Strain Fitness in Sphingobium sp. HT1-2 around GFF4628

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,624,134	-				+0.2
4,624,136	+				-2.0
4,624,157	-				-0.4
4,624,172	+				+0.6
4,624,177	+				+0.3
4,624,186	+				-0.7
4,624,186	+				-0.8
4,624,186	+				-1.2
4,624,186	+				+1.1
4,624,186	+				+0.7
4,624,186	+				+0.5
4,624,186	+				-0.0
4,624,194	-				-0.9
4,624,194	-				-1.7
4,624,194	-				-0.0
4,624,194	-				-1.0
4,624,194	-				-0.0
4,624,221	-				-0.9
4,624,269	+				-1.0
4,624,277	+				-0.4
4,624,306	+				-1.3
4,624,306	+				-2.8
4,624,323	+				-0.2
4,624,331	-				+0.4
4,624,338	+				+0.4
4,624,343	+				-1.9
4,624,346	-				+0.5
4,624,346	-				+0.4
4,624,351	-				-0.4
4,624,353	+				+0.2
4,624,353	+				+0.1
4,624,353	+				-1.3
4,624,353	+				-1.9
4,624,353	+				+0.0
4,624,356	-				-0.7
4,624,360	-				+0.1
4,624,361	-				-0.1
4,624,361	-				+0.6
4,624,361	-				-0.6
4,624,361	-				-0.3
4,624,361	-				-0.0
4,624,410	+				+0.3
4,624,410	+				+0.8
4,624,410	+				-1.3
4,624,410	+				-1.0
4,624,410	+				+0.1
4,624,410	+				-0.8
4,624,410	+				-0.2
4,624,410	+				-0.4
4,624,418	-				+0.2
4,624,418	-				-0.5
4,624,418	-				+0.2
4,624,418	-				+0.4
4,624,418	-				+0.7
4,624,428	-				-0.3
4,624,428	-				+0.8
4,624,430	+				-0.8
4,624,432	+				+0.2
4,624,480	+				-0.8
4,624,487	+		GFF4627	0.11	-0.7
4,624,519	+		GFF4627	0.15	-1.0
4,624,523	+		GFF4627	0.16	-0.0
4,624,524	+		GFF4627	0.16	-0.5
4,624,531	-		GFF4627	0.17	+0.5
4,624,533	+		GFF4627	0.17	-0.2
4,624,551	-		GFF4627	0.19	-1.0
4,624,553	+		GFF4627	0.20	-2.0
4,624,568	+		GFF4627	0.22	-1.0
4,624,572	+		GFF4627	0.22	+0.2
4,624,580	-		GFF4627	0.23	-0.7
4,624,585	-		GFF4627	0.24	-1.8
4,624,587	+		GFF4627	0.24	-0.8
4,624,587	+		GFF4627	0.24	-1.1
4,624,587	+		GFF4627	0.24	+0.1
4,624,587	+		GFF4627	0.24	-0.9
4,624,595	-		GFF4627	0.26	+0.3
4,624,595	-		GFF4627	0.26	+0.0
4,624,595	-		GFF4627	0.26	-1.6
4,624,605	+		GFF4627	0.27	-1.8
4,624,611	+		GFF4627	0.28	-0.7
4,624,611	+		GFF4627	0.28	-0.8
4,624,619	-		GFF4627	0.29	-0.8
4,624,623	+		GFF4627	0.29	-0.5
4,624,623	+		GFF4627	0.29	-1.3
4,624,623	+		GFF4627	0.29	-0.9
4,624,623	+		GFF4627	0.29	-0.6
4,624,631	-		GFF4627	0.30	-0.7
4,624,631	-		GFF4627	0.30	-1.0
4,624,643	+		GFF4627	0.32	-0.7
4,624,646	-		GFF4627	0.33	+0.2
4,624,646	-		GFF4627	0.33	-1.4
4,624,651	-		GFF4627	0.33	-0.8
4,624,660	-		GFF4627	0.34	-1.5
4,624,673	+		GFF4627	0.36	-0.3
4,624,692	+		GFF4627	0.39	+0.2
4,624,697	+		GFF4627	0.40	-2.8
4,624,697	+		GFF4627	0.40	+0.1
4,624,700	-		GFF4627	0.40	-1.3
4,624,700	-		GFF4627	0.40	-0.2
4,624,712	-		GFF4627	0.42	-0.8
4,624,712	-		GFF4627	0.42	-0.1
4,624,712	-		GFF4627	0.42	-2.0
