Strain Fitness in Sphingobium sp. HT1-2 around GFF5067

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,062,299	-		GFF5065	0.87	+0.5
5,062,339	-				+1.1
5,062,345	-				+0.5
5,062,345	-				-1.3
5,062,345	-				-1.4
5,062,345	-				+1.5
5,062,346	+				+0.1
5,062,352	-				-0.1
5,062,354	-				-0.5
5,062,372	-				-0.9
5,062,379	+				-1.1
5,062,392	+				-0.4
5,062,393	+				+0.2
5,062,522	+				-1.4
5,062,532	+				-0.8
5,062,540	-				+0.6
5,062,568	+		GFF5066	0.15	+0.7
5,062,588	+		GFF5066	0.19	+0.9
5,062,602	+		GFF5066	0.22	+0.4
5,062,610	-		GFF5066	0.24	+0.9
5,062,610	-		GFF5066	0.24	-0.0
5,062,610	-		GFF5066	0.24	+0.6
5,062,635	+		GFF5066	0.29	-0.3
5,062,635	+		GFF5066	0.29	+0.2
5,062,643	-		GFF5066	0.31	+0.1
5,062,683	+		GFF5066	0.39	+0.1
5,062,699	-		GFF5066	0.42	-1.2
5,062,699	-		GFF5066	0.42	+0.7
5,062,729	+		GFF5066	0.48	-0.4
5,062,804	-		GFF5066	0.64	-0.2
5,062,806	-		GFF5066	0.64	+0.9
5,062,825	+		GFF5066	0.68	-0.2
5,062,839	+		GFF5066	0.71	-0.3
5,062,902	-		GFF5066	0.84	-2.0
5,062,912	+		GFF5066	0.86	-0.9
5,062,941	+				+0.9
5,062,941	+				-0.1
5,062,953	+				+0.1
5,062,953	+				-0.3
5,062,961	-				+0.5
5,062,961	-				-1.2
5,062,969	-				-0.8
5,062,980	-				-1.1
5,063,001	+				+0.5
5,063,001	+				-0.3
5,063,001	+				+1.3
5,063,001	+				+0.7
5,063,001	+				+0.9
5,063,001	+				-1.2
5,063,001	+				-0.4
5,063,006	+				-0.8
5,063,006	+				+0.5
5,063,006	+				+1.1
5,063,006	+				-0.2
5,063,006	+				+0.8
5,063,006	+				+1.1
5,063,009	-				+0.6
5,063,009	-				-2.8
5,063,013	+				-0.6
5,063,014	-				-0.5
5,063,014	-				+0.1
5,063,014	-				+0.6
5,063,014	-				-1.0
5,063,021	-				+0.1
5,063,024	-				+0.1
5,063,061	+				+0.9
5,063,072	-				-0.3
5,063,141	+				-0.2
5,063,168	+				-0.3
5,063,169	+				-0.8
5,063,171	+				-0.1
5,063,171	+				-0.8
5,063,177	-				-3.0
5,063,248	-				+0.2
5,063,260	-				-0.7
5,063,260	-				+0.3
5,063,260	-				+1.7
5,063,274	+				-0.4
5,063,282	-				+0.4
5,063,292	+				-0.2
5,063,338	-				+0.1
5,063,345	+				-1.0
5,063,345	+				+0.0
5,063,353	-				-0.9
5,063,353	-				-0.0
5,063,353	-				-0.8
5,063,353	-				+1.6
5,063,407	+		GFF5067	0.18	-0.5
5,063,429	+		GFF5067	0.21	+0.3
5,063,444	+		GFF5067	0.24	+0.3
5,063,444	+		GFF5067	0.24	-0.5
5,063,444	+		GFF5067	0.24	-1.0
5,063,452	-		GFF5067	0.25	+0.8
5,063,491	+		GFF5067	0.31	+0.2
5,063,521	+		GFF5067	0.36	+0.5
5,063,534	+		GFF5067	0.38	+0.0
5,063,576	+		GFF5067	0.45	-0.4
5,063,576	+		GFF5067	0.45	+0.1
5,063,576	+		GFF5067	0.45	+0.3
5,063,584	-		GFF5067	0.46	+0.0
5,063,584	-		GFF5067	0.46	-0.5
5,063,584	-		GFF5067	0.46	+0.3
5,063,629	+		GFF5067	0.54	-1.3
