Strain Fitness in Sphingobium sp. HT1-2 around GFF1550

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,581,472	-		GFF1549	0.35	-1.5
1,581,497	+		GFF1549	0.37	+0.0
1,581,497	+		GFF1549	0.37	+0.9
1,581,506	-		GFF1549	0.37	+0.2
1,581,506	-		GFF1549	0.37	-0.3
1,581,506	-		GFF1549	0.37	+1.5
1,581,515	+		GFF1549	0.38	+0.5
1,581,515	-		GFF1549	0.38	-0.1
1,581,552	+		GFF1549	0.40	-0.7
1,581,554	+		GFF1549	0.40	+0.0
1,581,560	-		GFF1549	0.41	-1.4
1,581,562	-		GFF1549	0.41	-0.1
1,581,575	-		GFF1549	0.42	+0.6
1,581,578	-		GFF1549	0.42	-0.8
1,581,580	+		GFF1549	0.42	+0.5
1,581,581	-		GFF1549	0.42	+0.1
1,581,586	-		GFF1549	0.43	-0.7
1,581,608	+		GFF1549	0.44	-0.2
1,581,608	+		GFF1549	0.44	+0.9
1,581,614	-		GFF1549	0.44	-1.7
1,581,614	-		GFF1549	0.44	-1.5
1,581,620	+		GFF1549	0.45	-0.6
1,581,653	+		GFF1549	0.47	+0.1
1,581,661	-		GFF1549	0.48	-0.2
1,581,677	+		GFF1549	0.49	-0.9
1,581,682	+		GFF1549	0.49	-1.9
1,581,682	+		GFF1549	0.49	+0.5
1,581,682	+		GFF1549	0.49	-2.5
1,581,684	+		GFF1549	0.49	+0.7
1,581,687	+		GFF1549	0.49	-0.2
1,581,690	-		GFF1549	0.50	+0.8
1,581,690	-		GFF1549	0.50	-0.0
1,581,690	-		GFF1549	0.50	+1.3
1,581,690	-		GFF1549	0.50	+0.3
1,581,692	-		GFF1549	0.50	-1.6
1,581,695	-		GFF1549	0.50	+0.5
1,581,703	+		GFF1549	0.50	+0.8
1,581,703	+		GFF1549	0.50	-1.0
1,581,706	-		GFF1549	0.51	-1.2
1,581,706	-		GFF1549	0.51	-1.4
1,581,706	-		GFF1549	0.51	+0.0
1,581,706	-		GFF1549	0.51	-0.4
1,581,706	-		GFF1549	0.51	+0.7
1,581,711	-		GFF1549	0.51	-0.4
1,581,724	+		GFF1549	0.52	+0.9
1,581,732	-		GFF1549	0.52	+0.1
1,581,732	-		GFF1549	0.52	-1.5
1,581,742	+		GFF1549	0.53	+0.5
1,581,742	-		GFF1549	0.53	-1.0
1,581,743	-		GFF1549	0.53	+0.5
1,581,755	-		GFF1549	0.54	-0.5
1,581,755	-		GFF1549	0.54	-0.4
1,581,772	-		GFF1549	0.55	-0.0
1,581,782	-		GFF1549	0.56	-0.6
1,581,792	+		GFF1549	0.56	-0.6
1,581,801	+		GFF1549	0.57	+0.7
1,581,879	+		GFF1549	0.62	+1.5
1,581,887	-		GFF1549	0.63	-0.5
1,581,928	+		GFF1549	0.66	-0.6
1,581,928	+		GFF1549	0.66	+0.3
1,581,928	+		GFF1549	0.66	+0.7
1,581,928	+		GFF1549	0.66	+0.5
1,581,936	-		GFF1549	0.66	-0.2
1,581,936	-		GFF1549	0.66	+0.2
1,581,944	+		GFF1549	0.67	-0.8
1,581,949	+		GFF1549	0.67	+0.8
1,581,949	+		GFF1549	0.67	+0.7
1,581,949	+		GFF1549	0.67	-0.7
1,581,949	+		GFF1549	0.67	+0.7
1,581,949	+		GFF1549	0.67	-0.7
1,581,949	+		GFF1549	0.67	+0.4
1,581,949	+		GFF1549	0.67	+0.7
1,581,949	+		GFF1549	0.67	-0.5
1,581,949	+		GFF1549	0.67	-0.4
1,581,949	+		GFF1549	0.67	-0.9
1,581,949	+		GFF1549	0.67	+0.3
1,581,957	-		GFF1549	0.67	-0.1
1,581,957	-		GFF1549	0.67	-1.0
1,581,957	-		GFF1549	0.67	+0.2
1,581,957	-		GFF1549	0.67	-0.2
1,581,957	-		GFF1549	0.67	-1.3
