Strain Fitness in Sphingobium sp. HT1-2 around GFF1754

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,781,527	+				-0.9
1,781,535	-				+0.9
1,781,538	-				-0.1
1,781,545	-				-0.0
1,781,587	+				-1.1
1,781,596	+				+1.1
1,781,599	-				-0.4
1,781,637	+		GFF1753	0.13	+0.4
1,781,656	+		GFF1753	0.15	-1.1
1,781,660	+		GFF1753	0.16	-0.8
1,781,660	+		GFF1753	0.16	+0.5
1,781,660	+		GFF1753	0.16	-0.8
1,781,660	+		GFF1753	0.16	+0.1
1,781,664	-		GFF1753	0.16	-0.1
1,781,665	+		GFF1753	0.16	-0.3
1,781,665	+		GFF1753	0.16	-1.7
1,781,668	-		GFF1753	0.17	-0.0
1,781,668	-		GFF1753	0.17	+0.6
1,781,689	+		GFF1753	0.19	-0.5
1,781,692	+		GFF1753	0.19	+0.8
1,781,704	+		GFF1753	0.21	-1.8
1,781,704	+		GFF1753	0.21	-1.1
1,781,704	+		GFF1753	0.21	+0.9
1,781,704	+		GFF1753	0.21	-0.1
1,781,704	+		GFF1753	0.21	-0.5
1,781,704	+		GFF1753	0.21	-0.9
1,781,712	-		GFF1753	0.22	+0.8
1,781,712	-		GFF1753	0.22	-0.6
1,781,712	-		GFF1753	0.22	-1.1
1,781,712	-		GFF1753	0.22	-0.1
1,781,712	-		GFF1753	0.22	-1.3
1,781,719	+		GFF1753	0.22	-2.6
1,781,727	-		GFF1753	0.23	+0.3
1,781,749	+		GFF1753	0.26	-1.5
1,781,749	+		GFF1753	0.26	-0.1
1,781,757	-		GFF1753	0.27	-0.2
1,781,772	+		GFF1753	0.28	-1.8
1,781,778	+		GFF1753	0.29	-0.0
1,781,780	-		GFF1753	0.29	-1.1
1,781,783	+		GFF1753	0.30	-2.0
1,781,858	+		GFF1753	0.38	+0.6
1,781,858	+		GFF1753	0.38	-0.1
1,781,858	+		GFF1753	0.38	+0.8
1,781,862	-		GFF1753	0.39	-1.8
1,781,863	+		GFF1753	0.39	-1.1
1,781,863	+		GFF1753	0.39	-0.1
1,781,866	-		GFF1753	0.39	-2.1
1,781,866	-		GFF1753	0.39	+0.4
1,781,870	+		GFF1753	0.40	+1.2
1,781,910	+		GFF1753	0.44	-1.1
1,781,911	+		GFF1753	0.44	-0.2
1,781,911	+		GFF1753	0.44	+0.9
1,781,911	+		GFF1753	0.44	+0.7
1,781,943	-		GFF1753	0.48	+0.4
1,781,951	+		GFF1753	0.49	+0.5
1,781,958	+		GFF1753	0.49	-0.3
1,781,970	+		GFF1753	0.51	-0.8
1,781,976	-		GFF1753	0.52	+0.8
1,781,986	+		GFF1753	0.53	-1.6
1,781,998	+		GFF1753	0.54	+1.0
1,781,999	-		GFF1753	0.54	-1.3
1,782,001	-		GFF1753	0.54	-0.5
1,782,057	+		GFF1753	0.61	+0.1
1,782,093	+		GFF1753	0.65	-1.0
1,782,098	-		GFF1753	0.65	+0.2
1,782,105	-		GFF1753	0.66	-1.8
1,782,110	-		GFF1753	0.67	-2.1
1,782,122	-		GFF1753	0.68	-1.6
1,782,136	+		GFF1753	0.70	+0.6
1,782,149	+		GFF1753	0.71	+0.4
