Strain Fitness in Sphingobium sp. HT1-2 around GFF2411

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,429,934	+				-0.2
2,429,934	+				+0.9
2,429,935	-				-0.8
2,429,939	+				-0.7
2,429,942	-				+0.0
2,430,017	+		GFF2409	0.40	-0.7
2,430,023	+		GFF2409	0.43	-1.3
2,430,028	-		GFF2409	0.46	+0.1
2,430,031	-		GFF2409	0.48	+0.7
2,430,078	-		GFF2409	0.75	-2.5
2,430,092	+		GFF2409	0.84	+0.6
2,430,112	-				-0.3
2,430,121	-				-0.3
2,430,139	+				-1.3
2,430,148	+				+0.4
2,430,148	+				+0.6
2,430,148	+				+1.5
2,430,235	+				-1.3
2,430,254	+				-0.6
2,430,262	+				-1.9
2,430,278	-				-1.2
2,430,308	+				-1.5
2,430,457	-		GFF2410	0.37	-0.0
2,430,471	-		GFF2410	0.40	-1.0
2,430,496	+		GFF2410	0.45	-1.6
2,430,496	-		GFF2410	0.45	-0.5
2,430,537	+		GFF2410	0.54	+0.0
2,430,577	+		GFF2410	0.62	+0.5
2,430,594	+		GFF2410	0.65	+0.8
2,430,598	-		GFF2410	0.66	-1.7
2,430,636	+		GFF2410	0.74	-0.1
2,430,644	-		GFF2410	0.76	-2.3
2,430,644	-		GFF2410	0.76	-1.7
2,430,644	-		GFF2410	0.76	-0.3
2,430,656	+		GFF2410	0.78	+0.5
2,430,656	-		GFF2410	0.78	+0.2
2,430,705	+		GFF2410	0.89	-1.2
2,430,710	+		GFF2410	0.90	+0.6
2,430,713	-				-1.0
2,430,738	+				-0.1
2,430,744	+				-0.7
2,430,744	+				-2.3
2,430,744	+				+1.1
2,430,744	+				+0.3
2,430,744	+				-1.7
2,430,744	+				-0.6
2,430,745	+				-0.9
2,430,752	-				-0.1
2,430,752	-				+0.4
2,430,752	-				-1.3
2,430,763	-				+0.2
2,430,788	+				+0.6
2,430,793	+				-0.2
2,430,796	-				+1.9
2,430,799	+				-0.0
2,430,801	-				-1.9
2,430,805	-				-0.7
2,430,807	-				-0.5
2,430,807	-				+0.4
2,430,809	-				-1.4
2,430,809	-				-0.6
2,430,809	-				-0.0
2,430,815	-				-0.7
2,430,820	+				+0.3
2,430,825	+				-0.5
2,430,831	+				-1.7
2,430,836	+				-0.3
2,430,836	+				+0.2
2,430,836	+				-0.0
2,430,844	-				-1.4
2,430,853	-				-1.6
2,430,856	+				+0.4
2,430,864	-				-1.3
2,430,864	-				+0.6
2,430,864	-				+0.6
2,430,864	-				-0.2
2,430,870	+				+0.1
2,430,870	+				-0.7
2,430,887	+				+0.2
2,430,887	+				-0.1
2,430,892	+				-0.1
2,430,895	-				-0.1
2,430,913	+				-1.8
2,430,924	+				-0.8
2,430,935	+		GFF2411	0.11	+0.6
2,430,935	+		GFF2411	0.11	-0.6
2,430,935	+		GFF2411	0.11	-0.6
2,430,937	-		GFF2411	0.12	-1.5
2,430,952	+		GFF2411	0.15	-0.5
2,430,952	+		GFF2411	0.15	+0.6
2,430,960	-		GFF2411	0.17	-0.8
2,430,960	-		GFF2411	0.17	-0.3
2,430,963	+		GFF2411	0.18	+0.3
2,430,963	+		GFF2411	0.18	+0.4
2,430,963	+		GFF2411	0.18	-0.6
2,430,963	+		GFF2411	0.18	+0.6
2,430,971	-		GFF2411	0.20	+0.4
2,430,971	-		GFF2411	0.20	+1.1
2,430,971	-		GFF2411	0.20	-0.7
2,430,976	-		GFF2411	0.21	+0.4
2,430,985	+		GFF2411	0.24	-2.1
2,431,004	-		GFF2411	0.28	-1.2
2,431,008	-		GFF2411	0.29	-0.3
2,431,014	-		GFF2411	0.31	-0.4
2,431,025	+		GFF2411	0.33	+0.7
2,431,025	+		GFF2411	0.33	-2.2
2,431,025	+		GFF2411	0.33	-2.0
2,431,033	-		GFF2411	0.35	-0.3
2,431,033	-		GFF2411	0.35	-0.4
2,431,033	-		GFF2411	0.35	-0.0
2,431,033	-		GFF2411	0.35	-1.4
2,431,041	+		GFF2411	0.37	-2.0
2,431,047	-		GFF2411	0.39	+0.6
2,431,054	+		GFF2411	0.40	-1.2
2,431,069	+		GFF2411	0.44	+0.6
2,431,069	+		GFF2411	0.44	-0.2
2,431,075	+		GFF2411	0.46	-0.1
2,431,077	-		GFF2411	0.46	-0.6
2,431,093	+		GFF2411	0.50	+0.5
2,431,093	+		GFF2411	0.50	+0.8
2,431,093	+		GFF2411	0.50	-0.9
2,431,093	+		GFF2411	0.50	-0.2
2,431,093	+		GFF2411	0.50	-1.9
2,431,101	-		GFF2411	0.52	+0.0
2,431,101	-		GFF2411	0.52	+0.5
