Strain Fitness in Sphingobium sp. HT1-2 around GFF2989

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,045,006	-		GFF2988	0.61	-0.1
3,045,019	+		GFF2988	0.61	-1.7
3,045,034	+		GFF2988	0.62	-0.3
3,045,037	-		GFF2988	0.62	-0.2
3,045,042	-		GFF2988	0.62	+0.0
3,045,042	-		GFF2988	0.62	-1.1
3,045,050	-		GFF2988	0.63	-0.4
3,045,058	+		GFF2988	0.63	-0.1
3,045,058	+		GFF2988	0.63	-1.7
3,045,058	+		GFF2988	0.63	-0.3
3,045,058	+		GFF2988	0.63	-0.6
3,045,058	+		GFF2988	0.63	-0.6
3,045,059	-		GFF2988	0.63	-1.0
3,045,060	+		GFF2988	0.63	-0.0
3,045,066	-		GFF2988	0.64	+0.4
3,045,066	-		GFF2988	0.64	+1.0
3,045,079	+		GFF2988	0.64	-1.7
3,045,080	+		GFF2988	0.64	+0.2
3,045,081	-		GFF2988	0.65	-1.5
3,045,085	+		GFF2988	0.65	+0.3
3,045,085	+		GFF2988	0.65	-0.4
3,045,085	+		GFF2988	0.65	+0.1
3,045,087	-		GFF2988	0.65	-1.2
3,045,089	+		GFF2988	0.65	-0.6
3,045,093	-		GFF2988	0.65	-0.5
3,045,093	-		GFF2988	0.65	-0.0
3,045,132	-		GFF2988	0.67	-0.3
3,045,159	+		GFF2988	0.69	-0.6
3,045,159	+		GFF2988	0.69	-0.4
3,045,211	+		GFF2988	0.71	-0.4
3,045,219	-		GFF2988	0.72	-0.8
3,045,219	-		GFF2988	0.72	-0.0
3,045,219	-		GFF2988	0.72	+0.3
3,045,230	-		GFF2988	0.72	-0.1
3,045,235	-		GFF2988	0.73	-0.4
3,045,245	-		GFF2988	0.73	+0.5
3,045,250	+		GFF2988	0.73	+0.2
3,045,250	+		GFF2988	0.73	-0.6
3,045,252	+		GFF2988	0.74	-0.3
3,045,252	+		GFF2988	0.74	-0.1
3,045,252	+		GFF2988	0.74	-0.1
3,045,253	-		GFF2988	0.74	+0.5
3,045,260	-		GFF2988	0.74	-1.1
3,045,260	-		GFF2988	0.74	+0.1
3,045,260	-		GFF2988	0.74	+0.2
3,045,287	+		GFF2988	0.75	-0.2
3,045,315	-		GFF2988	0.77	+0.6
3,045,316	+		GFF2988	0.77	-1.6
3,045,323	+		GFF2988	0.77	+0.3
3,045,323	+		GFF2988	0.77	+0.6
3,045,323	+		GFF2988	0.77	+1.2
3,045,334	+		GFF2988	0.78	+0.7
3,045,339	+		GFF2988	0.78	+0.4
3,045,347	-		GFF2988	0.79	-0.6
3,045,347	-		GFF2988	0.79	-0.8
3,045,378	+		GFF2988	0.80	-0.3
3,045,378	+		GFF2988	0.80	+0.4
3,045,378	+		GFF2988	0.80	-0.2
3,045,378	+		GFF2988	0.80	+0.0
3,045,378	+		GFF2988	0.80	+0.1
3,045,378	+		GFF2988	0.80	+0.0
3,045,378	+		GFF2988	0.80	-1.0
3,045,378	+		GFF2988	0.80	+1.0
3,045,381	-		GFF2988	0.80	+0.2
3,045,386	-		GFF2988	0.81	-0.6
3,045,386	-		GFF2988	0.81	-1.1
3,045,386	-		GFF2988	0.81	-2.3
3,045,386	-		GFF2988	0.81	-1.2
3,045,386	-		GFF2988	0.81	-0.5
3,045,386	-		GFF2988	0.81	-1.7
3,045,386	-		GFF2988	0.81	+0.8
3,045,386	-		GFF2988	0.81	-1.3
3,045,386	-		GFF2988	0.81	-0.5
3,045,386	-		GFF2988	0.81	-0.1
3,045,386	-		GFF2988	0.81	-0.4
3,045,386	-		GFF2988	0.81	-0.6
3,045,401	-		GFF2988	0.81	-1.0
3,045,401	-		GFF2988	0.81	-0.1
3,045,402	+		GFF2988	0.81	-1.5
3,045,426	+		GFF2988	0.83	+1.2
3,045,429	-		GFF2988	0.83	-0.3
3,045,433	-		GFF2988	0.83	-1.0
3,045,433	-		GFF2988	0.83	-1.0