1,782,182	+		GFF1753	0.75	+1.0
1,782,182	+		GFF1753	0.75	-1.0
1,782,182	+		GFF1753	0.75	-2.0
1,782,185	-		GFF1753	0.75	-1.1
1,782,190	-		GFF1753	0.76	-2.0
1,782,190	-		GFF1753	0.76	-1.8
1,782,190	-		GFF1753	0.76	-2.0
1,782,190	-		GFF1753	0.76	-1.2
1,782,190	-		GFF1753	0.76	-0.3
1,782,190	-		GFF1753	0.76	-0.5
1,782,192	+		GFF1753	0.76	+0.8
1,782,227	-		GFF1753	0.80	-0.4
1,782,229	+		GFF1753	0.80	-0.3
1,782,237	-		GFF1753	0.81	+0.7
1,782,239	+		GFF1753	0.81	-0.7
1,782,239	+		GFF1753	0.81	-1.8
1,782,239	+		GFF1753	0.81	+0.6
1,782,239	+		GFF1753	0.81	-1.1
1,782,239	+		GFF1753	0.81	+0.9
1,782,239	+		GFF1753	0.81	-0.2
1,782,244	+		GFF1753	0.82	-0.4
1,782,244	+		GFF1753	0.82	+1.7
1,782,247	-		GFF1753	0.82	-1.5
1,782,247	-		GFF1753	0.82	-0.3
1,782,247	-		GFF1753	0.82	+0.6
1,782,247	-		GFF1753	0.82	-0.6
1,782,251	+		GFF1753	0.83	+0.5
1,782,252	-		GFF1753	0.83	+1.6
1,782,265	+		GFF1753	0.84	+0.0
1,782,308	+		GFF1753	0.89	-0.3
1,782,451	+				+0.4
1,782,459	-				+1.5
1,782,459	-				-0.1
1,782,502	+				-0.5
1,782,502	+				-0.3
1,782,507	+		GFF1754	0.10	+0.6
1,782,507	+		GFF1754	0.10	-1.4
1,782,507	+		GFF1754	0.10	+0.6
1,782,507	+		GFF1754	0.10	-2.1
1,782,507	+		GFF1754	0.10	+1.4
1,782,507	+		GFF1754	0.10	+0.5
1,782,507	+		GFF1754	0.10	-2.1
1,782,507	+		GFF1754	0.10	-0.9
1,782,507	+		GFF1754	0.10	+0.1
1,782,507	+		GFF1754	0.10	+1.5
1,782,507	+		GFF1754	0.10	+0.5
1,782,507	+		GFF1754	0.10	+0.0
1,782,515	-		GFF1754	0.11	-0.5
1,782,515	-		GFF1754	0.11	+0.3
1,782,515	-		GFF1754	0.11	-1.3
1,782,515	-		GFF1754	0.11	+0.5
1,782,515	-		GFF1754	0.11	+0.8
1,782,515	-		GFF1754	0.11	-0.9
1,782,515	-		GFF1754	0.11	+1.6
1,782,515	-		GFF1754	0.11	-1.3
1,782,515	-		GFF1754	0.11	+0.5
1,782,561	+		GFF1754	0.16	+0.4
1,782,569	-		GFF1754	0.17	-1.4
1,782,580	+		GFF1754	0.18	-0.5
1,782,580	+		GFF1754	0.18	+1.0
1,782,580	+		GFF1754	0.18	+0.8
1,782,600	+		GFF1754	0.20	+0.0
1,782,600	+		GFF1754	0.20	+1.2
1,782,659	+		GFF1754	0.26	+1.8
1,782,659	+		GFF1754	0.26	-1.4
1,782,659	+		GFF1754	0.26	+0.3
1,782,667	-		GFF1754	0.27	+0.0
1,782,667	-		GFF1754	0.27	-0.5
1,782,688	+		GFF1754	0.29	-0.3
1,782,697	+		GFF1754	0.30	+0.5
1,782,705	-		GFF1754	0.31	+0.2
1,782,739	+		GFF1754	0.35	+0.5
1,782,762	+		GFF1754	0.37	+0.5
