Strain Fitness in Sphingobium sp. HT1-2 around GFF4405

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,404,465	-				-1.7
4,404,467	+				-0.2
4,404,475	-				-0.0
4,404,475	-				+0.4
4,404,486	+				-1.8
4,404,486	+				+0.4
4,404,486	+				-0.3
4,404,486	+				+1.1
4,404,494	-				-0.0
4,404,511	+				+0.2
4,404,523	+				-0.0
4,404,525	+				-0.3
4,404,532	+				-0.0
4,404,537	+				+0.1
4,404,542	+				-0.2
4,404,549	+				-1.0
4,404,563	+				-0.2
4,404,574	-				-2.3
4,404,578	-				+0.2
4,404,578	-				-1.3
4,404,583	-				-0.2
4,404,588	-				-0.7
4,404,592	+				-0.2
4,404,592	+				-2.6
4,404,598	+				-1.0
4,404,604	-				-0.3
4,404,616	+				+0.2
4,404,620	+				-0.8
4,404,620	-				+0.3
4,404,636	+				-0.9
4,404,636	+				+1.2
4,404,643	+				-0.4
4,404,644	+				-3.2
4,404,644	+				+0.9
4,404,644	+				-0.9
4,404,644	+				-1.9
4,404,651	-				-2.5
4,404,651	-				+0.1
4,404,652	-				+0.0
4,404,652	-				-2.5
4,404,654	+				+0.0
4,404,662	-				-0.4
4,404,671	+				-0.1
4,404,690	+				-0.3
4,404,698	-				-0.2
4,404,714	+				-0.1
4,404,716	+				+0.2
4,404,716	+				-1.3
4,404,716	+				-1.7
4,404,724	-				-1.7
4,404,734	+				-1.2
4,404,735	-				-1.8
4,404,740	-				+1.1
4,404,747	-				+0.5
4,404,788	-				-1.0
4,404,794	+				-0.9
4,404,812	+				+0.5
4,404,812	-				+0.9
4,404,814	+				-0.5
4,404,814	+				-0.7
4,404,820	+				+0.6
4,404,822	-				-0.0
4,404,822	-				+0.1
4,404,822	-				-0.8
4,404,826	-				-2.1
4,404,826	-				+0.1
4,404,839	+				-0.0
4,404,863	+				-1.2
4,404,863	+				-2.2
4,404,863	+				-0.0
4,404,863	+				-0.9
4,404,863	+				+0.1
4,404,863	+				+0.5
4,404,863	+				+0.1
4,404,863	+				-1.7
4,404,863	+				-0.2
4,404,863	+				-0.4
4,404,869	+		GFF4403	0.11	-0.4
4,404,871	-		GFF4403	0.12	-0.3
4,404,871	-		GFF4403	0.12	-0.8
4,404,871	-		GFF4403	0.12	-1.5
4,404,871	-		GFF4403	0.12	-0.7
4,404,871	-		GFF4403	0.12	+0.4
4,404,871	-		GFF4403	0.12	+0.3
4,404,871	-		GFF4403	0.12	-0.6
4,404,871	-		GFF4403	0.12	-0.6
4,404,871	-		GFF4403	0.12	+0.9
4,404,871	-		GFF4403	0.12	+0.8
4,404,901	+		GFF4403	0.31	-0.8
4,404,901	+		GFF4403	0.31	-0.2
4,404,901	+		GFF4403	0.31	+0.5
4,404,901	+		GFF4403	0.31	+0.4
4,404,901	+		GFF4403	0.31	-1.5
4,404,901	+		GFF4403	0.31	-1.0
4,404,901	+		GFF4403	0.31	-2.2
4,404,904	-		GFF4403	0.33	-0.1
4,404,906	+		GFF4403	0.35	+0.4
4,404,909	-		GFF4403	0.37	-1.7
4,404,909	-		GFF4403	0.37	-0.7
4,404,909	-		GFF4403	0.37	-0.6
4,404,909	-		GFF4403	0.37	+0.1
4,404,914	-		GFF4403	0.40	+0.1
4,404,919	-		GFF4403	0.43	+0.0
4,404,919	-		GFF4403	0.43	-0.2
4,404,951	+		GFF4403	0.63	+0.3
4,404,952	+		GFF4403	0.64	-1.3
4,404,988	+		GFF4403	0.87	-0.5
4,404,996	-				+0.1
4,404,996	-				-0.8
4,404,996	-				+0.2
4,405,013	+				-0.7
4,405,013	-				-0.1
4,405,026	+		GFF4404	0.16	-0.7
4,405,027	-		GFF4404	0.17	-0.3