5,063,650	+		GFF5067	0.57	+0.5
5,063,686	+		GFF5067	0.63	+0.4
5,063,694	-		GFF5067	0.64	-0.1
5,063,710	+		GFF5067	0.67	+0.2
5,063,720	-		GFF5067	0.68	+0.3
5,063,730	+		GFF5067	0.70	+0.3
5,063,744	+		GFF5067	0.72	-0.6
5,063,752	-		GFF5067	0.74	-0.8
5,063,762	+		GFF5067	0.75	+0.8
5,063,762	+		GFF5067	0.75	+0.7
5,063,762	+		GFF5067	0.75	-0.5
5,063,770	-		GFF5067	0.77	+0.4
5,063,770	-		GFF5067	0.77	-0.1
5,063,770	-		GFF5067	0.77	+1.0
5,063,772	+		GFF5067	0.77	+0.5
5,063,792	-		GFF5067	0.80	-0.7
5,063,801	+		GFF5067	0.82	+0.6
5,063,809	-		GFF5067	0.83	-0.4
5,063,809	-		GFF5067	0.83	-1.1
5,063,809	-		GFF5067	0.83	-1.0
5,063,809	-		GFF5067	0.83	+0.5
5,063,810	+		GFF5067	0.83	-1.2
5,063,818	-		GFF5067	0.84	-2.2
5,063,818	-		GFF5067	0.84	-0.3
5,063,818	-		GFF5067	0.84	+0.1
5,063,819	+		GFF5067	0.84	+0.3
5,063,827	-		GFF5067	0.86	-0.2
5,063,827	-		GFF5067	0.86	+1.0
5,063,843	+		GFF5067	0.88	-0.1
5,063,851	+		GFF5067	0.90	+0.1
5,063,853	+				-0.2
5,063,853	+				-0.6
5,063,853	+				+0.7
5,063,859	-				+0.6
5,063,861	+				-0.9
5,063,861	+				-0.1
5,063,861	-				+0.9
5,063,868	+				+0.5
5,063,877	+				-0.5
5,063,885	-				-0.5
5,063,893	-				-2.7
5,063,895	-				+0.5
5,063,937	+				+0.2
5,063,952	+				+0.5
5,063,974	-				+0.5
5,063,985	+				-2.3
5,063,985	+				+0.4
5,064,007	+				-1.5
5,064,021	+				+0.9
5,064,024	+				-1.6
5,064,024	+				+1.0
5,064,026	+				+0.8
5,064,026	+				+0.8
5,064,034	-				+0.4
5,064,034	-				+0.8
5,064,044	-				+0.1
5,064,060	-				-0.9
5,064,066	+				+0.7
5,064,094	-				+0.5
5,064,123	+				+0.5
5,064,124	+				-2.9
5,064,131	+				-0.4
5,064,131	-				-0.7
5,064,141	-				+0.9
5,064,141	-				-1.6
5,064,143	-				-0.7
5,064,163	+				-0.4
5,064,168	+				+0.0
5,064,176	-				-1.1
5,064,209	-				-1.1
5,064,213	+				-1.7
5,064,213	+				+0.3
5,064,216	-				-0.4
5,064,220	-				-2.0
5,064,231	-				+0.2
5,064,307	+		GFF5068	0.14	-2.4
5,064,315	-		GFF5068	0.14	+0.4
5,064,315	-		GFF5068	0.14	-0.7
5,064,329	+		GFF5068	0.15	+1.1
5,064,329	+		GFF5068	0.15	-0.4
5,064,329	+		GFF5068	0.15	-0.1
5,064,329	+		GFF5068	0.15	-1.2
5,064,329	+		GFF5068	0.15	-0.1
5,064,329	+		GFF5068	0.15	+1.5
5,064,329	+		GFF5068	0.15	-0.2
5,064,329	+		GFF5068	0.15	+0.5
5,064,329	+		GFF5068	0.15	-0.5
5,064,329	+		GFF5068	0.15	-0.4
5,064,329	+		GFF5068	0.15	+0.7
5,064,329	+		GFF5068	0.15	+0.6
5,064,329	+		GFF5068	0.15	+0.9
5,064,329	+		GFF5068	0.15	-1.4
5,064,329	+		GFF5068	0.15	-0.4
5,064,331	-		GFF5068	0.15	-0.2
5,064,337	-		GFF5068	0.15	-0.7
5,064,337	-		GFF5068	0.15	+0.2
5,064,337	-		GFF5068	0.15	-0.6
5,064,337	-		GFF5068	0.15	+0.8
5,064,337	-		GFF5068	0.15	+1.6
5,064,337	-		GFF5068	0.15	+0.2