1,782,767	+		GFF1754	0.38	-0.7
1,782,770	-		GFF1754	0.38	+0.2
1,782,775	-		GFF1754	0.39	-2.3
1,782,859	+		GFF1754	0.48	+0.3
1,782,859	+		GFF1754	0.48	-0.9
1,782,859	+		GFF1754	0.48	-0.1
1,782,859	+		GFF1754	0.48	-0.3
1,782,864	+		GFF1754	0.48	-1.1
1,782,867	-		GFF1754	0.49	+1.4
1,782,876	+		GFF1754	0.50	+1.1
1,782,884	-		GFF1754	0.51	+0.3
1,782,899	-		GFF1754	0.52	+1.0
1,782,965	-		GFF1754	0.59	-0.9
1,782,969	+		GFF1754	0.60	+0.4
1,782,976	+		GFF1754	0.60	+0.4
1,782,977	-		GFF1754	0.61	-0.7
1,782,989	-		GFF1754	0.62	+0.1
1,782,989	-		GFF1754	0.62	-0.5
1,783,002	+		GFF1754	0.63	-0.9
1,783,002	+		GFF1754	0.63	-1.1
1,783,003	-		GFF1754	0.63	+0.7
1,783,015	+		GFF1754	0.65	-1.9
1,783,021	+		GFF1754	0.65	-3.1
1,783,029	-		GFF1754	0.66	-0.4
1,783,085	+		GFF1754	0.72	-0.3
1,783,089	-		GFF1754	0.73	-0.7
1,783,105	+		GFF1754	0.74	-0.9
1,783,124	+		GFF1754	0.76	+1.0
1,783,152	+		GFF1754	0.79	+0.5
1,783,160	-		GFF1754	0.80	-1.4
1,783,162	+		GFF1754	0.80	+1.3
1,783,165	-		GFF1754	0.81	-1.5
1,783,165	-		GFF1754	0.81	+0.4
1,783,183	+		GFF1754	0.83	+0.2
1,783,193	+		GFF1754	0.84	-0.3
1,783,193	+		GFF1754	0.84	+0.0
1,783,202	+		GFF1754	0.85	+0.5
1,783,233	-		GFF1754	0.88	+0.4
1,783,240	+		GFF1754	0.89	-1.6
1,783,245	+		GFF1754	0.89	+0.0
1,783,248	-		GFF1754	0.90	-1.1
1,783,248	-		GFF1754	0.90	+0.3
1,783,253	-				-0.2
1,783,253	-				-0.2
1,783,253	-				-0.2
1,783,317	+				-0.8
1,783,325	-				-0.7
1,783,325	-				+0.4
1,783,330	+				+0.4
1,783,338	-				+0.6
1,783,357	+				+0.4
1,783,464	+				+0.2
1,783,566	+				-1.4
1,783,566	+				+1.0
1,783,579	-				-0.6
1,783,581	+				+0.5
1,783,656	-		GFF1755	0.16	+0.7
1,783,682	-		GFF1755	0.19	-1.6
1,783,689	+		GFF1755	0.20	-0.7
1,783,702	+		GFF1755	0.21	-1.8
1,783,724	-		GFF1755	0.23	+0.5
1,783,728	-		GFF1755	0.23	-1.8
1,783,729	+		GFF1755	0.23	+0.8
1,783,730	-		GFF1755	0.23	+0.0
1,783,731	-		GFF1755	0.24	+0.9
1,783,755	+		GFF1755	0.26	-2.3
1,783,763	-		GFF1755	0.27	-0.1
1,783,802	+		GFF1755	0.30	-0.8
1,783,802	+		GFF1755	0.30	-1.1
1,783,810	-		GFF1755	0.31	+1.1
1,783,870	-		GFF1755	0.37	+2.0
1,783,889	+		GFF1755	0.39	+0.2
1,783,897	-		GFF1755	0.39	-1.8
1,783,902	+		GFF1755	0.40	-1.8
1,783,902	+		GFF1755	0.40	-1.2
1,783,902	+		GFF1755	0.40	-0.6