4,624,712	-		GFF4627	0.42	-0.8
4,624,712	-		GFF4627	0.42	-0.3
4,624,722	+		GFF4627	0.43	-1.6
4,624,732	+		GFF4627	0.44	+1.2
4,624,757	+		GFF4627	0.48	+0.7
4,624,765	-		GFF4627	0.49	+0.5
4,624,767	-		GFF4627	0.49	-1.9
4,624,778	+		GFF4627	0.51	+0.0
4,624,786	-		GFF4627	0.52	-1.1
4,624,786	-		GFF4627	0.52	+0.6
4,624,812	+		GFF4627	0.55	-0.8
4,624,812	+		GFF4627	0.55	+0.5
4,624,820	-		GFF4627	0.56	+0.8
4,624,820	-		GFF4627	0.56	-0.1
4,624,822	+		GFF4627	0.57	+0.2
4,624,825	-		GFF4627	0.57	+0.8
4,624,830	+		GFF4627	0.58	-0.2
4,624,835	-		GFF4627	0.58	-0.3
4,624,842	+		GFF4627	0.59	-1.4
4,624,845	-		GFF4627	0.60	-0.2
4,624,881	+		GFF4627	0.65	+0.1
4,624,881	+		GFF4627	0.65	-2.3
4,624,889	-		GFF4627	0.66	-0.4
4,624,906	+		GFF4627	0.68	-2.2
4,624,906	+		GFF4627	0.68	-0.9
4,624,906	+		GFF4627	0.68	+1.1
4,624,906	-		GFF4627	0.68	-0.3
4,624,914	-		GFF4627	0.69	-1.6
4,624,914	-		GFF4627	0.69	-0.2
4,624,916	-		GFF4627	0.70	-2.6
4,624,917	+		GFF4627	0.70	+0.9
4,624,917	+		GFF4627	0.70	-0.8
4,624,938	+		GFF4627	0.73	+0.1
4,624,948	+		GFF4627	0.74	-1.3
4,624,948	+		GFF4627	0.74	-1.1
4,624,948	+		GFF4627	0.74	-2.1
4,624,948	+		GFF4627	0.74	-1.3
4,624,956	-		GFF4627	0.75	-2.4
4,624,956	-		GFF4627	0.75	+0.8
4,624,956	-		GFF4627	0.75	+0.4
4,624,956	-		GFF4627	0.75	+0.4
4,624,956	-		GFF4627	0.75	-0.6
4,624,956	-		GFF4627	0.75	-1.9
4,624,956	-		GFF4627	0.75	-0.5
4,624,956	-		GFF4627	0.75	-2.3
4,624,956	-		GFF4627	0.75	-0.8
4,624,956	-		GFF4627	0.75	-0.1
4,624,973	-		GFF4627	0.77	-0.1
4,625,003	+		GFF4627	0.81	-0.3
4,625,011	-		GFF4627	0.83	+0.6
4,625,011	-		GFF4627	0.83	-0.2
4,625,011	-		GFF4627	0.83	-0.8
4,625,012	-		GFF4627	0.83	-2.8
4,625,024	-		GFF4627	0.84	-1.3
4,625,037	-		GFF4627	0.86	-0.3
4,625,037	-		GFF4627	0.86	+0.1
4,625,053	+		GFF4627	0.88	-1.6
4,625,061	-		GFF4627	0.89	-0.4
4,625,078	-				+1.0
4,625,078	-				-1.2
4,625,080	+				-1.8
4,625,080	+				-1.6
4,625,080	+				+0.2
4,625,084	-				-0.9
4,625,088	-				+0.2
4,625,088	-				+0.5
4,625,090	+				+1.1
4,625,090	+				-0.8
4,625,090	+				-2.9
4,625,090	+				-0.3
4,625,098	-				-0.5
4,625,102	+				-1.2
4,625,102	+				+0.7
4,625,108	+				+0.4
4,625,108	+				-0.4
4,625,108	+				-0.4
4,625,108	+				-3.0
4,625,108	+				-0.1
4,625,108	+				-1.1
4,625,108	+				-2.4
4,625,110	-				+0.7
4,625,110	-				+0.0
4,625,110	-				-0.3
4,625,114	-				+0.1
4,625,116	-				+0.1
4,625,116	-				-0.5
4,625,116	-				-2.4
4,625,135	-				-2.0
4,625,138	-				+0.2
4,625,144	+				+0.9
4,625,152	-				+0.2
4,625,158	+				-0.2
4,625,185	+				-0.9
4,625,200	-				-0.2
4,625,225	+				+0.5
4,625,246	+				-2.3
4,625,246	+				-0.3
4,625,251	+				+1.0
4,625,251	+				-0.3
4,625,251	+				-0.8
