Strain Fitness in Sphingobium sp. HT1-2 around GFF3803

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,845,031	+		GFF3802	0.42	-1.6
3,845,037	+		GFF3802	0.42	+0.4
3,845,041	-		GFF3802	0.42	-0.1
3,845,041	-		GFF3802	0.42	-0.1
3,845,045	-		GFF3802	0.43	-1.6
3,845,046	-		GFF3802	0.43	+0.4
3,845,122	-		GFF3802	0.48	+0.5
3,845,203	-		GFF3802	0.54	-0.5
3,845,206	-		GFF3802	0.54	+0.3
3,845,208	+		GFF3802	0.54	+0.5
3,845,215	+		GFF3802	0.55	-1.7
3,845,215	+		GFF3802	0.55	-1.3
3,845,221	+		GFF3802	0.55	+0.6
3,845,222	+		GFF3802	0.55	-2.0
3,845,222	+		GFF3802	0.55	+1.5
3,845,230	+		GFF3802	0.56	-0.4
3,845,230	+		GFF3802	0.56	+0.8
3,845,230	-		GFF3802	0.56	-0.2
3,845,230	-		GFF3802	0.56	+0.2
3,845,230	-		GFF3802	0.56	-0.2
3,845,230	-		GFF3802	0.56	-1.7
3,845,232	-		GFF3802	0.56	-0.6
3,845,257	+		GFF3802	0.58	-3.5
3,845,266	-		GFF3802	0.58	-1.1
3,845,270	+		GFF3802	0.59	-0.3
3,845,280	+		GFF3802	0.59	-0.5
3,845,281	+		GFF3802	0.59	+0.3
3,845,289	-		GFF3802	0.60	-0.8
3,845,294	+		GFF3802	0.60	+0.6
3,845,294	+		GFF3802	0.60	+0.9
3,845,302	-		GFF3802	0.61	+0.1
3,845,302	-		GFF3802	0.61	-0.3
3,845,302	-		GFF3802	0.61	-0.5
3,845,302	-		GFF3802	0.61	-0.8
3,845,311	-		GFF3802	0.62	+0.8
3,845,315	+		GFF3802	0.62	-0.7
3,845,315	+		GFF3802	0.62	-1.1
3,845,315	+		GFF3802	0.62	-0.2
3,845,315	+		GFF3802	0.62	-1.3
3,845,323	-		GFF3802	0.62	+1.2
3,845,323	-		GFF3802	0.62	+0.5
3,845,323	-		GFF3802	0.62	-0.1
3,845,323	-		GFF3802	0.62	-0.0
3,845,323	-		GFF3802	0.62	+0.3
3,845,323	-		GFF3802	0.62	+0.2
3,845,323	-		GFF3802	0.62	-0.1
3,845,358	+		GFF3802	0.65	-2.5
3,845,382	-		GFF3802	0.67	+1.1
3,845,409	+		GFF3802	0.69	+0.7
3,845,417	+		GFF3802	0.69	-0.6
3,845,417	+		GFF3802	0.69	-0.1
3,845,419	+		GFF3802	0.69	+0.6
3,845,422	+		GFF3802	0.70	+0.4
3,845,425	-		GFF3802	0.70	-1.6
3,845,425	-		GFF3802	0.70	+0.6
3,845,425	-		GFF3802	0.70	+0.7
3,845,425	-		GFF3802	0.70	-0.1
3,845,425	-		GFF3802	0.70	-1.4
3,845,425	-		GFF3802	0.70	-2.3
3,845,425	-		GFF3802	0.70	+0.5
3,845,427	-		GFF3802	0.70	+0.8
3,845,430	-		GFF3802	0.70	-0.2
3,845,450	+		GFF3802	0.72	-1.5
3,845,455	-		GFF3802	0.72	-1.2
3,845,469	+		GFF3802	0.73	-0.5
3,845,477	-		GFF3802	0.73	-0.1
3,845,477	-		GFF3802	0.73	-0.6
3,845,477	-		GFF3802	0.73	-0.6
3,845,492	+		GFF3802	0.75	-1.5
3,845,492	+		GFF3802	0.75	-0.9
3,845,500	-		GFF3802	0.75	+1.3
3,845,538	-		GFF3802	0.78	+0.4
