Strain Fitness in Sphingobium sp. HT1-2 around GFF5272

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,259,504	+				+1.1
5,259,504	-				-0.0
5,259,512	-				+0.3
5,259,512	-				-0.1
5,259,524	+				+0.4
5,259,525	+				-0.7
5,259,525	-				-2.1
5,259,526	-				-0.4
5,259,530	+				-0.1
5,259,532	-				+0.1
5,259,532	-				-0.4
5,259,538	-				-1.8
5,259,540	+				+0.8
5,259,545	+				-1.1
5,259,548	-				-1.9
5,259,548	-				+2.1
5,259,548	-				+1.7
5,259,550	+				+1.0
5,259,569	-				-2.7
5,259,578	+				-0.1
5,259,584	+				+0.3
5,259,584	+				-0.1
5,259,584	+				-0.5
5,259,584	+				+0.2
5,259,586	+				+0.4
5,259,586	+				-0.1
5,259,586	-				+0.0
5,259,587	-				+0.7
5,259,592	-				-0.8
5,259,592	-				-2.6
5,259,592	-				-1.6
5,259,592	-				+0.4
5,259,592	-				+1.1
5,259,594	-				-0.2
5,259,594	-				-0.4
5,259,594	-				+2.0
5,259,596	+				-0.6
5,259,596	+				+0.7
5,259,596	+				+0.1
5,259,596	+				+0.6
5,259,596	+				+0.1
5,259,596	+				+1.2
5,259,596	+				-1.6
5,259,602	-				-0.3
5,259,604	-				-0.1
5,259,604	-				-0.0
5,259,604	-				+1.0
5,259,633	+		GFF5271	0.12	+1.5
5,259,633	+		GFF5271	0.12	-0.4
5,259,633	+		GFF5271	0.12	-0.1
5,259,633	+		GFF5271	0.12	+0.9
5,259,641	-		GFF5271	0.13	+0.6
5,259,641	-		GFF5271	0.13	+1.3
5,259,641	-		GFF5271	0.13	-0.2
5,259,641	-		GFF5271	0.13	-0.7
5,259,641	-		GFF5271	0.13	-1.1
5,259,641	-		GFF5271	0.13	+0.4
5,259,641	-		GFF5271	0.13	-0.2
5,259,641	-		GFF5271	0.13	-0.6
5,259,685	+		GFF5271	0.18	+0.0
5,259,689	+		GFF5271	0.19	-0.3
5,259,689	+		GFF5271	0.19	-0.5
5,259,692	-		GFF5271	0.19	-1.2
5,259,727	+		GFF5271	0.23	-0.0
5,259,751	-		GFF5271	0.26	-1.1
5,259,763	+		GFF5271	0.27	+0.2
5,259,764	+		GFF5271	0.27	-0.0
5,259,764	+		GFF5271	0.27	-0.8
5,259,764	+		GFF5271	0.27	-2.4
5,259,764	+		GFF5271	0.27	+0.7
5,259,771	-		GFF5271	0.28	+0.9
5,259,772	-		GFF5271	0.28	-1.9
5,259,772	-		GFF5271	0.28	+0.8
5,259,772	-		GFF5271	0.28	+0.4
5,259,779	+		GFF5271	0.29	-0.8
5,259,802	+		GFF5271	0.32	-0.2
5,259,810	-		GFF5271	0.32	-1.0
5,259,810	-		GFF5271	0.32	+0.6
5,259,810	-		GFF5271	0.32	-0.2
5,259,810	-		GFF5271	0.32	-0.9
5,259,810	-		GFF5271	0.32	-2.6
5,259,810	-		GFF5271	0.32	+0.3
5,259,815	-		GFF5271	0.33	-0.8
5,259,824	+		GFF5271	0.34	+1.6
5,259,826	-		GFF5271	0.34	+0.8
5,259,832	-		GFF5271	0.35	-1.8
5,259,832	-		GFF5271	0.35	+0.4
5,259,832	-		GFF5271	0.35	-1.8
5,259,852	+		GFF5271	0.37	+0.1
5,259,875	-		GFF5271	0.40	+0.4
5,259,880	-		GFF5271	0.40	+1.3
5,259,890	-		GFF5271	0.42	+0.5
5,259,909	+		GFF5271	0.44	-0.7
5,259,909	-		GFF5271	0.44	+0.1
5,259,939	-		GFF5271	0.47	-0.5
5,259,957	+		GFF5271	0.49	+0.0
5,259,963	+		GFF5271	0.50	-0.9
5,259,985	+		GFF5271	0.52	-0.8
