Strain Fitness in Sphingobium sp. HT1-2 around GFF3600

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,644,410	-		GFF3599	0.14	-0.2
3,644,471	-		GFF3599	0.19	+1.1
3,644,486	+		GFF3599	0.21	-0.8
3,644,491	+		GFF3599	0.21	+0.2
3,644,494	-		GFF3599	0.21	-0.1
3,644,588	+		GFF3599	0.30	+0.4
3,644,588	+		GFF3599	0.30	+0.8
3,644,588	+		GFF3599	0.30	+0.7
3,644,588	+		GFF3599	0.30	-1.5
3,644,588	+		GFF3599	0.30	-0.7
3,644,596	-		GFF3599	0.31	-1.4
3,644,596	-		GFF3599	0.31	-1.7
3,644,596	-		GFF3599	0.31	+1.0
3,644,598	+		GFF3599	0.31	-0.3
3,644,605	+		GFF3599	0.31	+0.8
3,644,605	+		GFF3599	0.31	-0.9
3,644,613	-		GFF3599	0.32	-0.3
3,644,613	-		GFF3599	0.32	-0.1
3,644,613	-		GFF3599	0.32	-1.6
3,644,613	-		GFF3599	0.32	+0.4
3,644,613	-		GFF3599	0.32	-1.4
3,644,613	-		GFF3599	0.32	-1.3
3,644,621	-		GFF3599	0.33	-0.2
3,644,627	+		GFF3599	0.34	-0.1
3,644,684	+		GFF3599	0.39	+0.1
3,644,690	+		GFF3599	0.39	-0.8
3,644,690	+		GFF3599	0.39	-0.1
3,644,692	-		GFF3599	0.40	+1.2
3,644,693	-		GFF3599	0.40	+0.5
3,644,723	+		GFF3599	0.42	-0.9
3,644,738	-		GFF3599	0.44	-1.0
3,644,800	+		GFF3599	0.49	-0.7
3,644,802	-		GFF3599	0.50	+0.2
3,644,834	+		GFF3599	0.53	+0.6
3,644,842	-		GFF3599	0.53	-0.3
3,644,842	-		GFF3599	0.53	-0.4
3,644,852	-		GFF3599	0.54	-0.4
3,644,852	-		GFF3599	0.54	+0.6
3,644,852	-		GFF3599	0.54	+0.4
3,644,852	-		GFF3599	0.54	-1.3
3,644,861	+		GFF3599	0.55	+0.8
3,644,861	+		GFF3599	0.55	+0.2
3,644,866	+		GFF3599	0.56	+0.9
3,644,866	+		GFF3599	0.56	+0.4
3,644,866	+		GFF3599	0.56	-1.0
3,644,866	+		GFF3599	0.56	+0.4
3,644,869	-		GFF3599	0.56	-2.4
3,644,869	-		GFF3599	0.56	+0.1
3,644,869	-		GFF3599	0.56	+0.0
3,644,874	-		GFF3599	0.56	-0.9
3,644,874	-		GFF3599	0.56	+0.5
3,644,874	-		GFF3599	0.56	-0.4
3,644,929	-		GFF3599	0.61	-1.9
3,644,934	+		GFF3599	0.62	+1.2
3,644,934	-		GFF3599	0.62	+1.1
3,644,934	-		GFF3599	0.62	-0.5
3,644,942	-		GFF3599	0.63	-0.8
3,644,942	-		GFF3599	0.63	-0.5
3,644,944	+		GFF3599	0.63	-1.9
3,644,944	+		GFF3599	0.63	-1.8
3,644,947	-		GFF3599	0.63	+0.1
3,644,947	-		GFF3599	0.63	-1.2
3,644,952	-		GFF3599	0.63	-0.4
3,644,952	-		GFF3599	0.63	-0.9
3,644,961	+		GFF3599	0.64	-2.2
3,644,980	+		GFF3599	0.66	+0.0
3,644,980	+		GFF3599	0.66	-0.5
3,644,980	+		GFF3599	0.66	-2.5
3,644,988	-		GFF3599	0.67	-0.1
3,644,988	-		GFF3599	0.67	-0.5
3,644,988	-		GFF3599	0.67	-0.5
3,644,988	-		GFF3599	0.67	-0.0
3,644,988	-		GFF3599	0.67	-0.8
3,644,988	-		GFF3599	0.67	-0.8
3,644,988	-		GFF3599	0.67	-1.7
3,644,988	-		GFF3599	0.67	-1.3
3,644,988	-		GFF3599	0.67	-3.1
3,645,011	+		GFF3599	0.69	-0.1
3,645,011	+		GFF3599	0.69	+1.6
3,645,011	+		GFF3599	0.69	-1.3
3,645,011	+		GFF3599	0.69	-0.2
3,645,011	+		GFF3599	0.69	-1.0
3,645,011	+		GFF3599	0.69	-1.9