1,581,957	-		GFF1549	0.67	-1.0
1,581,957	-		GFF1549	0.67	+1.6
1,581,957	-		GFF1549	0.67	+0.5
1,581,962	-		GFF1549	0.68	+0.3
1,581,979	+		GFF1549	0.69	-1.6
1,581,987	-		GFF1549	0.69	+0.0
1,581,987	-		GFF1549	0.69	-0.8
1,581,998	-		GFF1549	0.70	+0.5
1,581,999	+		GFF1549	0.70	+1.2
1,582,012	+		GFF1549	0.71	-0.4
1,582,022	+		GFF1549	0.72	-1.2
1,582,042	-		GFF1549	0.73	-0.3
1,582,052	-		GFF1549	0.74	-0.3
1,582,065	+		GFF1549	0.75	+0.5
1,582,080	+		GFF1549	0.76	-0.4
1,582,128	+		GFF1549	0.79	-0.1
1,582,128	+		GFF1549	0.79	-0.1
1,582,136	-		GFF1549	0.79	-0.8
1,582,185	-		GFF1549	0.83	+0.4
1,582,186	-		GFF1549	0.83	-0.5
1,582,201	+		GFF1549	0.84	+0.1
1,582,232	+		GFF1549	0.86	-0.2
1,582,232	+		GFF1549	0.86	+0.2
1,582,232	+		GFF1549	0.86	+0.9
1,582,240	-		GFF1549	0.86	-1.4
1,582,267	+		GFF1549	0.88	+1.0
1,582,271	-		GFF1549	0.89	-0.9
1,582,272	+		GFF1549	0.89	-0.2
1,582,272	+		GFF1549	0.89	-2.4
1,582,272	+		GFF1549	0.89	+0.0
1,582,275	-		GFF1549	0.89	+0.1
1,582,290	+		GFF1549	0.90	+1.2
1,582,290	+		GFF1549	0.90	-0.9
1,582,298	+				-1.7
1,582,298	+				-1.3
1,582,298	+				-2.2
1,582,298	-				-0.3
1,582,298	-				-1.2
1,582,298	-				+0.3
1,582,300	+				+1.1
1,582,306	-				-0.2
1,582,338	+				-0.4
1,582,345	-				+0.1
1,582,366	-				-0.3
1,582,371	-				-2.2
1,582,381	+				-0.3
1,582,381	+				+0.9
1,582,381	+				-0.5
1,582,381	+				+0.1
1,582,381	+				+0.0
1,582,381	+				-0.4
1,582,381	+				+0.0
1,582,381	+				+0.6
1,582,381	+				+1.7
1,582,381	+				-0.5
1,582,381	+				-0.5
1,582,381	+				-0.6
1,582,381	+				-2.0
1,582,384	+				-1.0
1,582,384	-				-1.0
1,582,386	+				+0.1
1,582,389	-				-0.2
1,582,389	-				-1.3
1,582,389	-				-1.2
1,582,389	-				+0.0
1,582,389	-				-1.1
1,582,389	-				-0.2
1,582,389	-				-0.4
1,582,389	-				+0.4
1,582,389	-				-2.0
1,582,392	-				-1.4
1,582,396	+				+0.3
1,582,396	+				+0.4
1,582,401	-				+1.2
1,582,404	-				-0.9
1,582,404	-				-2.0
1,582,404	-				+1.6
1,582,404	-				+1.0
1,582,404	-				-0.3
1,582,404	-				+0.2
1,582,404	-				-0.7
1,582,404	-				-0.6
1,582,411	+				-1.6
1,582,415	+				+0.4
1,582,415	+				+0.5
1,582,419	-				+0.2
1,582,421	-				-2.5
1,582,433	+				+0.6
1,582,436	-				-0.3
1,582,442	+				+0.5
1,582,442	+				-0.4
1,582,447	+				-0.3
1,582,450	-				+0.3
1,582,450	-				-1.1
1,582,506	+				-1.5
1,582,531	-				-0.5
1,582,533	+				+0.0
1,582,536	-				-0.1
1,582,538	+				-0.8
1,582,541	-				-0.3
1,582,543	+				-2.5
1,582,543	+				-0.7
1,582,551	-				+0.0
1,582,567	+				+0.3
1,582,567	+				+1.9
1,582,635	-		GFF1550	0.13	+0.6
1,582,659	-		GFF1550	0.15	+0.1
1,582,670	+		GFF1550	0.15	-0.5
1,582,674	+		GFF1550	0.16	-0.1
1,582,681	+		GFF1550	0.16	+0.2
1,582,681	+		GFF1550	0.16	-1.1