1,783,902	+		GFF1755	0.40	+0.0
1,783,902	+		GFF1755	0.40	+0.3
1,783,902	+		GFF1755	0.40	+0.5
1,783,905	-		GFF1755	0.40	-0.2
1,783,910	-		GFF1755	0.41	+0.5
1,783,910	-		GFF1755	0.41	+0.9
1,783,910	-		GFF1755	0.41	+0.9
1,783,910	-		GFF1755	0.41	-1.6
1,783,910	-		GFF1755	0.41	-0.3
1,783,956	-		GFF1755	0.45	+0.0
1,783,963	+		GFF1755	0.46	+0.4
1,783,971	+		GFF1755	0.46	+1.0
1,783,971	-		GFF1755	0.46	-0.1
1,783,979	-		GFF1755	0.47	+1.0
1,783,981	-		GFF1755	0.47	-0.0
1,784,023	+		GFF1755	0.51	-0.0
1,784,035	+		GFF1755	0.52	+0.5
1,784,050	+		GFF1755	0.54	-1.3
1,784,050	+		GFF1755	0.54	+1.1
1,784,050	+		GFF1755	0.54	+0.2
1,784,050	+		GFF1755	0.54	-1.8
1,784,050	+		GFF1755	0.54	-1.5
1,784,050	+		GFF1755	0.54	-0.2
1,784,051	-		GFF1755	0.54	+1.1
1,784,055	+		GFF1755	0.54	-0.4
1,784,058	-		GFF1755	0.55	+1.4
1,784,058	-		GFF1755	0.55	-0.1
1,784,058	-		GFF1755	0.55	+0.8
1,784,058	-		GFF1755	0.55	+0.2
1,784,062	-		GFF1755	0.55	-0.3
1,784,070	-		GFF1755	0.56	+0.3
1,784,136	-		GFF1755	0.62	-1.2
1,784,171	+		GFF1755	0.65	-0.6
1,784,175	-		GFF1755	0.66	-0.2
1,784,184	+		GFF1755	0.66	+0.9
1,784,207	+		GFF1755	0.69	-1.5
1,784,227	+		GFF1755	0.71	-1.2
1,784,227	+		GFF1755	0.71	-0.3
1,784,227	+		GFF1755	0.71	-3.0
1,784,227	+		GFF1755	0.71	+0.4
1,784,227	+		GFF1755	0.71	-0.3
1,784,227	+		GFF1755	0.71	+0.7
1,784,227	+		GFF1755	0.71	-1.1
1,784,227	+		GFF1755	0.71	+0.2
1,784,227	+		GFF1755	0.71	+0.4
1,784,235	-		GFF1755	0.71	+1.4
1,784,235	-		GFF1755	0.71	-1.7
1,784,235	-		GFF1755	0.71	-2.3
1,784,235	-		GFF1755	0.71	-0.1
1,784,235	-		GFF1755	0.71	-1.1
1,784,235	-		GFF1755	0.71	+0.6
1,784,235	-		GFF1755	0.71	-1.2
1,784,235	-		GFF1755	0.71	+0.1
1,784,235	-		GFF1755	0.71	+0.3
1,784,235	-		GFF1755	0.71	-1.3
1,784,247	+		GFF1755	0.72	+1.0
1,784,247	+		GFF1755	0.72	-1.5
1,784,247	+		GFF1755	0.72	-1.0
1,784,250	-		GFF1755	0.73	+1.0
1,784,250	-		GFF1755	0.73	-1.0
1,784,255	-		GFF1755	0.73	-1.1
1,784,278	-		GFF1755	0.75	-2.3
1,784,295	-		GFF1755	0.77	+0.5
1,784,319	+		GFF1755	0.79	-0.9
1,784,319	+		GFF1755	0.79	+0.6
1,784,319	+		GFF1755	0.79	-0.9
1,784,319	+		GFF1755	0.79	-0.1
1,784,319	+		GFF1755	0.79	-0.3
1,784,327	-		GFF1755	0.80	-2.3
1,784,327	-		GFF1755	0.80	-1.1
1,784,327	-		GFF1755	0.80	+0.3