4,405,041	+		GFF4404	0.29	-0.2
4,405,041	-		GFF4404	0.29	-2.1
4,405,073	-		GFF4404	0.57	+0.4
4,405,121	+				+0.4
4,405,129	-				-0.2
4,405,135	+				+0.4
4,405,137	-				-0.5
4,405,139	-				-1.0
4,405,143	-				-0.8
4,405,165	+				-0.8
4,405,165	+				-1.0
4,405,165	+				+1.0
4,405,165	+				-0.1
4,405,168	+				-0.7
4,405,168	-				+0.1
4,405,173	+				-1.3
4,405,173	-				+0.3
4,405,173	-				-0.6
4,405,173	-				-1.6
4,405,173	-				-0.7
4,405,173	-				+0.2
4,405,173	-				-0.0
4,405,179	+				-1.0
4,405,205	+				-0.5
4,405,206	+				-0.8
4,405,214	-				-0.2
4,405,224	+				-2.2
4,405,230	-				+0.8
4,405,242	-				-2.0
4,405,242	-				-1.3
4,405,242	-				+0.9
4,405,249	-				-0.2
4,405,262	+				-0.5
4,405,270	-				+1.0
4,405,270	-				+0.1
4,405,279	+				-1.6
4,405,292	-				-0.9
4,405,296	-				-0.1
4,405,531	+				+0.7
4,405,531	+				-0.7
4,405,541	+				-1.2
4,405,558	+				-0.4
4,405,569	+				+0.0
4,405,569	+				-0.9
4,405,569	+				-0.4
4,405,569	+				-1.0
4,405,569	+				-1.7
4,405,569	+				+0.5
4,405,577	-		GFF4405	0.10	-1.3
4,405,577	-		GFF4405	0.10	+0.5
4,405,577	-		GFF4405	0.10	+1.5
4,405,577	-		GFF4405	0.10	-0.2
4,405,577	-		GFF4405	0.10	-1.4
4,405,577	-		GFF4405	0.10	-1.0
4,405,582	-		GFF4405	0.11	-1.0
4,405,605	-		GFF4405	0.13	+1.8
4,405,607	+		GFF4405	0.13	+0.5
4,405,610	-		GFF4405	0.13	-0.1
4,405,610	-		GFF4405	0.13	-0.3
4,405,610	-		GFF4405	0.13	+1.2
4,405,611	-		GFF4405	0.13	-2.3
4,405,611	-		GFF4405	0.13	-2.3
4,405,614	+		GFF4405	0.14	-1.1
4,405,614	+		GFF4405	0.14	+0.6
4,405,617	-		GFF4405	0.14	-0.4
4,405,617	-		GFF4405	0.14	-1.1
4,405,620	+		GFF4405	0.14	+0.6
4,405,647	-		GFF4405	0.16	-1.1
4,405,650	+		GFF4405	0.17	+0.2
4,405,658	+		GFF4405	0.17	+0.3
4,405,658	+		GFF4405	0.17	+1.3
4,405,659	+		GFF4405	0.17	-0.7
4,405,664	+		GFF4405	0.18	-0.2
4,405,672	+		GFF4405	0.18	+0.1
4,405,673	+		GFF4405	0.18	-0.4
4,405,681	+		GFF4405	0.19	-1.9
4,405,681	-		GFF4405	0.19	+0.7
4,405,681	-		GFF4405	0.19	-0.2
4,405,681	-		GFF4405	0.19	-0.4
4,405,681	-		GFF4405	0.19	-0.0
4,405,686	+		GFF4405	0.19	+0.1
4,405,689	-		GFF4405	0.20	+1.5
4,405,694	-		GFF4405	0.20	-1.7
4,405,694	-		GFF4405	0.20	-0.1
4,405,709	+		GFF4405	0.21	+1.2
4,405,709	+		GFF4405	0.21	+0.5
4,405,709	+		GFF4405	0.21	-1.4
4,405,709	+		GFF4405	0.21	-1.0
4,405,709	+		GFF4405	0.21	+0.1
4,405,717	-		GFF4405	0.22	+1.5
4,405,717	-		GFF4405	0.22	-0.4
4,405,717	-		GFF4405	0.22	-0.4
4,405,717	-		GFF4405	0.22	-1.2
4,405,717	-		GFF4405	0.22	+0.2
4,405,717	-		GFF4405	0.22	+0.9
4,405,719	+		GFF4405	0.22	-0.1
4,405,719	+		GFF4405	0.22	-2.0
4,405,719	+		GFF4405	0.22	-2.2
4,405,719	+		GFF4405	0.22	-0.7
4,405,719	+		GFF4405	0.22	+0.7
4,405,719	+		GFF4405	0.22	+0.5
4,405,719	+		GFF4405	0.22	-1.2
4,405,719	+		GFF4405	0.22	+0.9
4,405,719	+		GFF4405	0.22	-1.9