1,582,681	+		GFF1550	0.16	-1.2
1,582,689	-		GFF1550	0.17	-0.7
1,582,700	+		GFF1550	0.17	-1.2
1,582,700	+		GFF1550	0.17	-1.0
1,582,700	+		GFF1550	0.17	-0.5
1,582,703	-		GFF1550	0.18	+0.5
1,582,708	-		GFF1550	0.18	+0.7
1,582,728	-		GFF1550	0.19	-0.8
1,582,743	+		GFF1550	0.20	+2.0
1,582,743	+		GFF1550	0.20	+0.9
1,582,751	-		GFF1550	0.21	-1.0
1,582,776	-		GFF1550	0.22	-0.1
1,582,780	-		GFF1550	0.23	-0.3
1,582,785	-		GFF1550	0.23	-1.4
1,582,786	-		GFF1550	0.23	+0.6
1,582,794	-		GFF1550	0.23	+0.5
1,582,802	+		GFF1550	0.24	-0.6
1,582,802	+		GFF1550	0.24	-1.9
1,582,802	+		GFF1550	0.24	+0.7
1,582,802	+		GFF1550	0.24	+0.1
1,582,810	-		GFF1550	0.24	-2.1
1,582,810	-		GFF1550	0.24	-2.3
1,582,810	-		GFF1550	0.24	-0.5
1,582,816	-		GFF1550	0.25	+1.0
1,582,821	-		GFF1550	0.25	+1.0
1,582,821	-		GFF1550	0.25	+1.0
1,582,823	+		GFF1550	0.25	-1.1
1,582,833	+		GFF1550	0.26	+0.7
1,582,838	+		GFF1550	0.26	-0.8
1,582,846	-		GFF1550	0.27	+0.9
1,582,852	-		GFF1550	0.27	-1.2
1,582,852	-		GFF1550	0.27	-0.3
1,582,854	+		GFF1550	0.27	-1.0
1,582,858	-		GFF1550	0.28	-1.2
1,582,858	-		GFF1550	0.28	+0.2
1,582,859	+		GFF1550	0.28	-0.4
1,582,859	+		GFF1550	0.28	+0.4
1,582,859	+		GFF1550	0.28	-1.2
1,582,859	+		GFF1550	0.28	-0.8
1,582,859	+		GFF1550	0.28	-1.1
1,582,859	+		GFF1550	0.28	+0.2
1,582,867	-		GFF1550	0.28	-0.1
1,582,867	-		GFF1550	0.28	-0.2
1,582,867	-		GFF1550	0.28	+1.4
1,582,867	-		GFF1550	0.28	-0.2
1,582,867	-		GFF1550	0.28	-0.6
1,582,867	-		GFF1550	0.28	+0.3
1,582,867	-		GFF1550	0.28	+0.7
1,582,867	-		GFF1550	0.28	-1.0
1,582,873	-		GFF1550	0.29	+0.7
1,582,873	-		GFF1550	0.29	-0.5
1,582,891	-		GFF1550	0.30	-0.5
1,582,891	-		GFF1550	0.30	-1.0
1,582,891	-		GFF1550	0.30	-1.1
1,582,898	+		GFF1550	0.30	-0.3
1,582,898	+		GFF1550	0.30	-0.4
1,582,906	-		GFF1550	0.31	-0.5
1,582,922	-		GFF1550	0.32	-0.7
1,582,927	-		GFF1550	0.32	-0.1
1,582,952	+		GFF1550	0.34	-1.7
1,582,952	+		GFF1550	0.34	-0.8
1,582,952	+		GFF1550	0.34	-1.3
1,582,954	+		GFF1550	0.34	-2.0
1,582,958	-		GFF1550	0.34	+0.8
1,582,960	-		GFF1550	0.34	+0.0
1,582,960	-		GFF1550	0.34	+0.3
1,582,972	+		GFF1550	0.35	+0.2
1,582,983	+		GFF1550	0.36	-1.1
1,582,988	+		GFF1550	0.36	-0.1
1,582,994	+		GFF1550	0.36	-0.1
1,583,002	-		GFF1550	0.37	-0.8
1,583,002	-		GFF1550	0.37	+0.7
1,583,023	-		GFF1550	0.38	-0.7
1,583,029	+		GFF1550	0.39	+0.1
1,583,030	+		GFF1550	0.39	+0.2
1,583,033	-		GFF1550	0.39	+0.5
1,583,033	-		GFF1550	0.39	-0.2
1,583,033	-		GFF1550	0.39	-1.8
1,583,033	-		GFF1550	0.39	+0.3
1,583,033	-		GFF1550	0.39	-1.3
1,583,054	-		GFF1550	0.40	-0.8
1,583,054	-		GFF1550	0.40	-0.9
1,583,070	+		GFF1550	0.41	+1.0
1,583,076	+		GFF1550	0.42	-0.5
