Strain Fitness in Sphingobium sp. HT1-2 around GFF1417

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,446,718	-		GFF1415	0.83	-1.4
1,446,718	-		GFF1415	0.83	+0.3
1,446,720	+		GFF1415	0.84	+1.6
1,446,728	+		GFF1415	0.84	+0.9
1,446,735	-		GFF1415	0.85	-1.3
1,446,736	-		GFF1415	0.85	-0.2
1,446,736	-		GFF1415	0.85	-0.3
1,446,747	-		GFF1415	0.85	+0.4
1,446,747	-		GFF1415	0.85	-2.1
1,446,756	+		GFF1415	0.86	-0.2
1,446,757	+		GFF1415	0.86	-0.0
1,446,757	+		GFF1415	0.86	+0.1
1,446,757	-		GFF1415	0.86	-1.8
1,446,761	+		GFF1415	0.86	-1.8
1,446,765	-		GFF1415	0.86	+0.0
1,446,792	+		GFF1415	0.88	-1.1
1,446,792	+		GFF1415	0.88	-1.0
1,446,792	+		GFF1415	0.88	-1.4
1,446,799	+		GFF1415	0.88	-0.2
1,446,800	-		GFF1415	0.89	-2.0
1,446,800	-		GFF1415	0.89	-0.7
1,446,801	+		GFF1415	0.89	+0.9
1,446,807	-		GFF1415	0.89	-0.0
1,446,807	-		GFF1415	0.89	+0.0
1,446,809	-		GFF1415	0.89	-1.4
1,446,818	+		GFF1415	0.90	-0.2
1,446,826	-				-0.0
1,446,843	-				+0.2
1,446,846	+				-0.6
1,446,872	-				-1.0
1,446,882	+				-0.0
1,446,889	+				-0.9
1,446,889	+				-0.4
1,446,889	+				+0.2
1,446,890	-				+0.7
1,446,892	-				-2.1
1,446,893	+				+1.1
1,446,897	-				+0.0
1,446,897	-				-0.7
1,446,900	-				-0.3
1,446,901	-				+0.1
1,446,909	-				+1.0
1,446,911	+				-0.0
1,446,935	+				+0.1
1,446,947	+				+0.7
1,446,953	+				-0.6
1,446,953	+				+0.9
1,446,953	+				-1.6
1,446,953	+				-0.6
1,446,953	+				-0.2
1,446,953	+				-1.3
1,446,953	+				-0.8
1,446,953	+				+0.3
1,446,953	+				-0.6
1,446,953	+				-1.0
1,446,953	+				+0.2
1,446,953	+				-0.7
1,446,953	+				-0.8
1,446,955	-				-0.3
1,446,961	-				+0.2
1,446,961	-				+0.6
1,446,961	-				-2.2
1,446,961	-				-2.7
1,446,961	-				-0.6
1,446,961	-				-0.4
1,446,961	-				-0.2
1,446,961	-				-1.7
1,446,961	-				-0.3
1,446,961	-				-2.0
1,446,961	-				-2.7
1,446,971	-				-0.3
1,446,983	+				-0.9
1,446,991	-				+0.5
1,446,991	-				+1.3
1,446,991	-				-0.1
1,446,992	+				-0.1
1,447,000	-				+0.1
1,447,055	+		GFF1416	0.11	-2.6
1,447,055	+		GFF1416	0.11	-0.1
1,447,055	+		GFF1416	0.11	-1.7
1,447,063	-		GFF1416	0.13	-1.0
1,447,063	-		GFF1416	0.13	-0.1
1,447,063	-		GFF1416	0.13	-0.3
1,447,063	-		GFF1416	0.13	+0.6
1,447,063	-		GFF1416	0.13	-2.3
1,447,063	-		GFF1416	0.13	-0.9
1,447,089	+		GFF1416	0.17	-0.9
1,447,089	+		GFF1416	0.17	+0.4
1,447,097	-		GFF1416	0.18	+1.0
1,447,097	-		GFF1416	0.18	-0.4
1,447,171	+		GFF1416	0.30	-0.2
1,447,171	+		GFF1416	0.30	+1.4
1,447,171	+		GFF1416	0.30	+0.7
1,447,171	+		GFF1416	0.30	+0.9
1,447,171	+		GFF1416	0.30	-0.5
1,447,179	-		GFF1416	0.31	+0.3
1,447,181	+		GFF1416	0.31	+0.3
1,447,181	+		GFF1416	0.31	-1.4
1,447,181	+		GFF1416	0.31	+0.1