2,431,101	-		GFF2411	0.52	-0.6
2,431,101	-		GFF2411	0.52	-0.7
2,431,101	-		GFF2411	0.52	-0.7
2,431,101	-		GFF2411	0.52	-0.4
2,431,101	-		GFF2411	0.52	+0.4
2,431,120	-		GFF2411	0.57	-1.8
2,431,126	-		GFF2411	0.58	-1.6
2,431,143	-		GFF2411	0.62	-0.7
2,431,145	-		GFF2411	0.63	+0.4
2,431,171	-		GFF2411	0.69	+0.3
2,431,172	-		GFF2411	0.69	-0.2
2,431,194	+		GFF2411	0.75	-2.0
2,431,195	-		GFF2411	0.75	+0.0
2,431,260	-				+0.7
2,431,265	-				+0.8
2,431,281	+				+0.2
2,431,281	+				+0.6
2,431,281	+				-0.2
2,431,283	+				-0.9
2,431,289	-				-0.6
2,431,289	-				-0.7
2,431,293	+				-1.7
2,431,293	+				-1.6
2,431,313	+				-0.3
2,431,313	+				-1.6
2,431,314	+				-0.9
2,431,324	+				+0.0
2,431,325	-				+0.2
2,431,332	+				+0.5
2,431,332	+				-0.6
2,431,332	+				-0.2
2,431,332	-				+1.5
2,431,340	-				+0.7
2,431,351	-				+1.2
2,431,353	-				+0.3
2,431,355	+				-0.6
2,431,355	+				-0.4
2,431,355	+				+1.3
2,431,355	+				-0.7
2,431,355	+				-0.8
2,431,357	+				+0.8
2,431,363	-				+0.8
2,431,363	-				+0.2
2,431,371	+				-1.6
2,431,451	-		GFF2412	0.40	-2.5
2,431,451	-		GFF2412	0.40	-1.5
2,431,452	+		GFF2412	0.40	+0.4
2,431,455	-		GFF2412	0.42	-2.0
2,431,455	-		GFF2412	0.42	+0.1
2,431,460	-		GFF2412	0.45	+0.2
2,431,478	+		GFF2412	0.54	+0.2
2,431,481	-		GFF2412	0.56	-0.4
2,431,486	-		GFF2412	0.59	+0.2
2,431,486	-		GFF2412	0.59	-2.4
2,431,491	+		GFF2412	0.61	+0.7
2,431,494	+		GFF2412	0.63	+1.2
2,431,496	+		GFF2412	0.64	-0.7
2,431,496	+		GFF2412	0.64	+0.8
2,431,496	+		GFF2412	0.64	-0.8
2,431,499	-		GFF2412	0.66	-0.4
2,431,504	-		GFF2412	0.68	+1.2
2,431,540	+		GFF2412	0.88	-1.0
2,431,579	+				+1.6
2,431,615	+				+1.6
2,431,615	+				-1.3
2,431,616	+				+1.5
2,431,625	+				-0.8
2,431,633	-				+0.6
2,431,633	-				+0.7
2,431,633	-				+0.3
2,431,633	-				+0.8
2,431,635	+				+0.7
2,431,635	+				-0.5
2,431,635	+				-0.3
2,431,636	+				+1.4
2,431,643	-				+0.1
2,431,664	+				-1.3
2,431,664	-				+0.1
2,431,672	-				+0.4
2,431,680	+				+1.1
2,431,680	+				+0.1
2,431,701	-				+1.2
2,431,739	-		GFF2413	0.27	+0.5
2,431,788	-		GFF2413	0.57	+0.4
2,431,802	+		GFF2413	0.65	+0.2
2,431,802	+		GFF2413	0.65	+0.8
2,431,808	+		GFF2413	0.69	-0.2
2,431,826	-		GFF2413	0.80	-0.4
2,431,826	-		GFF2413	0.80	-0.1
2,431,847	+				+1.0
2,431,848	+				-1.4
2,431,856	-				-1.0
2,431,866	-				+1.5
2,431,946	+				+0.1
2,431,954	-				-2.4
2,431,961	-				-1.9
2,431,964	+				-0.3
2,431,974	-				-0.4
2,431,998	+				-0.5
2,432,026	+				-0.8
2,432,034	-				+0.2
2,432,060	+				-0.9
2,432,060	+				-0.2
2,432,068	-				-0.2
2,432,068	-				+0.1
2,432,068	-				+0.4
2,432,085	+		GFF2414	0.10	+0.8
2,432,117	-		GFF2414	0.12	-0.2
2,432,124	-		GFF2414	0.13	+0.4
2,432,131	+		GFF2414	0.13	+0.1
2,432,131	+		GFF2414	0.13	+0.7
2,432,136	+		GFF2414	0.14	+0.2
2,432,136	+		GFF2414	0.14	+0.0
2,432,139	-		GFF2414	0.14	+0.4
2,432,144	-		GFF2414	0.14	-0.7
2,432,149	-		GFF2414	0.15	+1.0
2,432,171	-		GFF2414	0.16	+1.9
2,432,171	-		GFF2414	0.16	+0.3
2,432,204	-		GFF2414	0.18	-0.8
2,432,230	+		GFF2414	0.20	-0.3
2,432,243	+		GFF2414	0.21	+0.1
2,432,243	+		GFF2414	0.21	-1.5
2,432,253	+		GFF2414	0.22	-2.0
2,432,258	+		GFF2414	0.22	-3.0
2,432,261	-		GFF2414	0.22	+0.3
2,432,264	+		GFF2414	0.22	+1.0
2,432,266	-		GFF2414	0.23	+0.2
2,432,269	+		GFF2414	0.23	-1.2
2,432,272	-		GFF2414	0.23	-1.2
2,432,289	-		GFF2414	0.24	-1.7