4,405,719	+		GFF4405	0.22	-0.8
4,405,719	+		GFF4405	0.22	+0.3
4,405,719	+		GFF4405	0.22	-0.3
4,405,719	+		GFF4405	0.22	+0.7
4,405,719	+		GFF4405	0.22	-1.2
4,405,719	+		GFF4405	0.22	+0.6
4,405,724	+		GFF4405	0.23	-0.2
4,405,727	-		GFF4405	0.23	+0.5
4,405,727	-		GFF4405	0.23	-0.1
4,405,727	-		GFF4405	0.23	-0.1
4,405,727	-		GFF4405	0.23	-0.7
4,405,727	-		GFF4405	0.23	-1.6
4,405,727	-		GFF4405	0.23	+0.1
4,405,727	-		GFF4405	0.23	-0.9
4,405,727	-		GFF4405	0.23	-0.7
4,405,727	-		GFF4405	0.23	-2.4
4,405,727	-		GFF4405	0.23	-0.7
4,405,729	+		GFF4405	0.23	-0.1
4,405,729	+		GFF4405	0.23	+0.1
4,405,729	+		GFF4405	0.23	-0.4
4,405,729	+		GFF4405	0.23	-2.2
4,405,729	+		GFF4405	0.23	+0.2
4,405,729	+		GFF4405	0.23	-1.4
4,405,732	-		GFF4405	0.23	+0.9
4,405,732	-		GFF4405	0.23	-0.5
4,405,735	-		GFF4405	0.24	-0.8
4,405,735	-		GFF4405	0.24	-0.5
4,405,737	-		GFF4405	0.24	+0.5
4,405,737	-		GFF4405	0.24	-0.0
4,405,737	-		GFF4405	0.24	+0.2
4,405,737	-		GFF4405	0.24	+0.2
4,405,738	+		GFF4405	0.24	+0.7
4,405,746	-		GFF4405	0.24	+0.3
4,405,746	-		GFF4405	0.24	-0.5
4,405,748	+		GFF4405	0.25	-0.6
4,405,751	-		GFF4405	0.25	-0.1
4,405,752	+		GFF4405	0.25	+0.3
4,405,752	+		GFF4405	0.25	-0.8
4,405,756	-		GFF4405	0.25	+0.9
4,405,760	-		GFF4405	0.26	-1.1
4,405,761	+		GFF4405	0.26	-1.2
4,405,771	+		GFF4405	0.26	-2.0
4,405,777	-		GFF4405	0.27	+0.2
4,405,784	-		GFF4405	0.28	+1.0
4,405,784	-		GFF4405	0.28	+0.6
4,405,798	+		GFF4405	0.29	-0.8
4,405,801	-		GFF4405	0.29	+0.2
4,405,803	+		GFF4405	0.29	-0.7
4,405,804	+		GFF4405	0.29	-1.0
4,405,809	+		GFF4405	0.30	+0.0
4,405,809	+		GFF4405	0.30	+0.2
4,405,811	-		GFF4405	0.30	-0.2
4,405,811	-		GFF4405	0.30	-0.6
4,405,811	-		GFF4405	0.30	-0.3
4,405,811	-		GFF4405	0.30	-1.6
4,405,828	-		GFF4405	0.31	-1.4
4,405,829	-		GFF4405	0.31	-1.3
4,405,830	+		GFF4405	0.31	-1.1
4,405,831	+		GFF4405	0.31	+0.1
4,405,838	-		GFF4405	0.32	+0.1
4,405,839	-		GFF4405	0.32	-0.6
4,405,844	+		GFF4405	0.33	-0.1
4,405,844	+		GFF4405	0.33	-1.3
4,405,844	+		GFF4405	0.33	-0.5
4,405,844	+		GFF4405	0.33	+1.2
4,405,844	+		GFF4405	0.33	-0.5
4,405,844	+		GFF4405	0.33	-0.5
4,405,844	+		GFF4405	0.33	+0.1
4,405,844	+		GFF4405	0.33	-0.7
4,405,844	+		GFF4405	0.33	+2.0
4,405,844	+		GFF4405	0.33	+1.0
4,405,844	+		GFF4405	0.33	-0.5
4,405,844	+		GFF4405	0.33	+1.1
4,405,844	+		GFF4405	0.33	-0.9
4,405,851	+		GFF4405	0.33	+0.1
4,405,852	-		GFF4405	0.33	-0.4
4,405,852	-		GFF4405	0.33	-0.6
4,405,852	-		GFF4405	0.33	-2.0
4,405,852	-		GFF4405	0.33	-1.7
4,405,852	-		GFF4405	0.33	-0.4
4,405,852	-		GFF4405	0.33	-1.8
4,405,852	-		GFF4405	0.33	-0.7
4,405,852	-		GFF4405	0.33	-0.2
4,405,852	-		GFF4405	0.33	-0.2
4,405,852	-		GFF4405	0.33	+0.2
4,405,854	+		GFF4405	0.33	+0.1
4,405,854	+		GFF4405	0.33	-1.4
4,405,854	+		GFF4405	0.33	-2.5
4,405,862	-		GFF4405	0.34	-0.3