1,447,181	+		GFF1416	0.31	-0.6
1,447,181	+		GFF1416	0.31	-1.7
1,447,181	+		GFF1416	0.31	+0.4
1,447,181	+		GFF1416	0.31	-1.3
1,447,181	+		GFF1416	0.31	-1.4
1,447,181	+		GFF1416	0.31	+0.8
1,447,181	+		GFF1416	0.31	+0.1
1,447,189	-		GFF1416	0.33	+0.5
1,447,189	-		GFF1416	0.33	-1.2
1,447,189	-		GFF1416	0.33	+1.0
1,447,189	-		GFF1416	0.33	+0.2
1,447,189	-		GFF1416	0.33	+0.4
1,447,191	+		GFF1416	0.33	+1.3
1,447,191	+		GFF1416	0.33	+1.5
1,447,199	-		GFF1416	0.34	-0.9
1,447,226	+		GFF1416	0.38	+0.3
1,447,226	+		GFF1416	0.38	-0.8
1,447,234	-		GFF1416	0.40	+0.6
1,447,234	-		GFF1416	0.40	-1.0
1,447,242	-		GFF1416	0.41	+0.2
1,447,283	+		GFF1416	0.47	+0.8
1,447,283	+		GFF1416	0.47	+0.3
1,447,283	+		GFF1416	0.47	-1.1
1,447,291	+		GFF1416	0.49	+1.2
1,447,291	-		GFF1416	0.49	+0.3
1,447,291	-		GFF1416	0.49	-1.0
1,447,291	-		GFF1416	0.49	-0.8
1,447,291	-		GFF1416	0.49	-1.0
1,447,291	-		GFF1416	0.49	-1.0
1,447,291	-		GFF1416	0.49	+1.2
1,447,291	-		GFF1416	0.49	-0.2
1,447,307	-		GFF1416	0.51	-0.5
1,447,326	+		GFF1416	0.54	-0.1
1,447,334	-		GFF1416	0.56	-0.4
1,447,357	-		GFF1416	0.59	-2.6
1,447,357	-		GFF1416	0.59	-0.6
1,447,362	+		GFF1416	0.60	-0.9
1,447,362	+		GFF1416	0.60	-1.6
1,447,367	+		GFF1416	0.61	-1.5
1,447,370	-		GFF1416	0.61	+0.2
1,447,372	+		GFF1416	0.62	-1.4
1,447,420	-		GFF1416	0.69	-0.4
1,447,431	+		GFF1416	0.71	+0.4
1,447,444	-		GFF1416	0.73	-2.2
1,447,473	-		GFF1416	0.78	+1.4
1,447,522	+		GFF1416	0.85	-0.2
1,447,523	+		GFF1416	0.86	-0.2
1,447,523	+		GFF1416	0.86	-0.1
1,447,523	+		GFF1416	0.86	-1.1
1,447,523	+		GFF1416	0.86	-1.8
1,447,523	+		GFF1416	0.86	-0.5
1,447,523	+		GFF1416	0.86	-0.2
1,447,528	+		GFF1416	0.86	-1.8
1,447,531	-		GFF1416	0.87	+0.2
1,447,602	+				-0.1
1,447,623	-				-0.4
1,447,627	+				-0.3
1,447,668	+				-1.8
1,447,680	+				-2.4
1,447,698	-				-1.5
1,447,699	+				-1.7
1,447,699	+				+0.8
1,447,700	-				-0.3
1,447,730	-				-0.3
1,447,733	+				-0.9
1,447,755	+				-1.3
1,447,755	+				+0.3
1,447,755	+				-0.9
1,447,755	+				-0.3
1,447,755	+				+0.9
1,447,755	+				+0.0
1,447,763	-				+0.6
1,447,763	-				-0.4
1,447,806	+		GFF1417	0.12	-1.0
1,447,806	+		GFF1417	0.12	-1.0
1,447,814	-		GFF1417	0.13	+0.8
1,447,814	-		GFF1417	0.13	-1.1
1,447,821	+		GFF1417	0.14	+0.6
1,447,821	+		GFF1417	0.14	-0.2
1,447,829	-		GFF1417	0.15	-0.6
1,447,829	-		GFF1417	0.15	-0.3
1,447,836	+		GFF1417	0.16	-1.2
1,447,869	+		GFF1417	0.20	-0.8
1,447,877	-		GFF1417	0.21	-2.0
1,447,877	-		GFF1417	0.21	+0.3
1,447,909	-		GFF1417	0.25	+1.0
1,447,928	-		GFF1417	0.28	+0.6
1,447,928	-		GFF1417	0.28	+0.2
1,447,950	+		GFF1417	0.30	-1.2
1,447,964	+		GFF1417	0.32	+1.2
1,447,975	+		GFF1417	0.34	+0.6
1,447,986	+		GFF1417	0.35	-0.0