4,625,254	-				-1.1
4,625,290	-		GFF4628	0.11	-2.0
4,625,296	+		GFF4628	0.12	+0.1
4,625,296	+		GFF4628	0.12	-0.7
4,625,301	+		GFF4628	0.12	-0.6
4,625,301	+		GFF4628	0.12	+0.2
4,625,304	-		GFF4628	0.12	-0.9
4,625,309	+		GFF4628	0.13	-0.7
4,625,309	-		GFF4628	0.13	+1.1
4,625,309	-		GFF4628	0.13	-0.5
4,625,309	-		GFF4628	0.13	+0.5
4,625,326	-		GFF4628	0.14	-0.5
4,625,396	+		GFF4628	0.19	-0.7
4,625,406	-		GFF4628	0.20	-1.8
4,625,419	-		GFF4628	0.21	-0.9
4,625,456	+		GFF4628	0.23	+1.3
4,625,456	+		GFF4628	0.23	-0.6
4,625,464	-		GFF4628	0.24	-1.0
4,625,488	+		GFF4628	0.26	+0.3
4,625,495	+		GFF4628	0.26	+1.4
4,625,504	+		GFF4628	0.27	-2.8
4,625,515	+		GFF4628	0.28	-0.3
4,625,525	-		GFF4628	0.29	+0.7
4,625,527	-		GFF4628	0.29	-0.3
4,625,540	+		GFF4628	0.30	+1.2
4,625,545	+		GFF4628	0.30	-0.2
4,625,545	+		GFF4628	0.30	-0.1
4,625,573	+		GFF4628	0.32	-0.4
4,625,579	-		GFF4628	0.32	+0.0
4,625,602	+		GFF4628	0.34	+0.3
4,625,602	+		GFF4628	0.34	-3.2
4,625,620	+		GFF4628	0.35	-2.6
4,625,620	+		GFF4628	0.35	-0.3
4,625,620	+		GFF4628	0.35	-2.0
4,625,627	+		GFF4628	0.36	+0.6
4,625,628	-		GFF4628	0.36	-1.5
4,625,633	-		GFF4628	0.36	-0.1
4,625,644	+		GFF4628	0.37	-1.4
4,625,649	+		GFF4628	0.38	-0.3
4,625,661	+		GFF4628	0.38	+0.9
4,625,661	+		GFF4628	0.38	-1.1
4,625,661	+		GFF4628	0.38	-0.2
4,625,661	+		GFF4628	0.38	+0.2
4,625,661	+		GFF4628	0.38	-1.3
4,625,669	-		GFF4628	0.39	-2.6
4,625,683	-		GFF4628	0.40	-0.9
4,625,683	-		GFF4628	0.40	-0.1
4,625,683	-		GFF4628	0.40	+1.2
4,625,699	-		GFF4628	0.41	+1.7
4,625,708	+		GFF4628	0.42	-0.6
4,625,716	-		GFF4628	0.42	-0.3
4,625,721	-		GFF4628	0.43	-0.4
4,625,740	+		GFF4628	0.44	-0.8
4,625,750	+		GFF4628	0.45	-0.3
4,625,754	+		GFF4628	0.45	+0.5
4,625,754	+		GFF4628	0.45	+1.6
4,625,762	-		GFF4628	0.46	+0.8
4,625,762	-		GFF4628	0.46	-1.8
4,625,762	-		GFF4628	0.46	-0.1
4,625,762	-		GFF4628	0.46	+0.7
4,625,796	+		GFF4628	0.48	-0.9
4,625,813	+		GFF4628	0.50	-0.3
4,625,813	+		GFF4628	0.50	+0.7
4,625,813	+		GFF4628	0.50	+0.2
4,625,821	-		GFF4628	0.50	-0.2
4,625,821	-		GFF4628	0.50	+0.4
4,625,821	-		GFF4628	0.50	+0.0
4,625,821	-		GFF4628	0.50	+0.5
4,625,823	+		GFF4628	0.50	-1.8
4,625,823	+		GFF4628	0.50	+0.2
4,625,831	-		GFF4628	0.51	-0.7
4,625,833	+		GFF4628	0.51	-2.3
4,625,836	+		GFF4628	0.51	-1.4
4,625,841	-		GFF4628	0.52	+0.1
4,625,844	-		GFF4628	0.52	-0.7
4,625,849	+		GFF4628	0.52	-0.9
4,625,859	+		GFF4628	0.53	-0.6
4,625,878	-		GFF4628	0.54	+0.7
4,625,887	-		GFF4628	0.55	-0.1
4,625,912	+		GFF4628	0.57	+0.1
4,625,920	-		GFF4628	0.57	+0.7
4,625,928	-		GFF4628	0.58	-0.0
4,625,929	+		GFF4628	0.58	-0.3
4,625,933	+		GFF4628	0.58	-0.2
4,625,937	-		GFF4628	0.59	+0.9