5,259,985	+		GFF5271	0.52	+1.2
5,259,990	+		GFF5271	0.53	-0.3
5,259,993	-		GFF5271	0.53	-0.5
5,259,993	-		GFF5271	0.53	-0.1
5,260,019	+		GFF5271	0.56	-1.0
5,260,026	-		GFF5271	0.57	-2.2
5,260,027	-		GFF5271	0.57	-0.5
5,260,038	+		GFF5271	0.59	+0.3
5,260,047	+		GFF5271	0.60	-0.7
5,260,058	+		GFF5271	0.61	-0.2
5,260,060	-		GFF5271	0.61	-0.8
5,260,065	-		GFF5271	0.62	-0.2
5,260,065	-		GFF5271	0.62	-1.1
5,260,086	-		GFF5271	0.64	+0.8
5,260,118	+		GFF5271	0.68	-1.1
5,260,123	+		GFF5271	0.68	-0.0
5,260,123	+		GFF5271	0.68	-1.6
5,260,123	+		GFF5271	0.68	+0.7
5,260,131	-		GFF5271	0.69	-1.0
5,260,131	-		GFF5271	0.69	+0.1
5,260,131	-		GFF5271	0.69	-0.2
5,260,131	-		GFF5271	0.69	+1.9
5,260,164	-		GFF5271	0.73	-0.3
5,260,225	-		GFF5271	0.80	+0.6
5,260,225	-		GFF5271	0.80	-0.9
5,260,225	-		GFF5271	0.80	-0.3
5,260,239	-		GFF5271	0.82	+0.7
5,260,260	-		GFF5271	0.84	-0.7
5,260,276	+		GFF5271	0.86	+1.1
5,260,294	-		GFF5271	0.88	-0.4
5,260,297	+		GFF5271	0.88	+1.8
5,260,297	+		GFF5271	0.88	-1.8
5,260,297	+		GFF5271	0.88	-0.7
5,260,298	+		GFF5271	0.88	-0.6
5,260,305	-		GFF5271	0.89	+0.1
5,260,305	-		GFF5271	0.89	+0.1
5,260,345	+				-2.5
5,260,345	+				-1.0
5,260,353	-				+0.2
5,260,353	-				-2.2
5,260,360	-				-0.2
5,260,361	+				+0.7
5,260,362	+				-0.6
5,260,368	-				-0.2
5,260,368	-				-0.0
5,260,368	-				+0.2
5,260,371	+				-0.1
5,260,426	-				-0.6
5,260,430	+				-1.1
5,260,448	-				-2.2
5,260,448	-				+0.0
5,260,466	+				+0.3
5,260,466	+				-1.2
5,260,466	+				-2.1
5,260,466	+				-0.8
5,260,468	-				+0.3
5,260,474	-				-1.2
5,260,474	-				+0.2
5,260,490	+				+1.2
5,260,522	+				-1.6
5,260,522	+				-2.3
5,260,524	+				-0.4
5,260,524	+				-0.1
5,260,532	+				-0.3
5,260,532	+				-0.3
5,260,538	-				+1.1
5,260,540	-				-0.0
5,260,540	-				+0.4
5,260,555	+				-0.8
5,260,557	-				+0.5
5,260,563	-				+0.4
5,260,578	-				-1.0
5,260,579	-				-0.2
5,260,602	-				-1.2
5,260,602	-				-1.4
5,260,604	+				-0.5
5,260,604	+				+1.2
5,260,604	+				-0.6
5,260,607	-				-0.1
5,260,609	+				-0.5
5,260,609	+				-1.9
5,260,609	+				+1.4
5,260,609	+				+1.2
5,260,609	+				+0.5
5,260,609	+				-0.8
5,260,609	+				-2.6
5,260,612	-		GFF5272	0.10	+0.7
5,260,612	-		GFF5272	0.10	+0.5
5,260,614	+		GFF5272	0.10	-1.3
5,260,614	+		GFF5272	0.10	-1.9
5,260,614	+		GFF5272	0.10	-2.1
5,260,614	+		GFF5272	0.10	-1.8
5,260,614	+		GFF5272	0.10	+0.1
5,260,614	+		GFF5272	0.10	-1.6
5,260,617	-		GFF5272	0.10	-1.8
5,260,617	-		GFF5272	0.10	+0.5
5,260,617	-		GFF5272	0.10	-0.2
5,260,617	-		GFF5272	0.10	+0.2
5,260,617	-		GFF5272	0.10	-0.6
5,260,617	-		GFF5272	0.10	-1.1
5,260,617	-		GFF5272	0.10	-1.0
5,260,617	-		GFF5272	0.10	+0.4
5,260,617	-		GFF5272	0.10	+0.1
