716,563	+		GFF4714	0.53	-0.1
4,716,571	-		GFF4714	0.54	+1.6
4,716,573	-		GFF4714	0.54	-1.3
4,716,580	+		GFF4714	0.54	+0.4
4,716,604	-		GFF4714	0.55	-0.4
4,716,636	+		GFF4714	0.57	-0.7
4,716,643	+		GFF4714	0.58	+1.1
4,716,684	-		GFF4714	0.60	-0.6
4,716,695	+		GFF4714	0.61	-0.2
4,716,695	+		GFF4714	0.61	-0.4
4,716,695	+		GFF4714	0.61	+0.9
4,716,703	-		GFF4714	0.61	+0.6
4,716,718	+		GFF4714	0.62	-0.7
4,716,718	+		GFF4714	0.62	-1.4
4,716,718	+		GFF4714	0.62	+0.2
4,716,726	-		GFF4714	0.62	+0.1
4,716,726	-		GFF4714	0.62	+0.2
4,716,726	-		GFF4714	0.62	-1.2
4,716,726	-		GFF4714	0.62	+0.8
4,716,767	+		GFF4714	0.65	+0.6
4,716,772	+		GFF4714	0.65	-0.9
4,716,785	-		GFF4714	0.66	+0.6
4,716,786	+		GFF4714	0.66	-0.6
4,716,786	+		GFF4714	0.66	+0.6
4,716,789	-		GFF4714	0.66	+0.0
4,716,794	-		GFF4714	0.66	-1.7
4,716,795	-		GFF4714	0.66	-1.4
4,716,897	+		GFF4714	0.72	+0.6
4,716,905	-		GFF4714	0.72	+1.1
4,716,933	+		GFF4714	0.74	+0.4
4,716,938	+		GFF4714	0.74	-0.8
4,716,941	-		GFF4714	0.75	+0.4
4,716,941	-		GFF4714	0.75	-1.2
4,716,946	-		GFF4714	0.75	-0.4
4,716,947	+		GFF4714	0.75	+0.9
4,716,947	+		GFF4714	0.75	+0.1
4,716,947	+		GFF4714	0.75	+0.3
4,716,947	+		GFF4714	0.75	+0.6
4,716,955	-		GFF4714	0.75	+0.6
4,716,955	-		GFF4714	0.75	-0.3
4,716,955	-		GFF4714	0.75	-0.7
4,716,955	-		GFF4714	0.75	+0.6
4,716,955	-		GFF4714	0.75	+0.1
4,716,967	-		GFF4714	0.76	+0.3
4,716,971	+		GFF4714	0.76	-1.6
4,716,978	+		GFF4714	0.77	+0.6
4,716,991	+		GFF4714	0.77	-0.9
4,716,991	+		GFF4714	0.77	-0.5
4,716,992	+		GFF4714	0.77	-0.6
4,717,000	-		GFF4714	0.78	-0.1
4,717,000	-		GFF4714	0.78	-0.8
4,717,001	-		GFF4714	0.78	+0.9
4,717,004	+		GFF4714	0.78	+1.2
4,717,004	+		GFF4714	0.78	+0.9
4,717,007	-		GFF4714	0.78	-1.7
4,717,062	-		GFF4714	0.81	+0.4
4,717,127	+		GFF4714	0.85	-1.4
4,717,183	+		GFF4714	0.88	-0.5
4,717,183	+		GFF4714	0.88	+0.2
4,717,183	+		GFF4714	0.88	-0.4
4,717,184	+		GFF4714	0.88	+1.1
4,717,184	+		GFF4714	0.88	-1.6
4,717,191	-		GFF4714	0.89	-1.5
4,717,191	-		GFF4714	0.89	-1.5
4,717,191	-		GFF4714	0.89	-0.9
4,717,191	-		GFF4714	0.89	+1.0
4,717,191	-		GFF4714	0.89	-0.7
4,717,192	-		GFF4714	0.89	-0.3
4,717,192	-		GFF4714	0.89	+0.7
4,717,192	-		GFF4714	0.89	+0.1
4,717,222	+				-0.7
4,717,222	+				-1.9
4,717,222	+				+1.0
4,717,222	+				-0.5
4,717,228	+				+0.1
4,717,230	-				-0.3
4,717,268	+				+1.2
4,717,283	+				-0.6
4,717,292	+				+0.5
4,717,297	+				-0.6
4,717,297	+				+0.2
4,717,297	+				+1.2
4,717,297	+				-0.1
4,717,342	-				+0.5
4,717,363	-				-0.7
4,717,363	-				+0.3
4,717,370	-				-1.1
4,717,370	-				-1.5
4,717,379	+				-0.1
4,717,379	+				+0.1
4,717,379	+				-1.1
4,717,380	+				-2.7
4,717,387	-				-0.2
4,717,387	-				+0.9
4,717,387	-				-1.5
4,717,387	-				+0.7
4,717,387	-				+0.5
4,717,397	+				-0.0
4,717,420	+				-2.8
4,717,432	+				-1.9
4,717,433	-				+0.6
4,717,433	-				-0.4
4,717,439	-				-1.2
4,717,440	-				-0.6
4,717,442	+				-0.6
4,717,448	+				-0.8
4,717,448	+				+0.8
4,717,448	+				-0.3
4,717,450	-				+0.2
4,717,450	-				+0.8
4,717,454	+				+0.2
4,717,483	-				+0.3
4,717,488	-				-1.5
4,717,509	-		GFF4715	0.10	-0.3
4,717,509	-		GFF4715	0.10	+0.2
4,717,514	+		GFF4715	0.11	-0.0
4,717,519	+		GFF4715	0.12	-2.0
4,717,535	+		GFF4715	0.13	-0.3
4,717,547	+		GFF4715	0.15	-0.5
4,717,547	+		GFF4715	0.15	-0.0
4,717,557	-		GFF4715	0.16	-1.6
4,717,580	+		GFF4715	0.19	+0.2
4,717,592	+		GFF4715	0.20	-0.7
4,717,603	+		GFF4715	0.21	-0.9
4,717,616	+		GFF4715	0.23	+0.1
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