1,448,000	-		GFF1417	0.37	-0.7
1,448,000	-		GFF1417	0.37	-0.4
1,448,002	+		GFF1417	0.37	+0.7
1,448,004	+		GFF1417	0.37	-0.7
1,448,008	-		GFF1417	0.38	-0.3
1,448,012	-		GFF1417	0.38	-0.4
1,448,022	-		GFF1417	0.40	-1.0
1,448,022	-		GFF1417	0.40	+0.3
1,448,033	+		GFF1417	0.41	+0.2
1,448,063	+		GFF1417	0.45	+0.6
1,448,063	+		GFF1417	0.45	-0.8
1,448,103	+		GFF1417	0.50	+0.6
1,448,103	+		GFF1417	0.50	-1.8
1,448,103	+		GFF1417	0.50	-0.3
1,448,103	+		GFF1417	0.50	-0.2
1,448,103	+		GFF1417	0.50	-0.2
1,448,103	+		GFF1417	0.50	-0.7
1,448,103	+		GFF1417	0.50	+1.3
1,448,103	+		GFF1417	0.50	+0.3
1,448,103	+		GFF1417	0.50	-1.6
1,448,103	+		GFF1417	0.50	-1.2
1,448,103	+		GFF1417	0.50	-0.7
1,448,103	+		GFF1417	0.50	+0.6
1,448,103	+		GFF1417	0.50	-1.9
1,448,103	+		GFF1417	0.50	-1.1
1,448,110	-		GFF1417	0.51	-0.7
1,448,111	-		GFF1417	0.51	+0.0
1,448,111	-		GFF1417	0.51	+0.7
1,448,111	-		GFF1417	0.51	-1.0
1,448,111	-		GFF1417	0.51	+0.7
1,448,111	-		GFF1417	0.51	+0.3
1,448,111	-		GFF1417	0.51	-0.7
1,448,111	-		GFF1417	0.51	-1.2
1,448,111	-		GFF1417	0.51	-0.6
1,448,111	-		GFF1417	0.51	-1.0
1,448,111	-		GFF1417	0.51	-2.3
1,448,111	-		GFF1417	0.51	-0.4
1,448,113	+		GFF1417	0.51	-0.4
1,448,113	+		GFF1417	0.51	-0.1
1,448,113	+		GFF1417	0.51	-0.8
1,448,121	-		GFF1417	0.52	-0.7
1,448,121	-		GFF1417	0.52	+1.0
1,448,126	-		GFF1417	0.53	-1.5
1,448,126	-		GFF1417	0.53	+0.1
1,448,173	+		GFF1417	0.59	+0.2
1,448,173	+		GFF1417	0.59	+1.3
1,448,173	+		GFF1417	0.59	-0.1
1,448,173	+		GFF1417	0.59	+0.3
1,448,173	+		GFF1417	0.59	-0.2
1,448,173	+		GFF1417	0.59	-0.5
1,448,173	+		GFF1417	0.59	+1.6
1,448,173	+		GFF1417	0.59	-0.9
1,448,173	-		GFF1417	0.59	-1.2
1,448,175	+		GFF1417	0.59	+0.5
1,448,181	-		GFF1417	0.60	-0.1
1,448,181	-		GFF1417	0.60	-1.1
1,448,181	-		GFF1417	0.60	-0.5
1,448,181	-		GFF1417	0.60	-0.5
1,448,181	-		GFF1417	0.60	-1.3
1,448,184	+		GFF1417	0.60	+0.3
1,448,218	-		GFF1417	0.65	+0.8
1,448,219	+		GFF1417	0.65	+0.4
1,448,219	+		GFF1417	0.65	-0.1
1,448,219	+		GFF1417	0.65	-1.7
1,448,243	-		GFF1417	0.68	+1.0
1,448,249	-		GFF1417	0.69	+0.8
1,448,270	+		GFF1417	0.71	-0.0
1,448,288	-		GFF1417	0.74	-0.1
1,448,293	-		GFF1417	0.74	+0.0
1,448,314	+		GFF1417	0.77	-0.3
1,448,378	+		GFF1417	0.85	+0.5
1,448,400	-		GFF1417	0.88	+0.4
1,448,413	+		GFF1417	0.90	-2.4
1,448,433	+				-0.5
1,448,433	+				-0.1
1,448,467	+				-0.0
1,448,467	+				-1.0
1,448,475	-				+1.1
1,448,475	-				-1.1
1,448,488	+				-1.5
1,448,551	-		GFF1418	0.11	-0.3
1,448,582	+		GFF1418	0.18	-0.7
1,448,582	+		GFF1418	0.18	+0.2
1,448,590	-		GFF1418	0.20	-0.9
1,448,590	-		GFF1418	0.20	+0.3
1,448,592	+		GFF1418	0.20	+0.5
1,448,600	-		GFF1418	0.22	-0.8