5,260,617	-		GFF5272	0.10	+0.5
5,260,622	-		GFF5272	0.11	+0.2
5,260,622	-		GFF5272	0.11	+1.4
5,260,622	-		GFF5272	0.11	-0.4
5,260,622	-		GFF5272	0.11	-0.3
5,260,622	-		GFF5272	0.11	+0.5
5,260,627	+		GFF5272	0.11	+1.0
5,260,627	+		GFF5272	0.11	+0.4
5,260,627	+		GFF5272	0.11	+0.5
5,260,632	+		GFF5272	0.12	-0.9
5,260,632	+		GFF5272	0.12	-1.5
5,260,655	+		GFF5272	0.14	+0.9
5,260,663	-		GFF5272	0.15	+0.5
5,260,666	-		GFF5272	0.15	+0.6
5,260,673	-		GFF5272	0.16	-0.6
5,260,683	-		GFF5272	0.16	+0.6
5,260,685	-		GFF5272	0.17	-0.3
5,260,693	+		GFF5272	0.17	-0.4
5,260,696	-		GFF5272	0.18	-1.0
5,260,701	-		GFF5272	0.18	+0.3
5,260,716	-		GFF5272	0.19	-0.6
5,260,748	-		GFF5272	0.22	-0.3
5,260,759	-		GFF5272	0.23	+0.0
5,260,760	-		GFF5272	0.23	-1.1
5,260,761	-		GFF5272	0.23	-0.9
5,260,768	+		GFF5272	0.24	+0.4
5,260,776	-		GFF5272	0.25	-0.6
5,260,816	-		GFF5272	0.28	-0.8
5,260,845	-		GFF5272	0.31	-1.0
5,260,858	-		GFF5272	0.32	+0.2
5,260,887	+		GFF5272	0.35	-1.0
5,260,887	+		GFF5272	0.35	+0.0
5,260,903	-		GFF5272	0.36	-0.1
5,260,903	-		GFF5272	0.36	+1.2
5,260,940	+		GFF5272	0.39	-0.4
5,260,947	-		GFF5272	0.40	+1.1
5,260,949	+		GFF5272	0.40	+1.3
5,260,949	+		GFF5272	0.40	-0.3
5,260,949	+		GFF5272	0.40	+0.2
5,260,954	+		GFF5272	0.41	+1.3
5,260,954	+		GFF5272	0.41	+0.7
5,260,954	+		GFF5272	0.41	-0.9
5,260,954	+		GFF5272	0.41	+0.9
5,260,957	-		GFF5272	0.41	+0.4
5,260,957	-		GFF5272	0.41	-1.3
5,260,957	-		GFF5272	0.41	+0.2
5,260,957	-		GFF5272	0.41	+0.8
5,260,962	-		GFF5272	0.41	+0.1
5,260,962	-		GFF5272	0.41	-0.9
5,260,997	-		GFF5272	0.45	-2.8
5,261,003	-		GFF5272	0.45	+0.4
5,261,003	-		GFF5272	0.45	+1.0
5,261,035	-		GFF5272	0.48	-0.4
5,261,080	+		GFF5272	0.52	-0.8
5,261,080	+		GFF5272	0.52	-1.7
5,261,088	-		GFF5272	0.53	+0.0
5,261,088	-		GFF5272	0.53	+0.3
5,261,090	-		GFF5272	0.53	+0.2
5,261,092	-		GFF5272	0.53	+0.7
5,261,099	+		GFF5272	0.54	+0.2
5,261,106	+		GFF5272	0.54	+1.5
5,261,148	+		GFF5272	0.58	-0.6
5,261,154	-		GFF5272	0.59	+0.9
5,261,156	-		GFF5272	0.59	-0.5
5,261,159	+		GFF5272	0.59	-1.1
5,261,206	+		GFF5272	0.63	+0.7
5,261,214	+		GFF5272	0.64	-2.6
5,261,216	+		GFF5272	0.64	-0.0
5,261,216	+		GFF5272	0.64	-1.1
5,261,224	-		GFF5272	0.65	+0.2
5,261,224	-		GFF5272	0.65	+0.8
5,261,229	+		GFF5272	0.65	+0.3
5,261,229	+		GFF5272	0.65	-1.5
5,261,229	+		GFF5272	0.65	-1.3
5,261,229	+		GFF5272	0.65	-0.2
5,261,229	+		GFF5272	0.65	-0.4
5,261,229	+		GFF5272	0.65	-0.9
5,261,237	-		GFF5272	0.66	+0.4
5,261,237	-		GFF5272	0.66	+1.7
5,261,267	-		GFF5272	0.69	+1.1
5,261,318	+		GFF5272	0.73	-0.3
5,261,326	+		GFF5272	0.74	+0.7
5,261,328	+		GFF5272	0.74	-0.5
5,261,329	+		GFF5272	0.74	+0.4
5,261,329	+		GFF5272	0.74	-0.1