1,583,095	+		GFF1550	0.43	+0.7
1,583,100	+		GFF1550	0.43	-0.4
1,583,108	-		GFF1550	0.44	-1.3
1,583,108	-		GFF1550	0.44	+0.9
1,583,123	-		GFF1550	0.45	-2.1
1,583,133	+		GFF1550	0.45	+0.4
1,583,133	+		GFF1550	0.45	-0.1
1,583,138	+		GFF1550	0.46	-2.0
1,583,141	-		GFF1550	0.46	+0.6
1,583,154	-		GFF1550	0.47	-0.1
1,583,165	+		GFF1550	0.47	-0.3
1,583,173	-		GFF1550	0.48	-0.3
1,583,173	-		GFF1550	0.48	+0.0
1,583,199	-		GFF1550	0.50	-1.4
1,583,207	+		GFF1550	0.50	-0.5
1,583,207	+		GFF1550	0.50	-0.9
1,583,207	+		GFF1550	0.50	-0.7
1,583,207	+		GFF1550	0.50	+1.4
1,583,207	+		GFF1550	0.50	-1.5
1,583,207	+		GFF1550	0.50	-0.2
1,583,207	+		GFF1550	0.50	-0.7
1,583,207	+		GFF1550	0.50	+1.7
1,583,207	+		GFF1550	0.50	-1.4
1,583,207	+		GFF1550	0.50	-1.3
1,583,207	+		GFF1550	0.50	-0.4
1,583,207	+		GFF1550	0.50	-0.1
1,583,207	+		GFF1550	0.50	+0.5
1,583,207	+		GFF1550	0.50	-2.6
1,583,207	+		GFF1550	0.50	-0.6
1,583,207	+		GFF1550	0.50	-1.0
1,583,207	+		GFF1550	0.50	+0.2
1,583,215	-		GFF1550	0.51	-0.1
1,583,215	-		GFF1550	0.51	-0.1
1,583,215	-		GFF1550	0.51	-0.4
1,583,215	-		GFF1550	0.51	-1.8
1,583,215	-		GFF1550	0.51	-0.3
1,583,215	-		GFF1550	0.51	-0.8
1,583,215	-		GFF1550	0.51	+0.5
1,583,215	-		GFF1550	0.51	+0.5
1,583,215	-		GFF1550	0.51	+0.5
1,583,215	-		GFF1550	0.51	-0.6
1,583,215	-		GFF1550	0.51	+1.6
1,583,215	-		GFF1550	0.51	-0.8
1,583,215	-		GFF1550	0.51	-0.5
1,583,215	-		GFF1550	0.51	+1.0
1,583,215	-		GFF1550	0.51	+0.1
1,583,215	-		GFF1550	0.51	+0.3
1,583,215	-		GFF1550	0.51	-0.4
1,583,215	-		GFF1550	0.51	-0.2
1,583,216	+		GFF1550	0.51	-2.5
1,583,220	-		GFF1550	0.51	-1.3
1,583,225	-		GFF1550	0.51	-0.1
1,583,225	-		GFF1550	0.51	-0.1
1,583,225	-		GFF1550	0.51	+0.4
1,583,238	+		GFF1550	0.52	-1.3
1,583,273	+		GFF1550	0.54	-0.9
1,583,273	+		GFF1550	0.54	+0.2
1,583,280	-		GFF1550	0.55	-0.6
1,583,281	-		GFF1550	0.55	+0.2
1,583,281	-		GFF1550	0.55	+0.5
1,583,282	+		GFF1550	0.55	-1.4
1,583,290	-		GFF1550	0.55	-2.2
1,583,290	-		GFF1550	0.55	-1.1
1,583,290	-		GFF1550	0.55	-0.8
1,583,336	-		GFF1550	0.58	+1.7
1,583,336	-		GFF1550	0.58	+0.6
1,583,350	-		GFF1550	0.59	+0.2
1,583,364	+		GFF1550	0.60	-0.0
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1,583,886	+				-0.1
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1,583,894	-				+0.9
1,583,894	-				-0.3
1,583,894	-				+0.5
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1,583,921	+				+0.1
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1,583,925	-				+0.3
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1,583,938	+				-1.4
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1,583,977	+				+0.4
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