3,045,445	+		GFF2988	0.84	-0.8
3,045,453	-		GFF2988	0.84	+0.0
3,045,463	-		GFF2988	0.85	-1.8
3,045,484	-		GFF2988	0.86	-0.2
3,045,484	-		GFF2988	0.86	-1.0
3,045,529	-		GFF2988	0.88	-0.9
3,045,531	+		GFF2988	0.88	-1.3
3,045,573	+				+0.5
3,045,612	-				+0.8
3,045,612	-				+0.9
3,045,623	+				-1.9
3,045,632	-				-1.2
3,045,648	+				+0.0
3,045,667	-				+0.5
3,045,671	+				-0.0
3,045,671	+				+0.7
3,045,704	+				-0.5
3,045,704	+				-0.1
3,045,704	+				-1.6
3,045,719	+				+0.8
3,045,719	+				+0.3
3,045,719	+				-1.5
3,045,719	+				+1.1
3,045,719	+				-1.8
3,045,727	-				+0.9
3,045,727	-				-0.4
3,045,727	-				-2.2
3,045,727	-				-1.9
3,045,727	-				-1.1
3,045,727	-				+0.4
3,045,740	+				+1.0
3,045,745	+				-0.6
3,045,745	+				-0.4
3,045,746	-				-0.4
3,045,748	-				-0.3
3,045,748	-				+0.9
3,045,748	-				-0.9
3,045,748	-				+0.5
3,045,761	-				-0.3
3,045,764	+				-1.9
3,045,764	+				-1.0
3,045,766	-				-0.2
3,045,813	+				-0.5
3,045,813	+				-0.2
3,045,813	+				+0.9
3,045,813	+				-0.2
3,045,813	+				+0.7
3,045,813	+				-0.5
3,045,813	+				+1.5
3,045,820	+				-1.2
3,045,820	+				-0.2
3,045,820	+				-0.5
3,045,820	+				-0.7
3,045,820	+				-0.8
3,045,820	+				-0.1
3,045,820	+				-0.1
3,045,820	+				+0.7
3,045,821	-				+1.2
3,045,821	-				-1.0
3,045,821	-				+0.5
3,045,821	-				+0.2
3,045,821	-				-1.8
3,045,821	-				-0.1
3,045,821	-				-0.3
3,045,821	-				-1.0
3,045,821	-				-0.1
3,045,821	-				-1.0
3,045,828	-				+0.2
3,045,828	-				-1.1
3,045,868	+				-0.3
3,045,868	+				-1.1
3,045,924	-				+0.6
3,045,930	+				+0.5
3,045,938	-				-0.2
3,045,938	-				+0.7
3,045,938	-				+1.5
3,045,972	-				+1.0
3,045,999	+				-0.5
3,046,014	-		GFF2989	0.13	-0.3
3,046,019	+		GFF2989	0.15	+0.6
3,046,019	+		GFF2989	0.15	-0.4
3,046,021	-		GFF2989	0.15	-2.0
3,046,026	-		GFF2989	0.17	-0.0
3,046,027	-		GFF2989	0.18	+0.1
3,046,027	-		GFF2989	0.18	+0.6
3,046,027	-		GFF2989	0.18	-1.7
3,046,027	-		GFF2989	0.18	-1.3
3,046,042	-		GFF2989	0.24	+0.7
3,046,048	+		GFF2989	0.26	-1.4
3,046,053	+		GFF2989	0.28	+0.4
3,046,058	+		GFF2989	0.30	+0.7
3,046,058	+		GFF2989	0.30	-2.2
3,046,058	+		GFF2989	0.30	-1.4
3,046,061	-		GFF2989	0.31	-1.8
3,046,066	-		GFF2989	0.33	-0.0
3,046,066	-		GFF2989	0.33	-0.3
3,046,066	-		GFF2989	0.33	-1.1
3,046,066	-		GFF2989	0.33	-0.4
3,046,071	+		GFF2989	0.35	-0.0
3,046,085	-		GFF2989	0.41	-0.8
3,046,094	+		GFF2989	0.44	-0.2
3,046,095	-		GFF2989	0.45	+1.3
3,046,132	+		GFF2989	0.60	+1.4
3,046,140	-		GFF2989	0.63	-0.9
3,046,165	+		GFF2989	0.73	-1.5
3,046,165	+		GFF2989	0.73	+0.2
3,046,165	+		GFF2989	0.73	-1.6
3,046,170	+		GFF2989	0.75	-0.1
3,046,173	-		GFF2989	0.76	+0.5
3,046,181	+		GFF2989	0.79	-1.2
3,046,181	+		GFF2989	0.79	-0.0