4,405,862	-		GFF4405	0.34	-1.8
4,405,862	-		GFF4405	0.34	-1.9
4,405,862	-		GFF4405	0.34	-0.9
4,405,875	+		GFF4405	0.35	+0.9
4,405,877	+		GFF4405	0.35	+0.4
4,405,882	+		GFF4405	0.36	-0.2
4,405,883	-		GFF4405	0.36	-1.0
4,405,883	-		GFF4405	0.36	-1.1
4,405,884	-		GFF4405	0.36	-0.8
4,405,885	+		GFF4405	0.36	+0.3
4,405,886	+		GFF4405	0.36	-0.4
4,405,893	-		GFF4405	0.37	-0.7
4,405,895	-		GFF4405	0.37	-0.1
4,405,913	+		GFF4405	0.38	-0.2
4,405,913	+		GFF4405	0.38	-0.8
4,405,913	+		GFF4405	0.38	+0.4
4,405,913	+		GFF4405	0.38	+0.0
4,405,914	+		GFF4405	0.38	-0.3
4,405,914	+		GFF4405	0.38	-2.6
4,405,914	+		GFF4405	0.38	+1.2
4,405,917	-		GFF4405	0.39	+0.2
4,405,917	-		GFF4405	0.39	-1.8
4,405,920	+		GFF4405	0.39	-1.2
4,405,920	+		GFF4405	0.39	-1.7
4,405,921	-		GFF4405	0.39	-1.2
4,405,921	-		GFF4405	0.39	+1.0
4,405,922	-		GFF4405	0.39	-0.2
4,405,922	-		GFF4405	0.39	+0.4
4,405,923	-		GFF4405	0.39	-0.1
4,405,923	-		GFF4405	0.39	-0.1
4,405,928	-		GFF4405	0.39	-2.3
4,405,928	-		GFF4405	0.39	+0.9
4,405,928	-		GFF4405	0.39	-1.4
4,405,928	-		GFF4405	0.39	+1.2
4,405,928	-		GFF4405	0.39	-0.2
4,405,928	-		GFF4405	0.39	-0.9
4,405,928	-		GFF4405	0.39	-0.1
4,405,933	-		GFF4405	0.40	-0.9
4,405,933	-		GFF4405	0.40	+0.3
4,405,940	+		GFF4405	0.40	+0.0
4,405,940	+		GFF4405	0.40	-0.7
4,405,940	+		GFF4405	0.40	-1.9
4,405,940	+		GFF4405	0.40	-1.2
4,405,940	+		GFF4405	0.40	-2.6
4,405,940	+		GFF4405	0.40	-1.1
4,405,940	+		GFF4405	0.40	+0.4
4,405,940	+		GFF4405	0.40	-0.4
4,405,940	+		GFF4405	0.40	-0.5
4,405,940	+		GFF4405	0.40	+0.2
4,405,940	+		GFF4405	0.40	-0.2
4,405,940	+		GFF4405	0.40	-0.4
4,405,940	+		GFF4405	0.40	-1.8
4,405,940	+		GFF4405	0.40	-0.2
4,405,940	+		GFF4405	0.40	-1.5
4,405,940	+		GFF4405	0.40	-0.1
4,405,940	+		GFF4405	0.40	+0.0
4,405,940	+		GFF4405	0.40	-0.5
4,405,940	+		GFF4405	0.40	-1.6
4,405,940	+		GFF4405	0.40	+1.0
4,405,940	+		GFF4405	0.40	-0.1
4,405,940	+		GFF4405	0.40	-1.0
4,405,948	-		GFF4405	0.41	-3.0
4,405,948	-		GFF4405	0.41	-0.2
4,405,948	-		GFF4405	0.41	+0.0
4,405,948	-		GFF4405	0.41	-0.6
4,405,948	-		GFF4405	0.41	-0.0
4,405,948	-		GFF4405	0.41	-2.3
4,405,948	-		GFF4405	0.41	-1.1
4,405,948	-		GFF4405	0.41	+0.2
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4,406,706	+				+0.3
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4,406,721	-				+0.3
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4,406,723	+				-1.3
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4,406,733	-				-1.7
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4,406,783	-				-0.4
4,406,799	+				-2.9
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4,406,917	-				-0.9
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4,406,919	+				+0.5
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