5,064,337	-		GFF5068	0.15	-0.2
5,064,337	-		GFF5068	0.15	+0.8
5,064,337	-		GFF5068	0.15	+0.7
5,064,337	-		GFF5068	0.15	-1.2
5,064,337	-		GFF5068	0.15	-0.4
5,064,352	-		GFF5068	0.16	+0.6
5,064,358	+		GFF5068	0.16	+0.2
5,064,362	-		GFF5068	0.17	-1.0
5,064,362	-		GFF5068	0.17	-2.4
5,064,382	-		GFF5068	0.18	-1.7
5,064,391	+		GFF5068	0.18	+0.8
5,064,391	+		GFF5068	0.18	-1.1
5,064,391	+		GFF5068	0.18	+0.7
5,064,391	+		GFF5068	0.18	-0.9
5,064,391	+		GFF5068	0.18	+0.7
5,064,391	+		GFF5068	0.18	-0.5
5,064,391	+		GFF5068	0.18	+1.3
5,064,391	+		GFF5068	0.18	-1.3
5,064,391	+		GFF5068	0.18	-0.9
5,064,399	-		GFF5068	0.19	+1.0
5,064,399	-		GFF5068	0.19	+0.1
5,064,399	-		GFF5068	0.19	+0.6
5,064,399	-		GFF5068	0.19	+0.5
5,064,399	-		GFF5068	0.19	+0.3
5,064,399	-		GFF5068	0.19	-1.0
5,064,399	-		GFF5068	0.19	-0.6
5,064,399	-		GFF5068	0.19	+0.5
5,064,399	-		GFF5068	0.19	+0.4
5,064,414	-		GFF5068	0.20	+0.6
5,064,414	-		GFF5068	0.20	-0.9
5,064,414	-		GFF5068	0.20	-1.0
5,064,423	+		GFF5068	0.20	+1.5
5,064,471	+		GFF5068	0.23	+0.4
5,064,476	+		GFF5068	0.23	+0.6
5,064,479	-		GFF5068	0.23	-2.0
5,064,479	-		GFF5068	0.23	+0.9
5,064,481	+		GFF5068	0.23	+0.4
5,064,481	+		GFF5068	0.23	+0.8
5,064,481	+		GFF5068	0.23	-0.3
5,064,481	+		GFF5068	0.23	+0.6
5,064,481	+		GFF5068	0.23	-1.3
5,064,481	+		GFF5068	0.23	+1.1
5,064,481	+		GFF5068	0.23	+0.6
5,064,481	+		GFF5068	0.23	-0.2
5,064,481	+		GFF5068	0.23	+0.5
5,064,481	+		GFF5068	0.23	+0.0
5,064,481	+		GFF5068	0.23	+1.0
5,064,481	+		GFF5068	0.23	-1.0
5,064,481	+		GFF5068	0.23	+0.1
5,064,481	+		GFF5068	0.23	+0.5
5,064,481	+		GFF5068	0.23	-1.9
5,064,481	+		GFF5068	0.23	-0.1
5,064,481	+		GFF5068	0.23	+0.1
5,064,481	+		GFF5068	0.23	-1.3
5,064,481	+		GFF5068	0.23	+0.0
5,064,481	+		GFF5068	0.23	+0.4
5,064,481	+		GFF5068	0.23	+0.1
5,064,481	+		GFF5068	0.23	-0.2
5,064,481	+		GFF5068	0.23	+0.4
5,064,489	-		GFF5068	0.24	+0.9
5,064,489	-		GFF5068	0.24	-0.1
5,064,489	-		GFF5068	0.24	-1.2
5,064,489	-		GFF5068	0.24	-1.8
5,064,489	-		GFF5068	0.24	+0.0
5,064,489	-		GFF5068	0.24	-1.5
5,064,489	-		GFF5068	0.24	-0.4
5,064,489	-		GFF5068	0.24	+1.1
5,064,489	-		GFF5068	0.24	+0.7
5,064,489	-		GFF5068	0.24	-0.1
5,064,489	-		GFF5068	0.24	-1.7
5,064,489	-		GFF5068	0.24	-0.7
5,064,489	-		GFF5068	0.24	-0.5
5,064,489	-		GFF5068	0.24	-0.2
5,064,489	-		GFF5068	0.24	+0.3
5,064,497	-		GFF5068	0.24	-0.2
5,064,500	-		GFF5068	0.24	+0.8
5,064,504	+		GFF5068	0.25	+0.3
5,064,514	+		GFF5068	0.25	-0.0
5,064,518	+		GFF5068	0.25	-0.4
5,064,526	-		GFF5068	0.26	-2.5
5,064,540	+		GFF5068	0.27	+0.6
5,064,540	+		GFF5068	0.27	-2.0
5,064,540	+		GFF5068	0.27	+0.2