3,046,181	+		GFF2989	0.79	+0.2
3,046,181	+		GFF2989	0.79	-1.8
3,046,181	+		GFF2989	0.79	-1.7
3,046,181	+		GFF2989	0.79	-2.8
3,046,181	+		GFF2989	0.79	-1.5
3,046,181	+		GFF2989	0.79	-1.7
3,046,189	-		GFF2989	0.82	-0.1
3,046,189	-		GFF2989	0.82	+0.4
3,046,189	-		GFF2989	0.82	-2.1
3,046,189	-		GFF2989	0.82	-1.2
3,046,189	-		GFF2989	0.82	-0.5
3,046,191	+		GFF2989	0.83	-2.6
3,046,191	+		GFF2989	0.83	+0.8
3,046,191	+		GFF2989	0.83	-0.6
3,046,199	-		GFF2989	0.86	-0.9
3,046,199	-		GFF2989	0.86	+0.8
3,046,213	+				-0.4
3,046,213	+				+1.4
3,046,215	+				+0.8
3,046,215	+				+0.2
3,046,215	+				+0.1
3,046,215	+				-0.8
3,046,215	+				-1.1
3,046,223	-				-0.5
3,046,223	-				-0.6
3,046,235	+				-1.1
3,046,274	+				+0.2
3,046,284	+				-1.2
3,046,309	+				-0.7
3,046,312	+				-0.9
3,046,312	+				-0.1
3,046,312	-				+0.9
3,046,312	-				+0.3
3,046,317	-				+1.1
3,046,320	-				-1.0
3,046,320	-				-1.1
3,046,320	-				-1.2
3,046,329	+				+0.9
3,046,335	+				+1.1
3,046,337	-				+0.7
3,046,337	-				+1.1
3,046,342	-				-0.1
3,046,342	-				-0.6
3,046,343	-				-0.4
3,046,343	-				-2.2
3,046,378	+				-0.2
3,046,404	+				-0.7
3,046,404	+				-0.9
3,046,404	+				+0.0
3,046,409	+				-0.4
3,046,409	+				+0.1
3,046,409	+				-1.8
3,046,409	+				+0.2
3,046,417	-				-0.1
3,046,417	-				-0.7
3,046,417	-				+0.6
3,046,431	+				+0.3
3,046,466	+				+0.6
3,046,487	+				+1.4
3,046,487	+				-0.8
3,046,487	+				-1.4
3,046,487	+				+0.6
3,046,487	+				-1.5
3,046,487	+				+0.8
3,046,487	+				-0.2
3,046,507	-				-0.1
3,046,507	-				-0.9
3,046,512	+				-0.9
3,046,512	+				+0.4
3,046,512	+				-1.9
3,046,512	+				-0.1
3,046,515	-				-1.9
3,046,521	+				-2.8
3,046,525	+				+0.9
3,046,536	+				-0.1
3,046,537	+				-1.2
3,046,537	+				+0.4
3,046,537	+				-0.8
3,046,537	+				-0.5
3,046,537	+				-0.6
3,046,537	+				+0.5
3,046,537	+				-1.0
3,046,537	+				+0.0
3,046,537	+				-0.6
3,046,537	+				+0.5
3,046,545	-				-2.0
3,046,545	-				+0.5
3,046,545	-				-1.8
3,046,545	-				+0.7
3,046,545	-				+1.4
3,046,545	-				-0.6
3,046,545	-				+0.8
3,046,545	-				+0.7
3,046,545	-				+0.1
3,046,545	-				-0.5
3,046,545	-				-1.4
3,046,545	-				-1.2
3,046,545	-				+0.8
3,046,545	-				-2.9
3,046,545	-				-0.1
3,046,547	+				+0.2
3,046,547	+				+0.5
3,046,555	-				+0.3
3,046,567	+				-1.3
3,046,575	-				+0.4
3,046,575	-				-0.1
3,046,575	-				+0.3
3,046,581	+				+0.1
3,046,581	+				+0.2
3,046,581	+				-1.2
3,046,586	+				-1.3
3,046,589	-				-0.6
3,046,598	-				-1.1
3,046,605	+				-1.4
3,046,613	-				-1.1
3,046,614	-				+1.3
3,046,657	-				-0.7
3,046,667	+				-2.7
3,046,669	+				-0.5
3,046,669	+				+0.5
3,046,672	-		GFF2990	0.10	-0.6
3,046,675	-		GFF2990	0.10	-0.4
3,046,675	-		GFF2990	0.10	-0.2