3,845,557	-		GFF3802	0.79	+1.3
3,845,559	+		GFF3802	0.79	-1.2
3,845,559	+		GFF3802	0.79	-0.0
3,845,559	+		GFF3802	0.79	-2.3
3,845,564	+		GFF3802	0.80	-1.9
3,845,564	+		GFF3802	0.80	+0.8
3,845,565	+		GFF3802	0.80	-0.7
3,845,569	+		GFF3802	0.80	+0.7
3,845,570	-		GFF3802	0.80	-0.9
3,845,572	-		GFF3802	0.80	+0.3
3,845,573	-		GFF3802	0.80	-1.0
3,845,598	+		GFF3802	0.82	-1.8
3,845,611	-		GFF3802	0.83	+0.4
3,845,613	+		GFF3802	0.83	+0.4
3,845,618	+		GFF3802	0.84	-1.2
3,845,618	+		GFF3802	0.84	-1.0
3,845,618	+		GFF3802	0.84	+0.1
3,845,626	-		GFF3802	0.84	+1.9
3,845,626	-		GFF3802	0.84	+0.4
3,845,626	-		GFF3802	0.84	-1.2
3,845,646	-		GFF3802	0.86	+0.5
3,845,674	-		GFF3802	0.88	+0.0
3,845,674	-		GFF3802	0.88	+0.2
3,845,676	+		GFF3802	0.88	-1.8
3,845,684	-		GFF3802	0.88	-0.7
3,845,707	+		GFF3802	0.90	-1.8
3,845,710	-				-0.3
3,845,712	+				+0.3
3,845,720	-				+1.0
3,845,736	-				+0.3
3,845,741	-				-1.7
3,845,760	+				-0.1
3,845,765	+				+0.1
3,845,765	+				-1.1
3,845,765	+				-0.6
3,845,765	+				+0.2
3,845,765	+				+1.1
3,845,765	+				+0.1
3,845,765	+				+0.0
3,845,765	+				+0.9
3,845,773	-				-0.5
3,845,773	-				+0.4
3,845,773	-				-1.1
3,845,777	-				+0.9
3,845,777	-				-0.3
3,845,781	+				-0.5
3,845,801	+				+0.0
3,845,801	+				-0.1
3,845,808	-				-0.1
3,845,808	-				+0.0
3,845,809	-				-1.1
3,845,834	-				-2.0
3,845,835	+				-0.2
3,845,837	+				+0.4
3,845,837	+				-2.0
3,845,845	-				+1.9
3,845,853	+				-1.1
3,845,863	+				+0.7
3,845,863	+				-1.2
3,845,863	+				+0.3
3,845,863	+				+0.3
3,845,863	+				+0.7
3,845,863	+				+0.4
3,845,863	+				-1.0
3,845,863	+				-0.8
3,845,863	+				-1.2
3,845,869	-				-0.2
3,845,869	-				-1.0
3,845,871	-				-0.3
3,845,871	-				-1.7
3,845,871	-				-0.7
3,845,878	-				-0.3
3,845,895	+				-0.4
3,845,920	+				-1.3
3,845,921	-				-0.6
3,845,987	+				-1.5
3,846,003	-				-0.9
3,846,017	+				-1.2
3,846,017	+				-0.8
3,846,022	+				-0.0
3,846,022	+				-1.5
3,846,030	-				-1.2
3,846,039	-				-0.8
3,846,074	-		GFF3803	0.11	-1.9
3,846,076	+		GFF3803	0.11	+0.2
3,846,078	+		GFF3803	0.11	-1.0
3,846,081	-		GFF3803	0.12	-0.9
3,846,100	+		GFF3803	0.14	-1.5
3,846,100	+		GFF3803	0.14	-1.7
3,846,100	+		GFF3803	0.14	-2.6
3,846,100	+		GFF3803	0.14	+0.3
3,846,108	-		GFF3803	0.15	+0.3
3,846,108	-		GFF3803	0.15	-1.9
3,846,108	-		GFF3803	0.15	+0.9
3,846,108	-		GFF3803	0.15	+1.5
3,846,108	-		GFF3803	0.15	+1.4