5,064,540	+		GFF5068	0.27	+1.5
5,064,548	-		GFF5068	0.27	-1.0
5,064,548	-		GFF5068	0.27	-0.2
5,064,559	+		GFF5068	0.28	+0.7
5,064,559	+		GFF5068	0.28	+0.1
5,064,559	+		GFF5068	0.28	-2.1
5,064,559	+		GFF5068	0.28	+0.2
5,064,559	+		GFF5068	0.28	+0.4
5,064,559	+		GFF5068	0.28	+1.4
5,064,565	+		GFF5068	0.28	+1.0
5,064,567	-		GFF5068	0.28	-0.9
5,064,567	-		GFF5068	0.28	-1.2
5,064,567	-		GFF5068	0.28	+0.1
5,064,567	-		GFF5068	0.28	+0.9
5,064,567	-		GFF5068	0.28	+0.7
5,064,567	-		GFF5068	0.28	+0.6
5,064,567	-		GFF5068	0.28	+0.5
5,064,567	-		GFF5068	0.28	-0.8
5,064,567	-		GFF5068	0.28	+0.3
5,064,578	-		GFF5068	0.29	+0.2
5,064,599	+		GFF5068	0.30	+1.8
5,064,603	+		GFF5068	0.30	-0.3
5,064,607	-		GFF5068	0.30	-1.2
5,064,696	+		GFF5068	0.35	+0.6
5,064,696	+		GFF5068	0.35	-0.3
5,064,696	+		GFF5068	0.35	-0.5
5,064,699	-		GFF5068	0.36	+0.9
5,064,704	-		GFF5068	0.36	-0.0
5,064,704	-		GFF5068	0.36	-1.8
5,064,717	+		GFF5068	0.37	+1.5
5,064,717	-		GFF5068	0.37	+0.8
5,064,757	+		GFF5068	0.39	+0.1
5,064,765	-		GFF5068	0.39	-1.4
5,064,765	-		GFF5068	0.39	-0.1
5,064,769	+		GFF5068	0.39	+0.8
5,064,769	+		GFF5068	0.39	+1.1
5,064,769	+		GFF5068	0.39	+1.0
5,064,770	-		GFF5068	0.40	+1.1
5,064,774	+		GFF5068	0.40	+0.2
5,064,774	+		GFF5068	0.40	-1.3
5,064,774	+		GFF5068	0.40	+1.1
5,064,774	+		GFF5068	0.40	-0.2
5,064,774	+		GFF5068	0.40	+0.7
5,064,774	+		GFF5068	0.40	+1.1
5,064,774	+		GFF5068	0.40	-0.3
5,064,774	+		GFF5068	0.40	+0.9
5,064,774	+		GFF5068	0.40	-0.4
5,064,774	+		GFF5068	0.40	+1.3
5,064,774	+		GFF5068	0.40	-0.4
5,064,777	-		GFF5068	0.40	-0.9
5,064,777	-		GFF5068	0.40	-1.1
5,064,777	-		GFF5068	0.40	-0.1
5,064,782	-		GFF5068	0.40	+0.8
5,064,782	-		GFF5068	0.40	-1.0
5,064,782	-		GFF5068	0.40	+0.3
5,064,782	-		GFF5068	0.40	+0.4
5,064,782	-		GFF5068	0.40	-0.5
5,064,782	-		GFF5068	0.40	+0.0
5,064,782	-		GFF5068	0.40	-1.5
5,064,782	-		GFF5068	0.40	+0.6
5,064,782	-		GFF5068	0.40	+0.4
5,064,799	-		GFF5068	0.41	+1.1
5,064,818	-		GFF5068	0.42	-0.7
5,064,818	-		GFF5068	0.42	+0.8
5,064,833	-		GFF5068	0.43	-0.2
5,064,846	-		GFF5068	0.44	+0.4
5,064,846	-		GFF5068	0.44	+1.0
5,064,857	+		GFF5068	0.44	-0.9
5,064,857	+		GFF5068	0.44	+0.5
5,064,865	-		GFF5068	0.45	-0.5
5,064,865	-		GFF5068	0.45	-0.3
5,064,865	-		GFF5068	0.45	+0.1
5,064,884	+		GFF5068	0.46	-0.4
5,064,884	+		GFF5068	0.46	-0.7
5,064,884	+		GFF5068	0.46	-0.5
5,064,884	+		GFF5068	0.46	-1.1
5,064,889	+		GFF5068	0.46	-1.0
5,064,889	+		GFF5068	0.46	+0.5
5,064,892	-		GFF5068	0.46	-1.0
5,064,892	-		GFF5068	0.46	+0.4
5,064,892	-		GFF5068	0.46	+0.9
5,064,892	-		GFF5068	0.46	-1.3
5,064,902	-		GFF5068	0.47	+1.0