1,448,602	+		GFF1418	0.22	-0.3
1,448,602	+		GFF1418	0.22	-1.1
1,448,602	+		GFF1418	0.22	-1.4
1,448,610	-		GFF1418	0.24	+1.4
1,448,617	+		GFF1418	0.26	-0.3
1,448,617	+		GFF1418	0.26	-1.5
1,448,625	-		GFF1418	0.27	-0.5
1,448,640	-		GFF1418	0.31	+0.2
1,448,652	+		GFF1418	0.33	-0.7
1,448,652	+		GFF1418	0.33	-0.8
1,448,670	+		GFF1418	0.37	-0.2
1,448,672	+		GFF1418	0.37	-0.4
1,448,680	-		GFF1418	0.39	-1.6
1,448,680	-		GFF1418	0.39	+1.2
1,448,696	+		GFF1418	0.43	-0.1
1,448,696	+		GFF1418	0.43	-0.7
1,448,696	+		GFF1418	0.43	+1.2
1,448,704	-		GFF1418	0.44	-2.2
1,448,713	+		GFF1418	0.46	-1.1
1,448,732	+		GFF1418	0.50	-0.1
1,448,732	+		GFF1418	0.50	+1.1
1,448,732	+		GFF1418	0.50	-1.5
1,448,733	+		GFF1418	0.51	+0.4
1,448,733	+		GFF1418	0.51	-0.1
1,448,737	+		GFF1418	0.51	-1.4
1,448,740	-		GFF1418	0.52	+0.9
1,448,740	-		GFF1418	0.52	-1.2
1,448,740	-		GFF1418	0.52	-0.1
1,448,741	-		GFF1418	0.52	-0.3
1,448,741	-		GFF1418	0.52	-2.0
1,448,741	-		GFF1418	0.52	-0.3
1,448,744	+		GFF1418	0.53	+0.6
1,448,749	+		GFF1418	0.54	+0.4
1,448,757	-		GFF1418	0.56	+0.6
1,448,808	+		GFF1418	0.67	-0.2
1,448,811	-		GFF1418	0.67	-1.5
1,448,816	-		GFF1418	0.68	+0.2
1,448,816	-		GFF1418	0.68	-0.3
1,448,816	-		GFF1418	0.68	-2.4
1,448,816	-		GFF1418	0.68	-1.0
1,448,818	+		GFF1418	0.69	+0.0
1,448,818	+		GFF1418	0.69	-0.5
1,448,818	+		GFF1418	0.69	-1.6
1,448,823	+		GFF1418	0.70	-1.1
1,448,844	+		GFF1418	0.74	-1.7
1,448,856	-		GFF1418	0.77	-0.3
1,448,861	+		GFF1418	0.78	+0.1
1,448,878	+		GFF1418	0.82	+0.5
1,448,911	-		GFF1418	0.89	-0.7
1,448,919	+				-0.5
1,448,927	-				-0.3
1,448,933	-				-0.9
1,448,935	+				-0.9
1,448,963	+				-0.2
1,448,997	+				-1.6
1,449,005	-				+0.2
1,449,006	+				+0.2
1,449,011	+				+0.4
1,449,011	+				+0.4
1,449,011	+				+1.3
1,449,011	+				-0.2
1,449,011	+				-0.9
1,449,011	+				+0.7
1,449,011	+				-1.7
1,449,012	+				-1.4
1,449,014	-				+0.6
1,449,014	-				-0.4
1,449,019	-				+0.1
1,449,019	-				-0.8
1,449,019	-				-2.0
1,449,019	-				-1.5
1,449,019	-				-0.2
1,449,019	-				-0.2
1,449,019	-				-0.4
1,449,032	-				-0.5
1,449,042	-				-0.5
1,449,044	-				-0.7
1,449,066	-				-2.2
1,449,074	-				-0.5
1,449,082	+				-0.6
1,449,093	+				-0.6
1,449,093	+				+0.3
1,449,101	-				+0.6
1,449,101	-				-0.3
1,449,101	-				-0.6
1,449,101	-				-1.4
1,449,101	-				+0.1
1,449,101	-				+0.1
1,449,101	-				+0.6
1,449,101	-				-0.8
1,449,106	-				-0.0
1,449,106	-				-0.8
1,449,120	+				-2.5
1,449,128	-				+0.6
1,449,130	-		GFF1419	0.10	+1.1
1,449,133	-		GFF1419	0.11	-1.9
1,449,149	-		GFF1419	0.12	+0.9
1,449,169	-		GFF1419	0.15	-0.1
1,449,179	+		GFF1419	0.16	-1.0
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