3,645,011	+		GFF3599	0.69	+0.9
3,645,011	+		GFF3599	0.69	-0.0
3,645,011	+		GFF3599	0.69	-1.6
3,645,014	-		GFF3599	0.69	+0.5
3,645,019	-		GFF3599	0.70	-1.0
3,645,019	-		GFF3599	0.70	-0.7
3,645,019	-		GFF3599	0.70	+0.6
3,645,019	-		GFF3599	0.70	+0.1
3,645,019	-		GFF3599	0.70	-1.1
3,645,019	-		GFF3599	0.70	+0.9
3,645,019	-		GFF3599	0.70	-0.6
3,645,019	-		GFF3599	0.70	-0.9
3,645,019	-		GFF3599	0.70	+0.9
3,645,019	-		GFF3599	0.70	-0.3
3,645,019	-		GFF3599	0.70	-0.9
3,645,029	-		GFF3599	0.71	-0.5
3,645,039	+		GFF3599	0.71	-1.1
3,645,063	+		GFF3599	0.74	+0.7
3,645,063	+		GFF3599	0.74	+0.5
3,645,071	-		GFF3599	0.74	-0.5
3,645,071	-		GFF3599	0.74	-1.2
3,645,071	-		GFF3599	0.74	+0.5
3,645,107	-		GFF3599	0.78	+0.1
3,645,135	+		GFF3599	0.80	-2.2
3,645,147	-		GFF3599	0.81	+0.1
3,645,154	+		GFF3599	0.82	-0.7
3,645,154	+		GFF3599	0.82	+1.4
3,645,154	+		GFF3599	0.82	-1.7
3,645,162	-		GFF3599	0.83	-1.6
3,645,162	-		GFF3599	0.83	+0.0
3,645,162	-		GFF3599	0.83	+0.1
3,645,193	-		GFF3599	0.86	+1.3
3,645,208	+		GFF3599	0.87	-1.6
3,645,208	+		GFF3599	0.87	-0.3
3,645,216	-		GFF3599	0.88	+1.6
3,645,233	+		GFF3599	0.89	+0.2
3,645,233	+		GFF3599	0.89	-0.4
3,645,233	+		GFF3599	0.89	+0.1
3,645,233	+		GFF3599	0.89	-0.9
3,645,233	+		GFF3599	0.89	-1.6
3,645,233	+		GFF3599	0.89	-1.4
3,645,233	+		GFF3599	0.89	+0.7
3,645,241	-				-0.3
3,645,241	-				-1.2
3,645,241	-				-0.9
3,645,241	-				-0.8
3,645,241	-				-1.7
3,645,241	-				+0.7
3,645,241	-				+1.1
3,645,241	-				+0.7
3,645,241	-				-0.2
3,645,241	-				-0.2
3,645,265	+				+0.7
3,645,265	+				+0.6
3,645,265	+				-0.8
3,645,265	+				+0.8
3,645,265	+				+1.4
3,645,266	+				-0.2
3,645,270	+				+0.6
3,645,273	-				-0.2
3,645,273	-				-0.5
3,645,273	-				-2.2
3,645,278	-				-0.2
3,645,278	-				-1.4
3,645,278	-				-1.4
3,645,284	+				-1.8
3,645,284	+				+1.2
3,645,284	+				+0.1
3,645,292	-				-0.5
3,645,292	-				-0.1
3,645,294	+				-0.6
3,645,307	-				-0.4
3,645,328	+				+0.5
3,645,336	-				-0.5
3,645,350	+				+0.6
3,646,626	+				+0.3
3,646,641	-				+0.2
3,646,643	+				-0.9
3,646,651	-				-1.4
3,646,695	+				+0.7
3,646,695	+				-2.1
3,646,703	-				+0.2
3,646,703	-				+0.1
3,646,703	-				-0.8
3,646,703	-				-1.6
3,646,703	-				-1.0
3,646,710	+				+0.3
3,646,728	-				-0.9
3,646,731	+				-2.3
3,646,739	-		GFF3601	0.11	+0.1
3,646,780	+		GFF3601	0.23	-2.2
3,646,792	-		GFF3601	0.26	-1.6
3,646,793	+		GFF3601	0.27	-0.0
3,646,799	+		GFF3601	0.28	-2.1
3,646,822	-		GFF3601	0.35	-0.2
3,646,830	-		GFF3601	0.37	-2.1
3,646,870	+		GFF3601	0.48	-0.5
3,646,902	+		GFF3601	0.57	-1.6
3,646,905	-		GFF3601	0.58	-0.9
3,646,910	-		GFF3601	0.59	+1.1
3,646,914	-		GFF3601	0.61	-0.4
3,646,915	-		GFF3601	0.61	-0.8
3,646,920	-		GFF3601	0.62	+0.5
3,646,933	+		GFF3601	0.66	+2.2
