Strain Fitness in Sphingobium sp. HT1-2 around GFF4353

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,353,162	-		GFF4352	0.47	+1.7
4,353,162	-		GFF4352	0.47	+0.0
4,353,165	+		GFF4352	0.47	-0.7
4,353,165	+		GFF4352	0.47	-0.3
4,353,167	+		GFF4352	0.47	-1.3
4,353,170	+		GFF4352	0.48	-1.5
4,353,173	-		GFF4352	0.48	+0.2
4,353,186	+		GFF4352	0.49	-0.0
4,353,199	+		GFF4352	0.49	-1.0
4,353,202	+		GFF4352	0.49	+0.3
4,353,204	+		GFF4352	0.50	-1.4
4,353,204	+		GFF4352	0.50	+0.5
4,353,204	+		GFF4352	0.50	-0.1
4,353,204	+		GFF4352	0.50	-1.8
4,353,210	+		GFF4352	0.50	+0.8
4,353,212	-		GFF4352	0.50	+0.5
4,353,212	-		GFF4352	0.50	+0.1
4,353,212	-		GFF4352	0.50	-0.2
4,353,217	-		GFF4352	0.50	-1.0
4,353,224	+		GFF4352	0.51	-2.3
4,353,237	+		GFF4352	0.52	-0.8
4,353,245	-		GFF4352	0.52	-1.5
4,353,245	-		GFF4352	0.52	+1.0
4,353,245	-		GFF4352	0.52	+0.4
4,353,245	-		GFF4352	0.52	-0.4
4,353,252	+		GFF4352	0.53	-0.9
4,353,253	-		GFF4352	0.53	+0.3
4,353,260	-		GFF4352	0.53	-1.1
4,353,266	-		GFF4352	0.53	-0.1
4,353,268	+		GFF4352	0.54	-0.6
4,353,272	-		GFF4352	0.54	+0.3
4,353,304	-		GFF4352	0.56	-1.8
4,353,346	+		GFF4352	0.58	-2.7
4,353,354	+		GFF4352	0.59	-1.9
4,353,356	-		GFF4352	0.59	-1.7
4,353,356	-		GFF4352	0.59	-1.3
4,353,378	+		GFF4352	0.60	+0.2
4,353,378	+		GFF4352	0.60	+0.2
4,353,378	+		GFF4352	0.60	+0.1
4,353,378	+		GFF4352	0.60	-0.6
4,353,386	-		GFF4352	0.61	-0.8
4,353,386	-		GFF4352	0.61	-0.4
4,353,386	-		GFF4352	0.61	-0.6
4,353,386	-		GFF4352	0.61	-3.4
4,353,398	+		GFF4352	0.61	-1.5
4,353,405	+		GFF4352	0.62	+1.0
4,353,406	+		GFF4352	0.62	+0.8
4,353,406	+		GFF4352	0.62	+1.6
4,353,406	+		GFF4352	0.62	-0.8
4,353,406	+		GFF4352	0.62	-0.4
4,353,406	+		GFF4352	0.62	-2.4
4,353,414	-		GFF4352	0.62	-0.6
4,353,414	-		GFF4352	0.62	+0.3
4,353,414	-		GFF4352	0.62	-0.3
4,353,414	-		GFF4352	0.62	-1.3
4,353,414	-		GFF4352	0.62	-0.5
4,353,428	+		GFF4352	0.63	-1.0
4,353,436	-		GFF4352	0.64	-0.3
4,353,446	-		GFF4352	0.64	-1.0
4,353,448	-		GFF4352	0.64	-0.6
4,353,451	-		GFF4352	0.65	+1.1
4,353,473	+		GFF4352	0.66	-0.6
4,353,520	+		GFF4352	0.69	-0.3
4,353,528	-		GFF4352	0.69	-0.5
4,353,553	+		GFF4352	0.71	+0.2
4,353,557	-		GFF4352	0.71	-2.3
4,353,564	+		GFF4352	0.72	-0.7
4,353,564	+		GFF4352	0.72	-0.9
4,353,573	-		GFF4352	0.72	+0.3
4,353,574	-		GFF4352	0.72	+0.6
4,353,579	-		GFF4352	0.72	-0.4
4,353,580	+		GFF4352	0.73	-0.8
4,353,581	-		GFF4352	0.73	-0.1
4,353,598	-		GFF4352	0.74	-0.5
4,353,644	-		GFF4352	0.76	+1.2
4,353,657	+		GFF4352	0.77	-1.5
4,353,665	-		GFF4352	0.78	-0.7
4,353,673	+		GFF4352	0.78	-0.6
4,353,681	-		GFF4352	0.79	-0.4