5,261,329	+		GFF5272	0.74	-0.5
5,261,329	+		GFF5272	0.74	+0.5
5,261,329	+		GFF5272	0.74	+0.1
5,261,329	+		GFF5272	0.74	+0.0
5,261,329	+		GFF5272	0.74	-0.3
5,261,329	+		GFF5272	0.74	-0.1
5,261,329	+		GFF5272	0.74	+0.6
5,261,329	+		GFF5272	0.74	-1.3
5,261,337	-		GFF5272	0.75	-0.3
5,261,337	-		GFF5272	0.75	-0.7
5,261,337	-		GFF5272	0.75	-0.8
5,261,337	-		GFF5272	0.75	+0.5
5,261,337	-		GFF5272	0.75	-0.1
5,261,337	-		GFF5272	0.75	-0.8
5,261,337	-		GFF5272	0.75	+0.7
5,261,337	-		GFF5272	0.75	-1.2
5,261,337	-		GFF5272	0.75	-0.9
5,261,337	-		GFF5272	0.75	+0.0
5,261,337	-		GFF5272	0.75	-0.2
5,261,337	-		GFF5272	0.75	+0.4
5,261,348	-		GFF5272	0.76	-0.8
5,261,375	+		GFF5272	0.78	+0.3
5,261,375	+		GFF5272	0.78	-0.7
5,261,395	+		GFF5272	0.80	-0.2
5,261,403	-		GFF5272	0.81	-0.5
5,261,477	-		GFF5272	0.88	-0.7
5,261,484	+		GFF5272	0.88	-0.4
5,261,484	+		GFF5272	0.88	+0.4
5,261,484	+		GFF5272	0.88	+0.4
5,261,484	+		GFF5272	0.88	+0.7
5,261,484	+		GFF5272	0.88	-0.2
5,261,489	+		GFF5272	0.89	+0.2
5,261,492	-		GFF5272	0.89	-2.0
5,261,492	-		GFF5272	0.89	-0.6
5,261,492	-		GFF5272	0.89	+0.2
5,261,492	-		GFF5272	0.89	-0.5
5,261,556	+				-0.1
5,261,573	+				-0.9
5,261,573	+				+0.4
5,261,573	+				+0.4
5,261,573	+				-0.6
5,261,578	+				+1.1
5,261,581	-				-0.2
5,261,581	-				-1.1
5,261,610	-				+1.0
5,261,630	-				-1.4
5,261,635	+				-1.1
5,261,638	+				-2.0
5,261,643	-				-1.0
5,261,643	-				+0.5
5,261,666	-				+1.2
5,261,744	+				+0.2
5,261,744	+				-1.9
5,261,744	+				+0.2
5,261,752	-				+0.9
5,261,752	-				-1.3
5,261,834	-		GFF5273	0.13	+0.1
5,261,850	+		GFF5273	0.14	-0.7
5,261,855	+		GFF5273	0.14	+0.5
5,261,858	-		GFF5273	0.14	+0.9
5,261,858	-		GFF5273	0.14	-0.8
5,261,863	-		GFF5273	0.14	-1.5
5,261,865	+		GFF5273	0.14	+0.9
5,261,865	-		GFF5273	0.14	+0.2
5,261,877	-		GFF5273	0.15	+1.1
5,261,879	-		GFF5273	0.15	+0.2
5,261,914	+		GFF5273	0.17	+1.4
5,261,915	+		GFF5273	0.18	+0.9
5,261,915	+		GFF5273	0.18	+1.2
5,261,915	+		GFF5273	0.18	-1.3
5,261,915	+		GFF5273	0.18	-2.9
5,261,915	+		GFF5273	0.18	-1.3
5,261,932	+		GFF5273	0.19	-0.9
5,261,938	+		GFF5273	0.19	-0.4
5,261,940	-		GFF5273	0.19	+0.1
5,261,970	+		GFF5273	0.21	+0.6
5,261,970	+		GFF5273	0.21	+0.7
5,261,970	+		GFF5273	0.21	-0.3
5,261,978	-		GFF5273	0.21	+1.8
5,261,978	-		GFF5273	0.21	-2.8
5,261,978	-		GFF5273	0.21	+0.2
5,261,978	-		GFF5273	0.21	-0.3
5,261,978	-		GFF5273	0.21	-0.2
5,261,988	+		GFF5273	0.22	+0.5
5,261,988	+		GFF5273	0.22	-0.4
5,261,991	-		GFF5273	0.22	+0.0
5,261,993	+		GFF5273	0.22	-1.4
5,261,996	-		GFF5273	0.22	+1.0
5,261,998	+		GFF5273	0.23	-0.7
5,261,998	+		GFF5273	0.23	+0.0
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