3,046,675	-		GFF2990	0.10	+0.1
3,046,677	-		GFF2990	0.10	+0.4
3,046,682	-		GFF2990	0.10	-0.7
3,046,682	-		GFF2990	0.10	-1.2
3,046,694	-		GFF2990	0.11	+0.8
3,046,695	+		GFF2990	0.11	-0.5
3,046,703	-		GFF2990	0.11	-1.0
3,046,713	-		GFF2990	0.11	+0.3
3,046,716	+		GFF2990	0.11	-2.0
3,046,718	-		GFF2990	0.11	-0.1
3,046,721	+		GFF2990	0.12	-0.0
3,046,721	+		GFF2990	0.12	-0.4
3,046,724	-		GFF2990	0.12	-0.6
3,046,724	-		GFF2990	0.12	-0.2
3,046,724	-		GFF2990	0.12	-1.9
3,046,724	-		GFF2990	0.12	-0.3
3,046,729	-		GFF2990	0.12	-1.0
3,046,734	-		GFF2990	0.12	+0.2
3,046,815	-		GFF2990	0.14	+0.2
3,046,823	+		GFF2990	0.15	-0.1
3,046,938	+		GFF2990	0.18	+1.1
3,046,945	+		GFF2990	0.18	-0.7
3,046,963	-		GFF2990	0.19	+0.0
3,046,968	-		GFF2990	0.19	-0.8
3,046,992	+		GFF2990	0.20	-0.7
3,047,003	-		GFF2990	0.20	-0.0
3,047,003	-		GFF2990	0.20	-2.8
3,047,003	-		GFF2990	0.20	-0.6
3,047,015	+		GFF2990	0.20	-1.6
3,047,023	-		GFF2990	0.21	-0.5
3,047,056	+		GFF2990	0.22	+1.3
3,047,056	+		GFF2990	0.22	-0.1
3,047,064	-		GFF2990	0.22	-1.5
3,047,064	-		GFF2990	0.22	-0.1
3,047,064	-		GFF2990	0.22	-1.6
3,047,092	+		GFF2990	0.23	-1.6
3,047,092	+		GFF2990	0.23	-2.5
3,047,092	+		GFF2990	0.23	-2.2
3,047,100	-		GFF2990	0.23	+0.2
3,047,100	-		GFF2990	0.23	+0.0
3,047,102	+		GFF2990	0.23	-0.6
3,047,111	+		GFF2990	0.23	-0.1
3,047,119	+		GFF2990	0.23	-2.4
3,047,119	+		GFF2990	0.23	+1.2
3,047,119	+		GFF2990	0.23	-1.3
3,047,127	-		GFF2990	0.24	-0.0
3,047,127	-		GFF2990	0.24	-1.5
3,047,127	-		GFF2990	0.24	-0.4
3,047,127	-		GFF2990	0.24	-0.5
3,047,127	-		GFF2990	0.24	+0.2
3,047,136	+		GFF2990	0.24	-0.2
3,047,141	+		GFF2990	0.24	-0.3
3,047,141	+		GFF2990	0.24	-0.2
3,047,141	+		GFF2990	0.24	+0.5
3,047,141	+		GFF2990	0.24	-0.9
3,047,141	+		GFF2990	0.24	-0.5
3,047,141	+		GFF2990	0.24	+1.0
3,047,141	+		GFF2990	0.24	-1.3
3,047,141	+		GFF2990	0.24	+0.4
3,047,141	+		GFF2990	0.24	-0.2
3,047,141	+		GFF2990	0.24	-0.6
3,047,141	+		GFF2990	0.24	-0.8
3,047,141	+		GFF2990	0.24	+0.6
3,047,141	+		GFF2990	0.24	+0.1
3,047,144	-		GFF2990	0.24	-0.2
3,047,149	-		GFF2990	0.24	+0.9
3,047,149	-		GFF2990	0.24	-0.2
3,047,149	-		GFF2990	0.24	-0.1
3,047,149	-		GFF2990	0.24	-2.2
3,047,149	-		GFF2990	0.24	+1.3
3,047,149	-		GFF2990	0.24	+0.6
3,047,149	-		GFF2990	0.24	-1.9
3,047,149	-		GFF2990	0.24	-1.7
3,047,149	-		GFF2990	0.24	-0.2
3,047,149	-		GFF2990	0.24	+1.0
3,047,149	-		GFF2990	0.24	+0.7
3,047,149	-		GFF2990	0.24	+1.7
3,047,149	-		GFF2990	0.24	+1.5
3,047,149	-		GFF2990	0.24	-0.1
3,047,149	-		GFF2990	0.24	-0.6
3,047,168	-		GFF2990	0.25	-1.1
3,047,180	-		GFF2990	0.25	-0.5
3,047,200	+		GFF2990	0.26	+0.6
3,047,200	+		GFF2990	0.26	+1.5
3,047,228	-		GFF2990	0.27	-0.1
3,047,229	-		GFF2990	0.27	-0.4