4,353,699	+		GFF4352	0.80	-0.8
4,353,699	+		GFF4352	0.80	-0.4
4,353,699	+		GFF4352	0.80	-0.7
4,353,704	+		GFF4352	0.80	+0.3
4,353,707	-		GFF4352	0.80	-1.5
4,353,709	+		GFF4352	0.80	-2.0
4,353,709	+		GFF4352	0.80	-0.6
4,353,709	+		GFF4352	0.80	-0.6
4,353,717	-		GFF4352	0.81	+0.6
4,353,717	-		GFF4352	0.81	-0.4
4,353,717	-		GFF4352	0.81	-1.1
4,353,719	-		GFF4352	0.81	-0.1
4,353,740	-		GFF4352	0.82	-0.2
4,353,759	+		GFF4352	0.83	-0.5
4,353,764	+		GFF4352	0.84	-0.3
4,353,772	-		GFF4352	0.84	+0.1
4,353,782	-		GFF4352	0.85	+2.0
4,353,784	+		GFF4352	0.85	-1.0
4,353,821	-		GFF4352	0.87	+0.4
4,353,821	-		GFF4352	0.87	-0.2
4,353,830	+		GFF4352	0.88	-0.2
4,353,836	+		GFF4352	0.88	+0.4
4,353,836	+		GFF4352	0.88	+0.2
4,353,836	+		GFF4352	0.88	-0.8
4,353,838	-		GFF4352	0.88	-0.8
4,353,844	-		GFF4352	0.89	+1.3
4,353,844	-		GFF4352	0.89	-1.8
4,353,844	-		GFF4352	0.89	+1.0
4,353,844	-		GFF4352	0.89	-0.2
4,353,844	-		GFF4352	0.89	-0.0
4,353,851	+		GFF4352	0.89	-1.0
4,353,851	+		GFF4352	0.89	+0.1
4,353,876	+				+0.2
4,353,876	+				-1.7
4,353,876	+				-0.3
4,353,876	+				-0.8
4,353,884	-				+0.2
4,353,884	-				-1.4
4,353,886	-				-0.7
4,353,906	+				+0.4
4,353,914	-				-0.3
4,353,914	-				+0.2
4,353,916	+				-0.4
4,353,916	+				+0.2
4,353,924	-				-1.2
4,353,926	+				-1.5
4,353,926	+				+0.9
4,353,934	-				-1.7
4,353,935	+				+1.0
4,353,935	+				-1.2
4,353,936	+				-0.7
4,353,943	-				-1.2
4,353,952	+				-1.0
4,353,971	+				-0.2
4,353,971	+				-0.7
4,353,972	+				+0.0
4,353,979	-				+0.4
4,353,985	-				+0.2
4,353,990	+				+0.6
4,353,996	+				+0.8
4,353,999	-				-0.2
4,354,004	-				-1.4
4,354,018	+				-0.7
4,354,025	+				-1.7
4,354,033	-				-0.0
4,354,046	-				-0.8
4,354,140	+				+0.3
4,354,163	+				+0.0
4,354,163	+				-0.8
4,354,171	-				-0.6
4,354,188	+				-1.5
4,354,189	-				+0.7
4,354,189	-				+0.4
4,354,196	-				-0.4
4,354,196	-				-0.9
4,354,198	+				-0.1
4,354,226	-		GFF4353	0.15	-0.7
4,354,255	+		GFF4353	0.21	+0.2
4,354,255	+		GFF4353	0.21	+0.9
4,354,255	+		GFF4353	0.21	+1.6
4,354,255	+		GFF4353	0.21	+1.6
4,354,255	+		GFF4353	0.21	-2.0
4,354,257	-		GFF4353	0.22	+0.2
4,354,263	-		GFF4353	0.23	+0.1
4,354,275	+		GFF4353	0.26	+0.4
4,354,277	+		GFF4353	0.26	+0.4
4,354,277	+		GFF4353	0.26	-0.5
4,354,277	+		GFF4353	0.26	-1.6
4,354,277	+		GFF4353	0.26	-1.4
4,354,277	+		GFF4353	0.26	-1.0
4,354,277	+		GFF4353	0.26	+1.0
4,354,277	+		GFF4353	0.26	+1.6
4,354,282	+		GFF4353	0.27	-1.1
4,354,285	-		GFF4353	0.28	+0.4
4,354,285	-		GFF4353	0.28	+1.7
4,354,285	-		GFF4353	0.28	+0.1
4,354,285	-		GFF4353	0.28	+0.9