4,625,939	+		GFF4628	0.59	+0.1
4,625,951	+		GFF4628	0.60	+0.5
4,625,951	+		GFF4628	0.60	-1.0
4,625,959	-		GFF4628	0.60	+0.5
4,625,959	-		GFF4628	0.60	-1.2
4,625,959	-		GFF4628	0.60	+0.2
4,625,959	-		GFF4628	0.60	-1.2
4,625,969	-		GFF4628	0.61	+0.9
4,625,977	-		GFF4628	0.61	+0.2
4,625,992	-		GFF4628	0.63	-2.1
4,625,992	-		GFF4628	0.63	-0.8
4,625,999	-		GFF4628	0.63	+0.1
4,626,000	+		GFF4628	0.63	+1.0
4,626,031	+		GFF4628	0.65	-0.7
4,626,031	+		GFF4628	0.65	-1.3
4,626,031	+		GFF4628	0.65	-0.2
4,626,031	+		GFF4628	0.65	+1.1
4,626,031	+		GFF4628	0.65	-1.0
4,626,031	+		GFF4628	0.65	-1.4
4,626,031	+		GFF4628	0.65	-0.1
4,626,031	+		GFF4628	0.65	+0.4
4,626,031	+		GFF4628	0.65	-1.3
4,626,031	+		GFF4628	0.65	+0.2
4,626,031	+		GFF4628	0.65	-0.8
4,626,039	-		GFF4628	0.66	-0.8
4,626,039	-		GFF4628	0.66	-1.8
4,626,039	-		GFF4628	0.66	-1.9
4,626,039	-		GFF4628	0.66	+0.7
4,626,039	-		GFF4628	0.66	-1.2
4,626,039	-		GFF4628	0.66	-0.9
4,626,039	-		GFF4628	0.66	-0.5
4,626,039	-		GFF4628	0.66	-1.2
4,626,039	-		GFF4628	0.66	+0.1
4,626,039	-		GFF4628	0.66	-0.5
4,626,039	-		GFF4628	0.66	+0.1
4,626,039	-		GFF4628	0.66	-0.8
4,626,039	-		GFF4628	0.66	-2.7
4,626,039	-		GFF4628	0.66	+0.2
4,626,039	-		GFF4628	0.66	-2.1
4,626,040	-		GFF4628	0.66	-0.5
4,626,040	-		GFF4628	0.66	-2.5
4,626,040	-		GFF4628	0.66	-0.4
4,626,040	-		GFF4628	0.66	-0.0
4,626,050	+		GFF4628	0.67	-1.6
4,626,058	-		GFF4628	0.67	-0.0
4,626,059	+		GFF4628	0.67	-0.2
4,626,102	-		GFF4628	0.71	-0.9
4,626,107	-		GFF4628	0.71	-0.8
4,626,107	-		GFF4628	0.71	+0.2
4,626,108	+		GFF4628	0.71	+0.2
4,626,116	-		GFF4628	0.72	-1.1
4,626,134	+		GFF4628	0.73	-0.8
4,626,134	+		GFF4628	0.73	+0.7
4,626,134	+		GFF4628	0.73	-0.4
4,626,139	+		GFF4628	0.73	-0.2
4,626,139	+		GFF4628	0.73	-0.0
4,626,142	-		GFF4628	0.74	-1.2
4,626,142	-		GFF4628	0.74	+0.5
4,626,146	-		GFF4628	0.74	+0.1
4,626,147	-		GFF4628	0.74	+0.2
4,626,179	+		GFF4628	0.76	-0.1
4,626,181	-		GFF4628	0.76	-0.9
4,626,182	-		GFF4628	0.76	-0.8
4,626,182	-		GFF4628	0.76	+0.2
4,626,187	+		GFF4628	0.77	-2.3
4,626,194	+		GFF4628	0.77	+0.6
4,626,195	-		GFF4628	0.77	-0.1
4,626,200	-		GFF4628	0.78	-1.7
4,626,247	+		GFF4628	0.81	-0.8
4,626,249	+		GFF4628	0.81	-0.3
4,626,249	+		GFF4628	0.81	-2.3
4,626,249	+		GFF4628	0.81	-1.2
4,626,252	-		GFF4628	0.82	-0.4
4,626,255	-		GFF4628	0.82	+1.2
4,626,274	-		GFF4628	0.83	-0.5
4,626,280	-		GFF4628	0.84	-0.8
4,626,309	-		GFF4628	0.86	+0.5
4,626,323	+		GFF4628	0.87	-1.9
4,626,331	-		GFF4628	0.87	+0.3
4,626,336	+		GFF4628	0.88	-0.9
4,626,336	-		GFF4628	0.88	-0.8
4,626,343	+		GFF4628	0.88	+0.2
4,626,343	+		GFF4628	0.88	+0.1
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