3,846,113	-		GFF3803	0.16	-1.3
3,846,118	+		GFF3803	0.17	-1.2
3,846,132	+		GFF3803	0.19	-1.0
3,846,137	+		GFF3803	0.19	-0.6
3,846,137	+		GFF3803	0.19	-1.3
3,846,140	-		GFF3803	0.20	-0.1
3,846,140	-		GFF3803	0.20	-1.0
3,846,142	+		GFF3803	0.20	-1.7
3,846,145	-		GFF3803	0.20	-2.5
3,846,147	+		GFF3803	0.21	-0.6
3,846,148	-		GFF3803	0.21	-1.0
3,846,155	-		GFF3803	0.22	-0.9
3,846,155	-		GFF3803	0.22	+0.4
3,846,155	-		GFF3803	0.22	+0.6
3,846,173	+		GFF3803	0.24	+0.4
3,846,173	+		GFF3803	0.24	+1.0
3,846,175	+		GFF3803	0.25	-0.1
3,846,180	+		GFF3803	0.25	+0.0
3,846,181	-		GFF3803	0.25	+0.9
3,846,181	-		GFF3803	0.25	-1.2
3,846,191	-		GFF3803	0.27	+0.8
3,846,191	-		GFF3803	0.27	+0.6
3,846,191	-		GFF3803	0.27	-0.9
3,846,191	-		GFF3803	0.27	-0.1
3,846,206	+		GFF3803	0.29	-1.3
3,846,206	+		GFF3803	0.29	+0.8
3,846,208	-		GFF3803	0.29	+0.3
3,846,218	+		GFF3803	0.31	+0.1
3,846,218	+		GFF3803	0.31	+0.8
3,846,226	-		GFF3803	0.32	+0.4
3,846,245	+		GFF3803	0.34	-0.9
3,846,251	+		GFF3803	0.35	-0.6
3,846,289	-		GFF3803	0.40	-0.5
3,846,312	+		GFF3803	0.44	-0.0
3,846,317	+		GFF3803	0.44	-0.7
3,846,320	-		GFF3803	0.45	+0.6
3,846,330	-		GFF3803	0.46	+0.0
3,846,349	+		GFF3803	0.49	-0.2
3,846,357	-		GFF3803	0.50	-0.1
3,846,393	+		GFF3803	0.55	-1.3
3,846,428	-		GFF3803	0.60	-1.0
3,846,473	+		GFF3803	0.66	-1.6
3,846,494	+		GFF3803	0.69	-1.4
3,846,520	-		GFF3803	0.72	-0.2
3,846,520	-		GFF3803	0.72	-0.2
3,846,520	-		GFF3803	0.72	-0.6
3,846,525	+		GFF3803	0.73	-1.5
3,846,531	-		GFF3803	0.74	+0.7
3,846,532	-		GFF3803	0.74	-0.1
3,846,533	-		GFF3803	0.74	+0.9
3,846,543	-		GFF3803	0.76	+0.6
3,846,549	+		GFF3803	0.76	-0.4
3,846,562	-		GFF3803	0.78	-2.3
3,846,562	-		GFF3803	0.78	+0.9
3,846,562	-		GFF3803	0.78	+0.4
3,846,567	-		GFF3803	0.79	+0.3
3,846,583	+		GFF3803	0.81	-1.3
3,846,591	-		GFF3803	0.82	-1.8
3,846,591	-		GFF3803	0.82	-1.0
3,846,591	-		GFF3803	0.82	+1.0
3,846,593	+		GFF3803	0.82	-1.6
3,846,593	+		GFF3803	0.82	-0.3
3,846,593	+		GFF3803	0.82	-0.9
3,846,593	+		GFF3803	0.82	-0.5
3,846,598	+		GFF3803	0.83	-0.6
3,846,601	-		GFF3803	0.84	-1.2
3,846,603	+		GFF3803	0.84	-0.0
3,846,603	+		GFF3803	0.84	-0.8
3,846,606	-		GFF3803	0.84	+0.2
3,846,606	-		GFF3803	0.84	+1.0
3,846,606	-		GFF3803	0.84	+0.6
3,846,684	-				-1.6
3,846,705	-				-0.1
3,846,709	+				+0.7
3,846,717	-				-0.5
3,846,717	-				-0.2
3,846,722	-				+1.2
3,846,902	+				+0.5