4,354,285	-		GFF4353	0.28	-1.6
4,354,290	-		GFF4353	0.29	-1.5
4,354,309	+		GFF4353	0.33	-0.4
4,354,348	+		GFF4353	0.42	+0.8
4,354,356	-		GFF4353	0.44	-0.4
4,354,356	-		GFF4353	0.44	+0.6
4,354,365	+		GFF4353	0.46	+1.2
4,354,365	+		GFF4353	0.46	-0.9
4,354,373	-		GFF4353	0.48	+0.3
4,354,375	+		GFF4353	0.48	-0.6
4,354,399	-		GFF4353	0.53	+0.1
4,354,399	-		GFF4353	0.53	-2.2
4,354,404	-		GFF4353	0.55	+0.3
4,354,421	+		GFF4353	0.58	+0.3
4,354,440	+		GFF4353	0.63	-0.0
4,354,482	-		GFF4353	0.72	-0.2
4,354,505	+		GFF4353	0.77	-0.6
4,354,505	+		GFF4353	0.77	+0.1
4,354,514	-		GFF4353	0.79	+0.0
4,354,515	+		GFF4353	0.79	+1.0
4,354,515	+		GFF4353	0.79	-0.9
4,354,516	+		GFF4353	0.80	+0.1
4,354,523	-		GFF4353	0.81	-0.6
4,354,543	+		GFF4353	0.86	+1.2
4,354,543	+		GFF4353	0.86	-0.9
4,354,543	+		GFF4353	0.86	+0.8
4,354,543	+		GFF4353	0.86	+1.0
4,354,543	+		GFF4353	0.86	+0.7
4,354,543	+		GFF4353	0.86	+0.5
4,354,548	+		GFF4353	0.87	-1.8
4,354,551	-		GFF4353	0.87	-0.5
4,354,551	-		GFF4353	0.87	+0.6
4,354,551	-		GFF4353	0.87	+2.2
4,354,551	-		GFF4353	0.87	+0.1
4,354,558	+		GFF4353	0.89	+1.7
4,354,586	-				-2.1
4,354,640	+				-1.5
4,354,659	+				-0.1
4,354,659	-				-3.3
4,354,668	+				-0.3
4,354,669	-				-1.6
4,354,733	+		GFF4354	0.19	-1.0
4,354,757	+		GFF4354	0.34	-0.2
4,354,763	-		GFF4354	0.38	+0.6
4,354,765	-		GFF4354	0.39	-1.0
4,354,776	+		GFF4354	0.45	-0.0
4,354,784	-		GFF4354	0.50	-0.0
4,354,784	-		GFF4354	0.50	-0.6
4,354,798	+		GFF4354	0.59	+0.0
4,354,836	-		GFF4354	0.82	+0.6
4,354,846	+		GFF4354	0.88	-0.9
4,354,848	+		GFF4354	0.89	-0.2
4,354,865	+				-0.9
4,354,878	+				-1.4
4,354,886	+				-0.6
4,354,886	-				-1.0
4,354,889	-				-0.6
4,354,894	-				-1.4
4,354,901	+				-0.6
4,354,901	+				+0.3
4,354,901	+				+1.2
4,354,904	-				-0.3
4,354,909	-				+0.4
4,354,919	-				-0.5
4,354,928	+				-1.8
4,354,941	-				-1.6
4,354,941	-				-0.6
4,354,946	-				-0.8
4,354,947	-				-0.6
4,354,947	-				-1.5
4,354,952	+				-1.5
4,354,964	-				+1.4
4,354,966	+				-0.7
4,354,968	-				+1.6
4,354,969	-				-0.3
4,354,974	-				+1.0
4,354,974	-				-0.3
4,354,976	+				-1.2
4,354,976	+				+1.1
4,354,984	-				-1.0
4,354,984	-				-2.3
4,354,986	-				+0.1
4,354,991	+				-1.6
4,354,997	+				+0.1
4,354,998	+				+1.5
4,354,998	+				-1.6
4,354,998	+				-2.3
4,355,006	-				-0.1
4,355,006	-				+0.5
4,355,006	-				-0.4
4,355,045	-				-0.0
4,355,051	-				+0.1
4,355,051	-				+0.1
4,355,053	+				+0.4
4,355,109	+				+0.3
4,355,109	+				-1.3
4,355,109	+				-1.7
4,355,109	+				+0.6
4,355,109	+				+0.2
4,355,109	+				-0.0
4,355,109	+				-1.0
4,355,109	+				-0.5
4,355,109	+				+0.2