3,646,978	+		GFF3601	0.78	-0.7
3,646,987	+		GFF3601	0.81	-1.9
3,646,991	+		GFF3601	0.82	+0.1
3,646,991	+		GFF3601	0.82	+0.4
3,646,999	-		GFF3601	0.84	-0.4
3,647,004	+		GFF3601	0.86	-0.9
3,647,012	-		GFF3601	0.88	-0.4
3,647,020	-				-0.6
3,647,027	+				-0.9
3,647,027	+				-2.5
3,647,032	+				-0.0
3,647,035	-				-1.5
3,647,035	-				+1.6
3,647,036	+				+0.4
3,647,037	+				-0.2
3,647,056	+				-0.2
3,647,058	-				-0.4
3,647,059	-				-0.8
3,647,059	-				-0.2
3,647,064	-				-0.5
3,647,071	-				-0.4
3,647,073	-				-1.3
3,647,122	+				-0.4
3,647,122	+				-1.9
3,647,130	-				+0.1
3,647,142	+		GFF3602	0.11	-3.3
3,647,149	+		GFF3602	0.11	+0.4
3,647,152	-		GFF3602	0.12	+0.5
3,647,152	-		GFF3602	0.12	+0.1
3,647,154	+		GFF3602	0.12	-2.6
3,647,154	+		GFF3602	0.12	+0.2
3,647,154	+		GFF3602	0.12	-1.5
3,647,154	+		GFF3602	0.12	+0.5
3,647,154	+		GFF3602	0.12	-1.3
3,647,154	+		GFF3602	0.12	+1.8
3,647,154	+		GFF3602	0.12	-0.9
3,647,154	+		GFF3602	0.12	+0.1
3,647,154	+		GFF3602	0.12	-1.4
3,647,154	+		GFF3602	0.12	-0.7
3,647,157	-		GFF3602	0.12	+0.4
3,647,162	-		GFF3602	0.13	-0.4
3,647,162	-		GFF3602	0.13	+2.4
3,647,162	-		GFF3602	0.13	-1.0
3,647,162	-		GFF3602	0.13	-0.1
3,647,162	-		GFF3602	0.13	+0.2
3,647,180	+		GFF3602	0.14	-0.1
3,647,192	-		GFF3602	0.15	-0.9
3,647,199	+		GFF3602	0.16	-0.5
3,647,199	+		GFF3602	0.16	+0.2
3,647,207	-		GFF3602	0.17	+0.9
3,647,207	-		GFF3602	0.17	+0.4
3,647,226	-		GFF3602	0.19	-0.1
3,647,229	+		GFF3602	0.19	+0.4
3,647,229	+		GFF3602	0.19	-0.3
3,647,229	+		GFF3602	0.19	+0.4
3,647,229	+		GFF3602	0.19	-0.6
3,647,237	-		GFF3602	0.20	+0.3
3,647,237	-		GFF3602	0.20	-0.9
3,647,237	-		GFF3602	0.20	+0.1
3,647,237	-		GFF3602	0.20	+0.5
3,647,237	-		GFF3602	0.20	-2.6
3,647,237	-		GFF3602	0.20	-1.4
3,647,324	+		GFF3602	0.28	-0.9
3,647,324	+		GFF3602	0.28	-1.5
3,647,329	+		GFF3602	0.28	-0.8
3,647,332	-		GFF3602	0.28	-0.4
3,647,332	-		GFF3602	0.28	-0.4
3,647,339	+		GFF3602	0.29	-1.1
3,647,339	+		GFF3602	0.29	-1.4
3,647,339	+		GFF3602	0.29	+0.1
3,647,349	+		GFF3602	0.30	-1.9
3,647,349	+		GFF3602	0.30	-0.6
3,647,349	+		GFF3602	0.30	+1.0
3,647,349	-		GFF3602	0.30	-0.7
3,647,357	-		GFF3602	0.31	+0.3
3,647,419	-		GFF3602	0.36	+0.1
3,647,419	-		GFF3602	0.36	-0.6
3,647,426	+		GFF3602	0.37	-1.2
3,647,426	+		GFF3602	0.37	-0.3
3,647,426	+		GFF3602	0.37	-0.8
3,647,434	-		GFF3602	0.38	+0.1
3,647,439	+		GFF3602	0.38	-1.8
3,647,439	+		GFF3602	0.38	-0.8
3,647,443	+		GFF3602	0.39	+0.1
3,647,447	-		GFF3602	0.39	+1.0
3,647,452	-		GFF3602	0.40	+0.6
3,647,453	+		GFF3602	0.40	-0.3
3,647,461	-		GFF3602	0.40	-0.1
3,647,490	-		GFF3602	0.43	+0.6
3,647,527	+		GFF3602	0.47	-0.8
3,647,586	-		GFF3602	0.52	-1.0
3,647,592	-		GFF3602	0.53	-0.4
3,647,599	+		GFF3602	0.53	+0.1