4,355,109	+				+0.5
4,355,114	+				+1.2
4,355,117	-				-0.4
4,355,117	-				-1.0
4,355,117	-				-0.3
4,355,117	-				-0.6
4,355,117	-				-1.2
4,355,117	-				-0.5
4,355,117	-				-1.2
4,355,124	+				-0.0
4,355,132	-				-0.7
4,355,145	+				+0.2
4,355,145	+				-0.9
4,355,145	+				+0.8
4,355,145	+				-0.6
4,355,145	+				+0.5
4,355,145	+				-0.1
4,355,145	+				+0.2
4,355,145	+				+0.4
4,355,145	+				+0.6
4,355,145	+				-0.6
4,355,145	+				-0.4
4,355,145	+				-1.8
4,355,145	+				-1.4
4,355,151	+				-1.9
4,355,151	+				-1.8
4,355,151	+				-0.6
4,355,153	-				+0.2
4,355,153	-				-0.5
4,355,153	-				-0.5
4,355,153	-				+0.0
4,355,153	-				-0.1
4,355,153	-				-0.8
4,355,153	-				+2.1
4,355,153	-				-0.5
4,355,153	-				-0.3
4,355,153	-				-0.2
4,355,153	-				-0.6
4,355,153	-				-0.4
4,355,153	-				+0.4
4,355,153	-				-0.3
4,355,153	-				+0.2
4,355,153	-				+0.2
4,355,153	-				-1.5
4,355,153	-				+0.3
4,355,153	-				+0.5
4,355,153	-				+0.1
4,355,153	-				+0.1
4,355,172	+		GFF4355	0.14	-0.7
4,355,180	-		GFF4355	0.16	-2.0
4,355,191	+		GFF4355	0.19	-0.3
4,355,197	+		GFF4355	0.21	-1.2
4,355,236	+		GFF4355	0.31	-0.2
4,355,241	+		GFF4355	0.33	-0.2
4,355,241	+		GFF4355	0.33	-0.3
4,355,241	+		GFF4355	0.33	-1.0
4,355,241	+		GFF4355	0.33	-0.2
4,355,241	+		GFF4355	0.33	+0.3
4,355,241	+		GFF4355	0.33	-0.5
4,355,249	-		GFF4355	0.35	-0.1
4,355,249	-		GFF4355	0.35	+0.2
4,355,249	-		GFF4355	0.35	+0.0
4,355,249	-		GFF4355	0.35	+0.7
4,355,249	-		GFF4355	0.35	-0.3
4,355,249	-		GFF4355	0.35	-0.5
4,355,264	+		GFF4355	0.39	+0.2
4,355,272	-		GFF4355	0.41	+0.8
4,355,275	+		GFF4355	0.42	+0.3
4,355,308	-		GFF4355	0.50	+0.6
4,355,323	-		GFF4355	0.54	-0.8
4,355,342	-		GFF4355	0.59	-1.9
4,355,349	+		GFF4355	0.61	-0.4
4,355,357	+		GFF4355	0.63	-1.9
4,355,357	+		GFF4355	0.63	-1.5
4,355,357	+		GFF4355	0.63	-0.1
4,355,357	-		GFF4355	0.63	+0.2
4,355,359	-		GFF4355	0.64	-0.6
4,355,365	-		GFF4355	0.66	+0.4
4,355,382	-		GFF4355	0.70	-1.9
4,355,402	+		GFF4355	0.75	+1.7
4,355,429	-		GFF4355	0.83	-0.6
4,355,437	+		GFF4355	0.85	-0.6
4,355,442	+		GFF4355	0.86	-0.3
4,355,442	+		GFF4355	0.86	-0.5
4,355,442	+		GFF4355	0.86	+0.3
4,355,445	-		GFF4355	0.87	-0.5
4,355,445	-		GFF4355	0.87	-0.3
4,355,450	-		GFF4355	0.88	-0.2
4,355,462	-				-0.3
4,355,462	-				+0.2
4,355,505	+				-0.8
4,355,505	+				-0.1
4,355,505	+				+0.1
4,355,505	+				-0.6
4,355,506	-				-0.3
4,355,513	-				-2.5
4,355,513	-				+0.3
4,355,543	+				-0.2
4,355,569	-				-2.2
4,355,571	+				-0.5
4,355,576	+				+0.4
4,355,579	-				-0.4
4,355,584	-				-0.1
4,355,584	-				-0.2
4,355,587	+				-1.4